organic compounds
3-(2-Chloroethyl)-2-methyl-4-oxo-4H-pyrido[1,2-a]pyrimidinium 2,4,6-trinitrophenolate
aDepartment of Chemistry, Keene State College, 229 Main Street, Keene, NH 03435-2001, USA, bDepartment of Chemistry, Howard University, 525 College Street NW, Washington, DC 20059, USA, cDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India, and dDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri 574 199, India
*Correspondence e-mail: rbutcher99@yahoo.com
In the cation of the title salt, C11H12ClN2O+·C6H2N3O7−, the chloroethyl side chain is in a syn conformation, nearly orthogonal to the pyrimidine ring, with a dihedral angle of 78.9 (6)° between the plane of the chloroethyl chain and the pyrimidine ring. The dihedral angle between the fused rings is 4.3 (3)°. In the picrate anion, the benzene mean plane makes dihedral angles of 26.7 (1), 33.6 (2) and 5.3 (6)° with the two o-NO2 groups and the p-NO2 group, respectively. Extensive hydrogen-bond interactions occur between the cation–anion pair which help to establish the crystal packing. A three-center O⋯(H,H)—(N,C) acceptor hydrogen bond is observed between the phenolate O atom of the picrate anion and the amine and methyl groups of the cation. An N—H⋯(O,O) bifurcated hydrogen bond is observed between the amine group and two O atoms from the phenolate and o-NO2 groups.
Related literature
For related structures, see: Blaton et al. (1995); Chen & He (2006); Peeters et al. (1993). For general background, see: Baraldi et al. (2002); Gabbert & Giannini (1997); Jasinski et al. (2009); White et al. (2004). For a description of the Cambridge Structural Database, see: Allen (2002) and for the program Mogul, see: Bruno et al. (2004). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis Pro (Oxford Diffraction, 2007); cell CrysAlis RED (Oxford Diffraction, 2007); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809032693/is2446sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809032693/is2446Isup2.hkl
The title compound was synthesized by adding a
of picric acid (0.92 g, 2 mmol) in methanol to a solution of 3-(2-chloroethyl)-2-methyl-4H-pyrido[1,2-a]pyrimidin-4-one (0.45 g, 2 mmol) in 10 ml of methanol. A yellow color developed and the resulting solution was stirred well with the formation of yellow precipitate which was filtered off, washed several times with diethyl ether and then dried over CaCl2 (yield 64.5%). X-ray quality crystals were grown from acetone solution. The melting range was found to be 415–418 K.All of the H atoms were placed in their calculated positions and then refined using the riding model with N—H = 0.88 Å, C—H = 0.95–0.99 Å, and with Uiso(H) = 1.17–1.48Ueq(C,N).
