organic compounds
Methyl 2-[2-(6-chloropyrimidin-4-yloxy)phenyl]-3,3-dimethoxypropanoate
aDepartment of Applied Chemistry, College of Science, Nanjing University of Technology, Nanjing 210009, People's Republic of China
*Correspondence e-mail: zhuhj@njut.edu.cn
In the title compound, C16H17ClN2O5, the dihedral angle between the aromatic rings is 77.36 (4)°. An intramolecular C—H⋯O interaction results in the formation of a planar [r.m.s. deviation = 0.103 (2) Å] five-membered ring, which is oriented at a dihedral angle of 4.84 (4)° with respect to the adjacent benzene ring. In the weak intermolecular C—H⋯π interactions are found.
Related literature
For a related structure, see: Bowden & Brown (1996). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: CAD-4 Software (Enraf–Nonius, 1985); cell CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809030736/hk2749sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809030736/hk2749Isup2.hkl
The title compound was prepared acording to a literature method (Bowden & Brown, 1996). Crystals suitable for X-ray analysis were obtained by dissolving the title compound in methanol and evaporating the solvent slowly at room temperature for 8 d.
H atoms were positioned geometrically with C-H = 0.93, 0.98 and 0.96 Å for aromatic, methine and methyl H atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C), where x = 1.5 for methyl H and x = 1.2 for all other H atoms.
Data collection: CAD-4 Software (Enraf–Nonius, 1985); cell
CAD-4 Software (Enraf–Nonius, 1985); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title molecule with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. Hydrogen bond is shown as dashed line. |
C16H17ClN2O5 | Z = 2 |
Mr = 352.77 | F(000) = 368 |
Triclinic, P1 | Dx = 1.358 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.5030 (19) Å | Cell parameters from 25 reflections |
b = 10.051 (2) Å | θ = 9–12° |
c = 11.162 (2) Å | µ = 0.25 mm−1 |
α = 101.24 (3)° | T = 294 K |
β = 108.47 (3)° | Needle, colorless |
γ = 113.42 (3)° | 0.20 × 0.20 × 0.05 mm |
V = 862.6 (5) Å3 |
Enraf–Nonius CAD-4 diffractometer | 1427 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.035 |
Graphite monochromator | θmax = 25.3°, θmin = 2.1° |
ω/2θ scans | h = 0→11 |
Absorption correction: ψ scan (North et al., 1968) | k = −12→11 |
Tmin = 0.952, Tmax = 0.988 | l = −13→12 |
3346 measured reflections | 3 standard reflections every 120 min |
3140 independent reflections | intensity decay: 1% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.078 | H-atom parameters constrained |
wR(F2) = 0.173 | w = 1/[σ2(Fo2) + (0.060P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max < 0.001 |
3140 reflections | Δρmax = 0.43 e Å−3 |
