metal-organic compounds
Poly[diaqua(μ2-oxalato-κ4O1,O2:O1′,O2′)(μ2-pyrazine-2-carboxylato-κ4N1,O:O,O′)neodymium(III)]
aSchool of Chemistry and Environment, South China Normal University, Guangzhou 510006, People's Republic of China, and bKey Laboratory of the Technology of Electrochemical Energy Storage and Power Generation in Guangdong Universities, South China Normal University, Guangzhou 510006, People's Republic of China
*Correspondence e-mail: luoyf2004@yahoo.com.cn
In the title complex, [Nd(C5H3N2O2)(C2O4)(H2O)2]n, the NdIII atom is ten-coordinated by one N atom and three O atoms from two pyrazine-2-carboxylate ligands, four O atoms from two oxalate ligands and two water molecules in a distorted bicapped square-antiprismatic geometry. The two crystallographically independent oxalate ligands, each lying on an inversion center, act as bridging ligands, linking Nd atoms into an extended zigzag chain. Neighboring chains are linked by the pyrazine-2-carboxylate ligands into a two-dimensional layerlike network in the (10) plane. The layers are further connected by O—H⋯O and O—H⋯N hydrogen bonds, forming a three-dimensional supramolecular network.
Related literature
For general background to lanthanide coordination frameworks, see: Han et al. (2009); Li et al. (2006); Wang et al. (2006); Zhou et al. (2006).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536809031250/hy2217sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809031250/hy2217Isup2.hkl
A mixture of Nd2O3 (0.245 g, 0.75 mmol), pyrazine-2-carboxylic acid (0.186 g, 1.5 mmol), oxalic acid (0.135 g, 1.5 mmol), water (10 ml) in the presence of HNO3 (0.024 g, 0.385 mmol) was stirred vigorously for 20 min and then sealed in a Teflon-lined stainless-steel autoclave (20 ml capacity). The autoclave was heated and maintained at 433 K for 3 d, and then cooled to room temperature at 5 K h-1. Colorless block crystals of the title compound were obtained.
Water H atoms were tentatively located in difference Fourier maps and were refined with distance restraints of O—H = 0.84 (1) and H···H = 1.34 (1) Å , and with a fixed Uiso(H). C-bound H atoms were placed at calculated positions and were treated as riding on the parent C atoms, with C—H = 0.93 Å, and with Uiso(H) = 1.2Ueq(C). The highest residual electron density was found 0.96 Å from Nd1 and the deepest hole 0.87 Å from Nd1.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 30% probability level. H atoms have been omitted for clarity. [Symmetry codes: (i) 1-x, 1-y, 1-z; (ii) 2-x, 2-y, 2-z; (iii) 2-x, 1-y, 2-z.] | |
Fig. 2. View of the layered network in the title compound. |
[Nd(C5H3N2O2)(C2O4)(H2O)2] | Z = 2 |
Mr = 391.39 | F(000) = 374 |
Triclinic, P1 | Dx = 2.514 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.948 (3) Å | Cell parameters from 2522 reflections |