Data collection: CrysAlis PRO (Oxford Diffraction, 2007); cell
CrysAlis RED (Oxford Diffraction, 2007); data reduction: CrysAlis RED (Oxford Diffraction, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Molecular structure of the title compound, C11H12ClN2O+.C6H2N3O7-, showing the cation-anion unit that comprises the asymmetric unit, the atom labeling scheme and 50% probability displacement ellipsoids. | |
Fig. 2. Packing diagram of the title compound, (I), viewed down the b axis. Dashed lines indicate strong N—H···O, and weak N—H···O, C—H···O hydrogen bond interactions which produces a two-dimensional network arranged along the (101) plane of the unit cell. |
C11H12ClN2O+·C6H2N3O7− | F(000) = 928 |
Mr = 451.78 | Dx = 1.629 Mg m−3 |
Monoclinic, P21/n | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: -P 2yn | Cell parameters from 4324 reflections |
a = 7.2718 (5) Å | θ = 4.1–74.1° |
b = 12.8159 (9) Å | µ = 2.41 mm−1 |
c = 19.940 (3) Å | T = 110 K |
β = 97.642 (9)° | Chunk, pale yellow |
V = 1841.8 (3) Å3 | 0.44 × 0.37 × 0.23 mm |
Z = 4 |
Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini Cu) detector | 3616 independent reflections |
Radiation source: Enhance (Cu) X-ray Source | 3198 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
Detector resolution: 10.5081 pixels mm-1 | θmax = 74.0°, θmin = 4.1° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007) | k = −15→9 |
Tmin = 0.309, Tmax = 0.575 | l = −23→24 |
6948 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.063P)2 + 0.629P] where P = (Fo2 + 2Fc2)/3 |
3616 reflections | (Δ/σ)max < 0.001 |
281 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
C11H12ClN2O+·C6H2N3O7− | V = 1841.8 (3) Å3 |
Mr = 451.78 | Z = 4 |
Monoclinic, P21/n | Cu Kα radiation |
a = 7.2718 (5) Å | µ = 2.41 mm−1 |
b = 12.8159 (9) Å | T = 110 K |
c = 19.940 (3) Å | 0.44 × 0.37 × 0.23 mm |
β = 97.642 (9)° |
Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini Cu) detector | 3616 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007) | 3198 reflections with I > 2σ(I) |
Tmin = 0.309, Tmax = 0.575 | Rint = 0.017 |
6948 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.30 e Å−3 |
3616 reflections | Δρmin = −0.29 e Å−3 |
281 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1A | 0.86173 (5) | 0.88220 (3) | 0.687448 (19) | 0.02115 (12) | |
O1A | 0.51748 (16) | 0.63234 (9) | 0.76768 (5) | 0.0210 (2) | |