211 parameters | Δρmin = −0.45 e Å−3 |
Primary atom site location: structure-invariant direct methods |
C16H17ClN2O5 | γ = 113.42 (3)° |
Mr = 352.77 | V = 862.6 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.5030 (19) Å | Mo Kα radiation |
b = 10.051 (2) Å | µ = 0.25 mm−1 |
c = 11.162 (2) Å | T = 294 K |
α = 101.24 (3)° | 0.20 × 0.20 × 0.05 mm |
β = 108.47 (3)° |
Enraf–Nonius CAD-4 diffractometer | 1427 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.035 |
Tmin = 0.952, Tmax = 0.988 | 3 standard reflections every 120 min |
3346 measured reflections | intensity decay: 1% |
3140 independent reflections |
R[F2 > 2σ(F2)] = 0.078 | 211 parameters |
wR(F2) = 0.173 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.43 e Å−3 |
3140 reflections | Δρmin = −0.45 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl | 0.16863 (16) | 0.54848 (17) | 0.23573 (15) | 0.0918 (5) | |
O1 | −0.7131 (4) | 0.4178 (4) | −0.3468 (3) | 0.0806 (10) | |
O2 | −0.6406 (5) | 0.2829 (5) | −0.4869 (4) | 0.1119 (14) | |
O3 | −0.5192 (5) | 0.0798 (5) | −0.3027 (4) | 0.1150 (14) | |
O4 | −0.7857 (7) | −0.0410 (6) | −0.4408 (5) | 0.1371 (18) | |
O5 | −0.4458 (3) | 0.3794 (3) | −0.0203 (3) | 0.0658 (9) | |
N1 | −0.3799 (5) | 0.1982 (4) | 0.0434 (4) | 0.0631 (11) | |
N2 | −0.0880 (5) | 0.2702 (5) | 0.1614 (4) | 0.0727 (11) | |
C1 | −0.8435 (9) | 0.4438 (9) | −0.4217 (6) | 0.131 (3) | |
H1B | −0.8231 | 0.5446 | −0.3730 | 0.196* | |
H1C | −0.9517 | 0.3648 | −0.4345 | 0.196* | |
H1D | −0.8443 | 0.4398 | −0.5086 | 0.196* | |
C2 | −0.6907 (10) | 0.2967 (8) | −0.6060 (6) | 0.140 (3) | |
H2B | −0.6124 | 0.2972 | −0.6432 | 0.210* | |
H2C | −0.6938 | 0.3925 | −0.5950 | 0.210* | |
H2D | −0.8026 | 0.2105 | −0.6664 | 0.210* | |
C3 | −0.7194 (7) | 0.2788 (5) | −0.4025 (5) | 0.0710 (14) | |
H3A | −0.8400 | 0.2004 | −0.4578 | 0.085* | |
C4 | −0.5126 (8) | −0.0639 (7) | −0.3384 (6) | 0.1142 (16) | |
H4A | −0.3983 | −0.0432 | −0.2896 | 0.171* | |
H4B | −0.5469 | −0.1044 | −0.4343 | 0.171* | |
H4C | −0.5883 | −0.1389 | −0.3148 | 0.171* | |
C5 | −0.6598 (11) | 0.0736 (9) | −0.3573 (8) | 0.1142 (16) | |
C6 | −0.6513 (6) | 0.2253 (6) | −0.2981 (5) | 0.0688 (13) | |
H6A | −0.5298 | 0.3025 | −0.2460 | 0.083* | |
C7 | −0.7250 (6) | 0.2132 (5) | −0.1948 (5) | 0.0517 (11) | |
C8 | −0.6183 (5) | 0.2823 (4) | −0.0593 (5) | 0.0464 (10) | |
C9 | −0.6753 (6) | 0.2753 (5) | 0.0390 (5) | 0.0609 (13) | |
H9A | −0.5986 | 0.3259 | 0.1305 | 0.073* | |
C10 | −0.8481 (7) | 0.1921 (6) | 0.0000 (6) | 0.0699 (14) | |
H10A | −0.8884 | 0.1850 | 0.0656 | 0.084* | |
C11 | −0.9602 (6) | 0.1202 (6) | −0.1340 (7) | 0.0793 (16) | |
H11A | −1.0770 | 0.0644 | −0.1607 | 0.095* | |
C12 | −0.8968 (6) | 0.1316 (5) | −0.2302 (5) | 0.0691 (14) | |