b = 8.6512 (18) Å | θ = 2.7–28.3° |
c = 8.7425 (18) Å | µ = 5.06 mm−1 |
α = 115.525 (2)° | T = 296 K |
β = 101.970 (3)° | Block, colorless |
γ = 96.306 (3)° | 0.23 × 0.19 × 0.17 mm |
V = 517.0 (2) Å3 |
Bruker APEXII CCD diffractometer | 1824 independent reflections |
Radiation source: fine-focus sealed tube | 1756 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.065 |
ϕ and ω scans | θmax = 25.2°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −8→9 |
Tmin = 0.320, Tmax = 0.420 | k = −8→10 |
2533 measured reflections | l = −10→10 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.132 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0478P)2 + 0.0313P] where P = (Fo2 + 2Fc2)/3 |
1824 reflections | (Δ/σ)max = 0.002 |
175 parameters | Δρmax = 1.95 e Å−3 |
6 restraints | Δρmin = −2.98 e Å−3 |
[Nd(C5H3N2O2)(C2O4)(H2O)2] | γ = 96.306 (3)° |
Mr = 391.39 | V = 517.0 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.948 (3) Å | Mo Kα radiation |
b = 8.6512 (18) Å | µ = 5.06 mm−1 |
c = 8.7425 (18) Å | T = 296 K |
α = 115.525 (2)° | 0.23 × 0.19 × 0.17 mm |
β = 101.970 (3)° |
Bruker APEXII CCD diffractometer | 1824 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1756 reflections with I > 2σ(I) |
Tmin = 0.320, Tmax = 0.420 | Rint = 0.065 |
2533 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 6 restraints |
wR(F2) = 0.132 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 1.95 e Å−3 |
1824 reflections | Δρmin = −2.98 e Å−3 |
175 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 1.1008 (9) | 0.3421 (10) | 0.7510 (9) | 0.0146 (15) | |
C2 | 1.2220 (10) | 0.2213 (10) | 0.7476 (10) | 0.0175 (15) | |
C3 | 1.2449 (13) | 0.0959 (12) | 0.5928 (12) | 0.0246 (19) | |
H3 | 1.1882 | 0.0920 | 0.4865 | 0.030* | |
C4 | 1.4345 (11) | 0.0053 (11) | 0.7489 (11) | 0.0227 (17) | |
H4 | 1.5126 | −0.0660 | 0.7543 | 0.027* | |
C5 | 1.4166 (11) | 0.1312 (11) | 0.9049 (11) | 0.0235 (17) | |
H5 | 1.4818 | 0.1415 | 1.0116 | 0.028* | |
C6 | 0.9283 (8) | 1.0062 (9) | 0.9289 (9) | 0.0114 (14) | |
C7 | 0.4413 (9) | 0.5252 (9) | 0.5645 (9) | 0.0156 (15) | |
H1W | 1.058 (11) | 0.745 (10) | 0.649 (9) | 0.023* | |
H2W | 1.143 (10) | 0.630 (10) | 0.676 (10) | 0.023* | |
H3W | 0.599 (5) | 0.229 (10) | 0.680 (9) | 0.023* | |
H4W | 0.731 (9) | 0.226 (9) | 0.802 (10) | 0.023* | |
N1 | 1.3077 (9) | 0.2389 (9) | 0.9065 (8) | 0.0175 (13) | |
N2 | 1.3439 (9) | −0.0191 (9) | 0.5892 (9) | 0.0240 (15) | |
Nd1 | 0.83941 (4) | 0.58653 (4) | 0.82456 (4) | 0.0124 (2) | |
O1 | 1.0011 (8) | 0.3228 (8) | 0.6106 (7) | 0.0244 (13) | |
O2 | 1.1050 (7) | 0.4616 (7) | 0.9021 (7) | 0.0182 (11) | |
O3 | 0.8094 (7) | 0.8693 (7) | 0.8272 (7) | 0.0185 (11) | |
O4 | 0.9419 (7) | 1.1485 (7) | 0.9251 (7) | 0.0192 (11) | |