N1A | 0.37082 (17) | 0.50513 (9) | 0.69885 (6) | 0.0150 (3) | |
C1A | 0.5193 (2) | 0.58121 (11) | 0.71692 (8) | 0.0162 (3) | |
C2A | 0.6526 (2) | 0.58732 (11) | 0.66975 (7) | 0.0153 (3) | |
C3A | 0.6432 (2) | 0.52080 (11) | 0.61613 (7) | 0.0154 (3) | |
N4A | 0.50951 (17) | 0.44532 (10) | 0.60742 (6) | 0.0162 (3) | |
H4AA | 0.5124 | 0.4000 | 0.5744 | 0.019* | |
C5A | 0.3734 (2) | 0.43685 (11) | 0.64690 (7) | 0.0157 (3) | |
C6A | 0.2346 (2) | 0.35986 (12) | 0.63478 (8) | 0.0196 (3) | |
H6AA | 0.2378 | 0.3105 | 0.5994 | 0.024* | |
C7A | 0.0949 (2) | 0.35698 (13) | 0.67466 (9) | 0.0226 (3) | |
H7AA | 0.0018 | 0.3046 | 0.6677 | 0.027* | |
C8A | 0.0903 (2) | 0.43233 (13) | 0.72609 (8) | 0.0227 (3) | |
H8AA | −0.0095 | 0.4328 | 0.7524 | 0.027* | |
C9A | 0.2275 (2) | 0.50377 (12) | 0.73803 (8) | 0.0190 (3) | |
H9AA | 0.2254 | 0.5532 | 0.7734 | 0.023* | |
C10A | 0.7963 (2) | 0.67205 (12) | 0.68363 (8) | 0.0171 (3) | |
H10A | 0.9037 | 0.6568 | 0.6595 | 0.021* | |
H10B | 0.8409 | 0.6754 | 0.7327 | 0.021* | |
C11A | 0.7098 (2) | 0.77552 (12) | 0.65971 (8) | 0.0187 (3) | |
H11A | 0.5904 | 0.7844 | 0.6778 | 0.022* | |
H11B | 0.6843 | 0.7757 | 0.6097 | 0.022* | |
C12A | 0.7717 (2) | 0.52487 (13) | 0.56313 (8) | 0.0202 (3) | |
H12A | 0.9003 | 0.5188 | 0.5848 | 0.030* | |
H12B | 0.7554 | 0.5914 | 0.5388 | 0.030* | |
H12C | 0.7433 | 0.4671 | 0.5312 | 0.030* | |
O1B | 0.57412 (15) | 0.30604 (8) | 0.51298 (5) | 0.0185 (2) | |
O21B | 0.81068 (17) | 0.36265 (9) | 0.42333 (6) | 0.0246 (3) | |
O22B | 0.75216 (16) | 0.25511 (9) | 0.33919 (6) | 0.0223 (3) | |
O41B | 0.88575 (16) | −0.10609 (9) | 0.40701 (6) | 0.0233 (3) | |
O42B | 0.78903 (17) | −0.16264 (9) | 0.49860 (6) | 0.0248 (3) | |
O61B | 0.52961 (16) | 0.07476 (10) | 0.64703 (6) | 0.0250 (3) | |
O62B | 0.61759 (18) | 0.23621 (9) | 0.64474 (6) | 0.0257 (3) | |
N2B | 0.76693 (17) | 0.27587 (10) | 0.40009 (7) | 0.0174 (3) | |
N4B | 0.81817 (17) | −0.09140 (10) | 0.45962 (7) | 0.0175 (3) | |
N6B | 0.59534 (18) | 0.14919 (11) | 0.61918 (6) | 0.0180 (3) | |
C1B | 0.6503 (2) | 0.21995 (11) | 0.50651 (7) | 0.0145 (3) | |
C2B | 0.7355 (2) | 0.19261 (12) | 0.44702 (7) | 0.0153 (3) | |
C3B | 0.7866 (2) | 0.09381 (12) | 0.43082 (7) | 0.0158 (3) | |
H3BA | 0.8335 | 0.0804 | 0.3894 | 0.019* | |
C4B | 0.76828 (19) | 0.01382 (12) | 0.47634 (7) | 0.0156 (3) | |
C5B | 0.70412 (19) | 0.03312 (12) | 0.53788 (7) | 0.0157 (3) | |
H5BA | 0.6955 | −0.0220 | 0.5691 | 0.019* | |
C6B | 0.6534 (2) | 0.13254 (12) | 0.55290 (7) | 0.0151 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1A | 0.0225 (2) | 0.0160 (2) | 0.0248 (2) | −0.00529 (13) | 0.00290 (15) | −0.00297 (14) |