H12A | −0.9732 | 0.0823 | −0.3218 | 0.083* | |
C13 | −0.3283 (6) | 0.3428 (5) | 0.0417 (4) | 0.0536 (11) | |
C14 | −0.2533 (6) | 0.1731 (5) | 0.1042 (5) | 0.0720 (14) | |
H14A | −0.2858 | 0.0737 | 0.1068 | 0.086* | |
C15 | −0.0453 (6) | 0.4133 (5) | 0.1578 (4) | 0.0586 (12) | |
C16 | −0.1620 (5) | 0.4550 (5) | 0.0963 (4) | 0.0575 (12) | |
H16A | −0.1295 | 0.5538 | 0.0923 | 0.069* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl | 0.0588 (8) | 0.0939 (11) | 0.1023 (11) | 0.0264 (7) | 0.0267 (8) | 0.0357 (8) |
O1 | 0.104 (3) | 0.067 (2) | 0.066 (2) | 0.047 (2) | 0.023 (2) | 0.0268 (18) |
O2 | 0.161 (4) | 0.177 (4) | 0.075 (3) | 0.115 (3) | 0.076 (3) | 0.085 (3) |
O3 | 0.118 (3) | 0.119 (3) | 0.127 (3) | 0.084 (3) | 0.050 (3) | 0.033 (3) |
O4 | 0.137 (4) | 0.122 (3) | 0.136 (4) | 0.083 (3) | 0.037 (3) | 0.013 (3) |
O5 | 0.0501 (19) | 0.0528 (18) | 0.097 (2) | 0.0245 (16) | 0.0248 (17) | 0.0461 (18) |
N1 | 0.065 (2) | 0.042 (2) | 0.092 (3) | 0.0293 (19) | 0.037 (2) | 0.035 (2) |
N2 | 0.064 (3) | 0.073 (3) | 0.099 (3) | 0.039 (2) | 0.039 (2) | 0.050 (3) |
C1 | 0.169 (7) | 0.195 (7) | 0.096 (5) | 0.143 (6) | 0.064 (5) | 0.062 (5) |
C2 | 0.239 (9) | 0.150 (6) | 0.093 (5) | 0.133 (6) | 0.082 (6) | 0.067 (5) |
C3 | 0.100 (4) | 0.053 (3) | 0.064 (3) | 0.036 (3) | 0.039 (3) | 0.028 (3) |
C4 | 0.127 (4) | 0.126 (4) | 0.125 (4) | 0.092 (3) | 0.056 (3) | 0.047 (3) |
C5 | 0.127 (4) | 0.126 (4) | 0.125 (4) | 0.092 (3) | 0.056 (3) | 0.047 (3) |
C6 | 0.084 (3) | 0.078 (3) | 0.058 (3) | 0.046 (3) | 0.034 (3) | 0.032 (2) |
C7 | 0.059 (3) | 0.044 (2) | 0.060 (3) | 0.029 (2) | 0.027 (3) | 0.027 (2) |
C8 | 0.051 (3) | 0.038 (2) | 0.057 (3) | 0.027 (2) | 0.020 (3) | 0.025 (2) |
C9 | 0.090 (4) | 0.045 (3) | 0.053 (3) | 0.037 (3) | 0.030 (3) | 0.024 (2) |
C10 | 0.085 (4) | 0.061 (3) | 0.104 (5) | 0.044 (3) | 0.063 (4) | 0.053 (3) |
C11 | 0.048 (3) | 0.063 (3) | 0.120 (5) | 0.021 (3) | 0.032 (4) | 0.044 (4) |
C12 | 0.068 (4) | 0.054 (3) | 0.065 (3) | 0.023 (3) | 0.019 (3) | 0.014 (3) |
C13 | 0.062 (3) | 0.048 (3) | 0.062 (3) | 0.032 (2) | 0.031 (2) | 0.025 (2) |
C14 | 0.068 (3) | 0.053 (3) | 0.113 (4) | 0.039 (3) | 0.041 (3) | 0.044 (3) |
C15 | 0.062 (3) | 0.059 (3) | 0.060 (3) | 0.025 (3) | 0.036 (3) | 0.027 (2) |
C16 | 0.053 (3) | 0.048 (3) | 0.068 (3) | 0.021 (2) | 0.027 (3) | 0.026 (2) |
Cl—C15 | 1.720 (5) | C3—H3A | 0.9800 |
O1—C1 | 1.410 (6) | C4—H4A | 0.9600 |
O1—C3 | 1.383 (5) | C4—H4B | 0.9600 |
O2—C2 | 1.318 (6) | C4—H4C | 0.9600 |
O2—C3 | 1.373 (5) | C5—C6 | 1.498 (8) |
O3—C4 | 1.453 (6) | C6—C7 | 1.528 (6) |
O3—C5 | 1.250 (7) | C6—H6A | 0.9800 |
O4—C5 | 1.186 (8) | C7—C8 | 1.363 (5) |
O5—C8 | 1.393 (4) | C7—C12 | 1.376 (6) |