O5 | 0.5149 (7) | 0.5678 (8) | 0.7214 (7) | 0.0230 (12) | |
O6 | 0.2843 (7) | 0.5193 (8) | 0.4984 (6) | 0.0210 (11) | |
O1W | 1.0754 (9) | 0.6971 (9) | 0.7148 (8) | 0.0240 (13) | |
O2W | 0.7008 (7) | 0.2834 (7) | 0.7480 (7) | 0.0204 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.019 (4) | 0.013 (4) | 0.016 (4) | 0.002 (3) | 0.009 (3) | 0.009 (3) |
C2 | 0.024 (4) | 0.013 (4) | 0.016 (4) | 0.001 (3) | 0.005 (3) | 0.007 (3) |
C3 | 0.034 (5) | 0.016 (5) | 0.020 (4) | 0.005 (4) | 0.007 (4) | 0.006 (4) |
C4 | 0.028 (4) | 0.016 (4) | 0.028 (4) | 0.010 (3) | 0.016 (4) | 0.010 (4) |
C5 | 0.025 (4) | 0.024 (4) | 0.030 (4) | 0.011 (3) | 0.009 (3) | 0.018 (4) |
C6 | 0.008 (3) | 0.006 (3) | 0.014 (3) | −0.001 (2) | −0.001 (3) | 0.001 (3) |
C7 | 0.018 (4) | 0.006 (4) | 0.016 (4) | 0.000 (3) | 0.007 (3) | −0.001 (3) |
N1 | 0.023 (3) | 0.015 (3) | 0.018 (3) | 0.008 (3) | 0.007 (3) | 0.009 (3) |
N2 | 0.029 (4) | 0.013 (3) | 0.027 (4) | 0.003 (3) | 0.014 (3) | 0.004 (3) |
Nd1 | 0.0159 (3) | 0.0065 (3) | 0.0146 (3) | 0.00016 (19) | 0.0035 (2) | 0.0058 (2) |
O1 | 0.032 (3) | 0.027 (3) | 0.021 (3) | 0.010 (3) | 0.009 (2) | 0.016 (3) |
O2 | 0.022 (3) | 0.014 (3) | 0.024 (3) | 0.006 (2) | 0.011 (2) | 0.012 (2) |
O3 | 0.016 (3) | 0.013 (3) | 0.024 (3) | 0.000 (2) | 0.000 (2) | 0.010 (2) |
O4 | 0.025 (3) | 0.010 (3) | 0.024 (3) | 0.002 (2) | 0.003 (2) | 0.011 (2) |
O5 | 0.022 (3) | 0.033 (3) | 0.019 (3) | 0.009 (2) | 0.008 (2) | 0.014 (3) |
O6 | 0.019 (3) | 0.024 (3) | 0.015 (3) | 0.004 (2) | 0.003 (2) | 0.006 (2) |
O1W | 0.033 (3) | 0.022 (3) | 0.022 (3) | 0.008 (3) | 0.013 (3) | 0.012 (3) |
O2W | 0.029 (3) | 0.007 (3) | 0.022 (3) | −0.003 (2) | 0.006 (2) | 0.006 (2) |
C1—O1 | 1.246 (9) | Nd1—O2W | 2.467 (5) |
C1—O2 | 1.270 (9) | Nd1—O3 | 2.474 (5) |
C1—C2 | 1.492 (10) | Nd1—O6ii | 2.490 (5) |
C2—N1 | 1.350 (10) | Nd1—O4i | 2.508 (5) |
C2—C3 | 1.386 (11) | Nd1—O5 | 2.512 (5) |
C3—N2 | 1.328 (11) | Nd1—O1W | 2.549 (6) |
C3—H3 | 0.9300 | Nd1—O2iii | 2.557 (5) |
C4—N2 | 1.345 (11) | Nd1—O2 | 2.573 (5) |
C4—C5 | 1.379 (11) | Nd1—N1iii | 2.765 (6) |
C4—H4 | 0.9300 | Nd1—O1 | 2.885 (6) |
C5—N1 | 1.337 (10) | O2—Nd1iii | 2.557 (5) |
C5—H5 | 0.9300 | O4—Nd1i | 2.508 (5) |
C6—O4 | 1.239 (9) | O6—Nd1ii | 2.490 (5) |
C6—O3 | 1.259 (9) | O1W—H1W | 0.84 (9) |
C6—C6i | 1.553 (13) | O1W—H2W | 0.85 (8) |
C7—O5 | 1.243 (9) | O2W—H3W | 0.84 (5) |
C7—O6 | 1.247 (9) | O2W—H4W | 0.84 (8) |
C7—C7ii | 1.560 (13) | ||
O1—C1—O2 | 123.1 (7) | O6ii—Nd1—O2iii | 151.94 (19) |
O1—C1—C2 | 120.3 (6) | O4i—Nd1—O2iii | 72.00 (17) |
O2—C1—C2 | 116.6 (6) | O5—Nd1—O2iii | 107.89 (16) |
N1—C2—C3 | 121.0 (7) | O1W—Nd1—O2iii | 125.89 (18) |
N1—C2—C1 | 115.7 (6) | O2W—Nd1—O2 | 76.93 (18) |
C3—C2—C1 | 123.3 (7) | O3—Nd1—O2 | 133.80 (17) |
N2—C3—C2 | 123.2 (8) | O6ii—Nd1—O2 | 113.72 (16) |