O1A | 0.0287 (6) | 0.0192 (6) | 0.0158 (5) | −0.0004 (4) | 0.0054 (4) | −0.0034 (4) |
N1A | 0.0175 (6) | 0.0129 (6) | 0.0149 (6) | 0.0017 (5) | 0.0037 (5) | 0.0018 (5) |
C1A | 0.0202 (7) | 0.0121 (7) | 0.0157 (7) | 0.0020 (6) | 0.0006 (6) | 0.0025 (6) |
C2A | 0.0158 (7) | 0.0143 (7) | 0.0154 (7) | 0.0002 (6) | 0.0009 (5) | 0.0019 (5) |
C3A | 0.0154 (7) | 0.0140 (7) | 0.0167 (7) | 0.0020 (5) | 0.0018 (5) | 0.0017 (6) |
N4A | 0.0189 (6) | 0.0144 (6) | 0.0159 (6) | 0.0004 (5) | 0.0044 (5) | −0.0028 (5) |
C5A | 0.0187 (7) | 0.0128 (7) | 0.0156 (7) | 0.0032 (6) | 0.0023 (6) | 0.0027 (5) |
C6A | 0.0218 (8) | 0.0136 (7) | 0.0232 (8) | 0.0012 (6) | 0.0023 (6) | 0.0006 (6) |
C7A | 0.0205 (8) | 0.0169 (7) | 0.0303 (9) | −0.0027 (6) | 0.0035 (7) | 0.0057 (6) |
C8A | 0.0225 (8) | 0.0234 (8) | 0.0237 (8) | 0.0017 (6) | 0.0089 (6) | 0.0076 (7) |
C9A | 0.0226 (7) | 0.0190 (7) | 0.0165 (7) | 0.0039 (6) | 0.0069 (6) | 0.0048 (6) |
C10A | 0.0176 (7) | 0.0171 (7) | 0.0163 (7) | −0.0007 (6) | 0.0010 (6) | −0.0011 (6) |
C11A | 0.0180 (7) | 0.0150 (7) | 0.0221 (8) | −0.0044 (6) | −0.0002 (6) | −0.0017 (6) |
C12A | 0.0213 (7) | 0.0221 (8) | 0.0183 (7) | −0.0019 (6) | 0.0063 (6) | −0.0027 (6) |
O1B | 0.0219 (5) | 0.0163 (5) | 0.0175 (5) | 0.0027 (4) | 0.0037 (4) | −0.0018 (4) |
O21B | 0.0309 (6) | 0.0177 (6) | 0.0261 (6) | −0.0055 (5) | 0.0071 (5) | −0.0003 (5) |
O22B | 0.0257 (6) | 0.0268 (6) | 0.0149 (5) | 0.0026 (5) | 0.0045 (4) | 0.0025 (5) |
O41B | 0.0264 (6) | 0.0222 (6) | 0.0226 (6) | 0.0026 (5) | 0.0085 (5) | −0.0070 (5) |
O42B | 0.0296 (6) | 0.0152 (5) | 0.0313 (7) | 0.0001 (5) | 0.0103 (5) | 0.0018 (5) |
O61B | 0.0266 (6) | 0.0304 (7) | 0.0199 (6) | −0.0034 (5) | 0.0096 (5) | 0.0024 (5) |
O62B | 0.0412 (7) | 0.0208 (6) | 0.0149 (5) | 0.0088 (5) | 0.0029 (5) | −0.0030 (4) |
N2B | 0.0148 (6) | 0.0188 (7) | 0.0190 (6) | 0.0009 (5) | 0.0039 (5) | 0.0017 (5) |
N4B | 0.0141 (6) | 0.0172 (6) | 0.0210 (7) | −0.0015 (5) | 0.0018 (5) | −0.0039 (5) |
N6B | 0.0177 (6) | 0.0220 (7) | 0.0143 (6) | 0.0041 (5) | 0.0027 (5) | 0.0012 (5) |
C1B | 0.0129 (6) | 0.0157 (7) | 0.0148 (7) | −0.0008 (5) | 0.0010 (5) | −0.0021 (6) |
C2B | 0.0141 (6) | 0.0178 (7) | 0.0140 (7) | −0.0020 (5) | 0.0016 (5) | 0.0011 (6) |
C3B | 0.0131 (7) | 0.0198 (7) | 0.0145 (7) | −0.0007 (6) | 0.0025 (5) | −0.0026 (6) |
C4B | 0.0138 (7) | 0.0155 (7) | 0.0175 (7) | −0.0005 (5) | 0.0019 (5) | −0.0036 (6) |
C5B | 0.0125 (7) | 0.0166 (7) | 0.0178 (7) | −0.0014 (5) | 0.0011 (5) | 0.0007 (6) |