O5—C13 | 1.341 (5) | C8—C9 | 1.370 (6) |
N1—C13 | 1.343 (5) | C9—C10 | 1.378 (6) |
N1—C14 | 1.327 (5) | C9—H9A | 0.9300 |
N2—C14 | 1.316 (5) | C10—C11 | 1.361 (7) |
N2—C15 | 1.343 (5) | C10—H10A | 0.9300 |
C1—H1B | 0.9600 | C11—C12 | 1.390 (7) |
C1—H1C | 0.9600 | C11—H11A | 0.9300 |
C1—H1D | 0.9600 | C12—H12A | 0.9300 |
C2—H2B | 0.9600 | C13—C16 | 1.359 (5) |
C2—H2C | 0.9600 | C14—H14A | 0.9300 |
C2—H2D | 0.9600 | C15—C16 | 1.370 (5) |
C3—C6 | 1.452 (6) | C16—H16A | 0.9300 |
C3—O1—C1 | 117.8 (4) | C5—C6—C7 | 108.8 (4) |
C2—O2—C3 | 126.5 (5) | C3—C6—H6A | 106.1 |
C5—O3—C4 | 117.8 (5) | C5—C6—H6A | 106.1 |
C13—O5—C8 | 121.1 (3) | C7—C6—H6A | 106.1 |
C14—N1—C13 | 114.1 (4) | C8—C7—C12 | 116.5 (4) |
C14—N2—C15 | 114.3 (4) | C8—C7—C6 | 119.9 (4) |
O1—C1—H1B | 109.5 | C12—C7—C6 | 123.6 (4) |
O1—C1—H1C | 109.5 | C7—C8—C9 | 123.0 (4) |
H1B—C1—H1C | 109.5 | C7—C8—O5 | 117.6 (4) |
O1—C1—H1D | 109.5 | C9—C8—O5 | 118.9 (4) |
H1B—C1—H1D | 109.5 | C8—C9—C10 | 118.9 (4) |
H1C—C1—H1D | 109.5 | C8—C9—H9A | 120.5 |
O2—C2—H2B | 109.5 | C10—C9—H9A | 120.5 |
O2—C2—H2C | 109.5 | C11—C10—C9 | 120.4 (5) |
H2B—C2—H2C | 109.5 | C11—C10—H10A | 119.8 |
O2—C2—H2D | 109.5 | C9—C10—H10A | 119.8 |
H2B—C2—H2D | 109.5 | C10—C11—C12 | 118.7 (5) |
H2C—C2—H2D | 109.5 | C10—C11—H11A | 120.6 |
O2—C3—O1 | 114.2 (4) | C12—C11—H11A | 120.6 |
O2—C3—C6 | 109.9 (4) | C7—C12—C11 | 122.4 (5) |
O1—C3—C6 | 111.5 (4) | C7—C12—H12A | 118.8 |
O2—C3—H3A | 107.0 | C11—C12—H12A | 118.8 |
O1—C3—H3A | 107.0 | O5—C13—N1 | 119.0 (4) |
C6—C3—H3A | 107.0 | O5—C13—C16 | 117.2 (4) |
O3—C4—H4A | 109.5 | N1—C13—C16 | 123.9 (4) |
O3—C4—H4B | 109.5 | N2—C14—N1 | 128.5 (4) |
H4A—C4—H4B | 109.5 | N2—C14—H14A | 115.7 |
O3—C4—H4C | 109.5 | N1—C14—H14A | 115.7 |
H4A—C4—H4C | 109.5 | N2—C15—C16 | 123.5 (4) |
H4B—C4—H4C | 109.5 | N2—C15—Cl | 116.9 (4) |
O4—C5—O3 | 123.8 (7) | C16—C15—Cl | 119.6 (4) |
O4—C5—C6 | 124.5 (7) | C13—C16—C15 | 115.6 (4) |
O3—C5—C6 | 111.6 (7) | C13—C16—H16A | 122.2 |
C3—C6—C5 | 112.0 (5) | C15—C16—H16A | 122.2 |
C3—C6—C7 | 117.1 (4) | ||
C2—O2—C3—O1 | −67.6 (7) | C13—O5—C8—C7 | −114.9 (4) |
C2—O2—C3—C6 | 166.3 (6) | C13—O5—C8—C9 | 72.8 (5) |
C1—O1—C3—O2 | 87.6 (6) | C7—C8—C9—C10 | 1.4 (6) |
C1—O1—C3—C6 | −147.2 (5) | O5—C8—C9—C10 | 173.3 (3) |
C4—O3—C5—O4 | −3.6 (11) | C8—C9—C10—C11 | −1.0 (6) |
C4—O3—C5—C6 | 173.0 (5) | C9—C10—C11—C12 | 0.4 (7) |
O2—C3—C6—C5 | −53.2 (6) | C8—C7—C12—C11 | 0.5 (6) |
O1—C3—C6—C5 | 179.1 (5) | C6—C7—C12—C11 | 178.8 (4) |
O2—C3—C6—C7 | −179.9 (4) | C10—C11—C12—C7 | −0.1 (7) |
O1—C3—C6—C7 | 52.5 (6) | C8—O5—C13—N1 | 12.4 (6) |
O4—C5—C6—C3 | −54.2 (10) | C8—O5—C13—C16 | −169.3 (4) |
O3—C5—C6—C3 | 129.3 (6) | C14—N1—C13—O5 | 178.4 (4) |
O4—C5—C6—C7 | 76.8 (8) | C14—N1—C13—C16 | 0.2 (6) |