N2—C3—H3 | 118.4 | O4i—Nd1—O2 | 76.60 (17) |
C2—C3—H3 | 118.4 | O5—Nd1—O2 | 153.11 (18) |
N2—C4—C5 | 122.9 (7) | O1W—Nd1—O2 | 74.92 (18) |
N2—C4—H4 | 118.6 | O2iii—Nd1—O2 | 60.11 (19) |
C5—C4—H4 | 118.6 | O2W—Nd1—N1iii | 97.86 (19) |
N1—C5—C4 | 121.6 (7) | O3—Nd1—N1iii | 72.90 (18) |
N1—C5—H5 | 119.2 | O6ii—Nd1—N1iii | 128.29 (18) |
C4—C5—H5 | 119.2 | O4i—Nd1—N1iii | 68.70 (19) |
O4—C6—O3 | 126.2 (6) | O5—Nd1—N1iii | 65.79 (18) |
O4—C6—C6i | 117.3 (8) | O1W—Nd1—N1iii | 131.7 (2) |
O3—C6—C6i | 116.4 (8) | O2iii—Nd1—N1iii | 59.62 (17) |
O5—C7—O6 | 127.3 (6) | O2—Nd1—N1iii | 116.80 (17) |
O5—C7—C7ii | 116.5 (8) | O2W—Nd1—O1 | 66.01 (18) |
O6—C7—C7ii | 116.2 (8) | O3—Nd1—O1 | 128.48 (16) |
C5—N1—C2 | 116.2 (7) | O6ii—Nd1—O1 | 66.65 (16) |
C5—N1—Nd1iii | 126.3 (5) | O4i—Nd1—O1 | 113.54 (17) |
C2—N1—Nd1iii | 114.6 (5) | O5—Nd1—O1 | 120.34 (17) |
C3—N2—C4 | 114.9 (7) | O1W—Nd1—O1 | 64.46 (19) |
O2W—Nd1—O3 | 149.08 (18) | O2iii—Nd1—O1 | 99.62 (15) |
O2W—Nd1—O6ii | 83.06 (18) | O2—Nd1—O1 | 47.38 (16) |
O3—Nd1—O6ii | 80.47 (18) | N1iii—Nd1—O1 | 158.20 (17) |
O2W—Nd1—O4i | 139.97 (17) | C1—O1—Nd1 | 87.4 (4) |
O3—Nd1—O4i | 65.15 (16) | C1—O2—Nd1iii | 122.1 (4) |
O6ii—Nd1—O4i | 135.42 (18) | C1—O2—Nd1 | 101.6 (4) |
O2W—Nd1—O5 | 76.22 (19) | Nd1iii—O2—Nd1 | 119.89 (19) |
O3—Nd1—O5 | 73.09 (18) | C6—O3—Nd1 | 120.1 (4) |
O6ii—Nd1—O5 | 64.36 (16) | C6—O4—Nd1i | 119.1 (4) |
O4i—Nd1—O5 | 124.93 (17) | C7—O5—Nd1 | 121.0 (4) |
O2W—Nd1—O1W | 130.01 (19) | C7—O6—Nd1ii | 121.8 (4) |
O3—Nd1—O1W | 68.27 (19) | Nd1—O1W—H1W | 125 (5) |
O6ii—Nd1—O1W | 71.92 (19) | Nd1—O1W—H2W | 117 (6) |
O4i—Nd1—O1W | 69.52 (19) | H1W—O1W—H2W | 105 (8) |
O5—Nd1—O1W | 125.09 (18) | Nd1—O2W—H3W | 124 (5) |
O2W—Nd1—O2iii | 68.90 (17) | Nd1—O2W—H4W | 128 (5) |
O3—Nd1—O2iii | 124.64 (16) | H3W—O2W—H4W | 106 (8) |
Symmetry codes: (i) −x+2, −y+2, −z+2; (ii) −x+1, −y+1, −z+1; (iii) −x+2, −y+1, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O1iv | 0.84 (9) | 2.02 (6) | 2.707 (8) | 139 (7) |
O1W—H2W···O6v | 0.85 (8) | 2.07 (4) | 2.838 (8) | 152 (6) |
O2W—H3W···N2vi | 0.84 (5) | 2.50 (5) | 3.229 (9) | 145 (6) |
O2W—H4W···O4vii | 0.84 (8) | 2.13 (4) | 2.872 (8) | 147 (7) |
Symmetry codes: (iv) −x+2, −y+1, −z+1; (v) x+1, y, z; (vi) x−1, y, z; (vii) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | [Nd(C5H3N2O2)(C2O4)(H2O)2] |
Mr | 391.39 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 7.948 (3), 8.6512 (18), 8.7425 (18) |
α, β, γ (°) | 115.525 (2), 101.970 (3), 96.306 (3) |
V (Å3) | 517.0 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 5.06 |
Crystal size (mm) | 0.23 × 0.19 × 0.17 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.320, 0.420 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2533, 1824, 1756 |
Rint | 0.065 |