O3—C5—C6—C7 | −99.7 (6) | C15—N2—C14—N1 | 0.9 (8) |
C3—C6—C7—C8 | −128.5 (4) | C13—N1—C14—N2 | 0.0 (8) |
C5—C6—C7—C8 | 103.3 (5) | C14—N2—C15—C16 | −2.0 (7) |
C3—C6—C7—C12 | 53.2 (6) | C14—N2—C15—Cl | 177.9 (4) |
C5—C6—C7—C12 | −75.0 (6) | O5—C13—C16—C15 | −179.4 (4) |
C12—C7—C8—C9 | −1.1 (6) | N1—C13—C16—C15 | −1.2 (7) |
C6—C7—C8—C9 | −179.5 (4) | N2—C15—C16—C13 | 2.2 (7) |
C12—C7—C8—O5 | −173.1 (3) | Cl—C15—C16—C13 | −177.7 (3) |
C6—C7—C8—O5 | 8.4 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6A···O5 | 0.98 | 2.25 | 2.777 (6) | 113 |
C1—H1B···Cg2i | 0.96 | 2.97 | 3.696 (5) | 134 |
C16—H16A···Cg1i | 0.93 | 2.85 | 3.661 (4) | 146 |
Symmetry code: (i) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C16H17ClN2O5 |
Mr | 352.77 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 294 |
a, b, c (Å) | 9.5030 (19), 10.051 (2), 11.162 (2) |
α, β, γ (°) | 101.24 (3), 108.47 (3), 113.42 (3) |
V (Å3) | 862.6 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.20 × 0.20 × 0.05 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.952, 0.988 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3346, 3140, 1427 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.601 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.078, 0.173, 1.07 |
No. of reflections | 3140 |
No. of parameters | 211 |
No. of restraints | ? |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.43, −0.45 |
Computer programs: CAD-4 Software (Enraf–Nonius, 1985), XCAD4 (Harms & Wocadlo, 1995), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6A···O5 | 0.98 | 2.25 | 2.777 (6) | 113 |
C1—H1B···Cg2i | 0.96 | 2.97 | 3.696 (5) | 134 |
C16—H16A···Cg1i | 0.93 | 2.85 | 3.661 (4) | 146 |
Symmetry code: (i) −x+1, −y+1, −z. |
Acknowledgements
The authors thank the Center of Testing and Analysis, Nanjing University, for support.
References
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Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The title compound can be used as an intermediate in the preparation of azoxystrobin, which is an important fungicide (Bowden & Brown, 1996). We report herein the crystal structure of the title compound, which is of interest to us in the field.
In the molecule of the title compound (Fig. 1), the bond lengths (Allen et al., 1987) and angles are within normal ranges. Rings A (C7-C12) and B (N1/N2/C13-C16) are, of course, planar and the dihedral angle between them is A/B = 77.36 (4)°. Intramolecular C-H···O interaction (Table 1) results in the formation of a planar five-membered ring C (O5/C6-C8/H6A), which is oriented with respect to the adjacent ring A at a dihedral angle of A/C = 4.84 (4)°.
In the crystal structure, weak C—H···π interactions (Table 1) are found.