(sin θ/λ)max (Å−1) | 0.599 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.132, 1.08 |
No. of reflections | 1824 |
No. of parameters | 175 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.95, −2.98 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 1999), SHELXTL (Sheldrick, 2008).
Nd1—O2W | 2.467 (5) | Nd1—O1W | 2.549 (6) |
Nd1—O3 | 2.474 (5) | Nd1—O2iii | 2.557 (5) |
Nd1—O6i | 2.490 (5) | Nd1—O2 | 2.573 (5) |
Nd1—O4ii | 2.508 (5) | Nd1—N1iii | 2.765 (6) |
Nd1—O5 | 2.512 (5) | Nd1—O1 | 2.885 (6) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+2, −y+2, −z+2; (iii) −x+2, −y+1, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O1iv | 0.84 (9) | 2.02 (6) | 2.707 (8) | 139 (7) |
O1W—H2W···O6v | 0.85 (8) | 2.07 (4) | 2.838 (8) | 152 (6) |
O2W—H3W···N2vi | 0.84 (5) | 2.50 (5) | 3.229 (9) | 145 (6) |
O2W—H4W···O4vii | 0.84 (8) | 2.13 (4) | 2.872 (8) | 147 (7) |
Symmetry codes: (iv) −x+2, −y+1, −z+1; (v) x+1, y, z; (vi) x−1, y, z; (vii) x, y−1, z. |
Acknowledgements
The authors acknowledge the Chan Xue Yan Cooperative Special Project of Guangdong Province and the Ministry of Science and Technology of PRC (project No. 2007A090302046) and the Project of Science and Technology of Guangdong Province (project No. 2007A020200002-4) for supporting this work.
References
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In recent years, many research groups have devoted their work to the design and synthesis of lanthanide coordination frameworks with bridging multifunctional organic ligands, not only because of their fascinating topological networks, but also due to their potential applications in ion exchange, gas storage, catalysis and luminescence (Wang et al., 2006; Zhou et al., 2006). As a building block, pyrazine-2-carboxylic acid and oxalic acid are good ligands with multifunctional coordination sites providing a high likelihood for the generation of structures with high dimensions (Han et al., 2009; Li et al., 2006). Recently, we obtained the title coordination polymer under hydrothermal conditions.
In the title compound, the NdIII atom is coordinated by seven O atoms and one N atom from two pyrazine-2-carboxylate ligands and two oxalate ligands, and by two water molecules in a distorted bicapped square-antiprismatic geometry (Fig. 1). The NdIII atoms are linked by the oxalate ligands, forming an extended zigzag chain. These chains are linked by the pyrazine-2-carboxylate ligands into a two-dimensional layerlike network (Fig. 2). The Nd—O and Nd—N bond lengths range from 2.467 (4) to 2.885 (6) Å (Table 1). O—H···O and O—H···N hydrogen bonds (Table 2) involving the pyrazine-2-carboxylate ligands, coordinated water molecules and oxalate ligands assemble neighboring layers into a three-dimensional supramolecular network.