C6B | 0.0136 (7) | 0.0186 (7) | 0.0133 (7) | −0.0003 (5) | 0.0028 (5) | −0.0011 (6) |
Cl1A—C11A | 1.7979 (15) | C11A—H11A | 0.9900 |
O1A—C1A | 1.2073 (19) | C11A—H11B | 0.9900 |
N1A—C5A | 1.3582 (19) | C12A—H12A | 0.9800 |
N1A—C9A | 1.3835 (19) | C12A—H12B | 0.9800 |
N1A—C1A | 1.4636 (19) | C12A—H12C | 0.9800 |
C1A—C2A | 1.440 (2) | O1B—C1B | 1.2489 (18) |
C2A—C3A | 1.362 (2) | O21B—N2B | 1.2303 (18) |
C2A—C10A | 1.507 (2) | O22B—N2B | 1.2337 (17) |
C3A—N4A | 1.3659 (19) | O41B—N4B | 1.2307 (17) |
C3A—C12A | 1.502 (2) | O42B—N4B | 1.2355 (18) |
N4A—C5A | 1.3485 (19) | O61B—N6B | 1.2317 (18) |
N4A—H4AA | 0.8800 | O62B—N6B | 1.2279 (18) |
C5A—C6A | 1.409 (2) | N2B—C2B | 1.4572 (19) |
C6A—C7A | 1.372 (2) | N4B—C4B | 1.4469 (19) |
C6A—H6AA | 0.9500 | N6B—C6B | 1.4559 (19) |
C7A—C8A | 1.412 (2) | C1B—C6B | 1.451 (2) |
C7A—H7AA | 0.9500 | C1B—C2B | 1.452 (2) |
C8A—C9A | 1.352 (2) | C2B—C3B | 1.370 (2) |
C8A—H8AA | 0.9500 | C3B—C4B | 1.387 (2) |
C9A—H9AA | 0.9500 | C3B—H3BA | 0.9500 |
C10A—C11A | 1.517 (2) | C4B—C5B | 1.392 (2) |
C10A—H10A | 0.9900 | C5B—C6B | 1.371 (2) |
C10A—H10B | 0.9900 | C5B—H5BA | 0.9500 |
C5A—N1A—C9A | 120.69 (13) | Cl1A—C11A—H11A | 109.5 |
C5A—N1A—C1A | 122.17 (12) | C10A—C11A—H11B | 109.5 |
C9A—N1A—C1A | 117.12 (13) | Cl1A—C11A—H11B | 109.5 |
O1A—C1A—C2A | 126.96 (14) | H11A—C11A—H11B | 108.1 |
O1A—C1A—N1A | 118.57 (14) | C3A—C12A—H12A | 109.5 |
C2A—C1A—N1A | 114.47 (13) | C3A—C12A—H12B | 109.5 |
C3A—C2A—C1A | 120.70 (14) | H12A—C12A—H12B | 109.5 |
C3A—C2A—C10A | 123.83 (14) | C3A—C12A—H12C | 109.5 |
C1A—C2A—C10A | 115.46 (13) | H12A—C12A—H12C | 109.5 |
C2A—C3A—N4A | 120.25 (13) | H12B—C12A—H12C | 109.5 |
C2A—C3A—C12A | 124.01 (14) | O21B—N2B—O22B | 123.36 (13) |
N4A—C3A—C12A | 115.73 (13) | O21B—N2B—C2B | 118.35 (13) |
C5A—N4A—C3A | 123.23 (13) | O22B—N2B—C2B | 118.27 (13) |
C5A—N4A—H4AA | 118.4 | O41B—N4B—O42B | 122.99 (13) |
C3A—N4A—H4AA | 118.4 | O41B—N4B—C4B | 118.67 (13) |
N4A—C5A—N1A | 118.62 (13) | O42B—N4B—C4B | 118.33 (13) |
N4A—C5A—C6A | 121.39 (14) | O62B—N6B—O61B | 123.63 (13) |
N1A—C5A—C6A | 119.99 (14) | O62B—N6B—C6B | 118.15 (13) |
C7A—C6A—C5A | 119.23 (15) | O61B—N6B—C6B | 118.20 (13) |
C7A—C6A—H6AA | 120.4 | O1B—C1B—C6B | 125.86 (14) |
C5A—C6A—H6AA | 120.4 | O1B—C1B—C2B | 122.74 (13) |
C6A—C7A—C8A | 119.56 (15) | C6B—C1B—C2B | 111.23 (13) |
C6A—C7A—H7AA | 120.2 | C3B—C2B—C1B | 125.03 (13) |
C8A—C7A—H7AA | 120.2 | C3B—C2B—N2B | 117.04 (13) |
C9A—C8A—C7A | 120.20 (15) | C1B—C2B—N2B | 117.92 (13) |
C9A—C8A—H8AA | 119.9 | C2B—C3B—C4B | 118.42 (14) |
C7A—C8A—H8AA | 119.9 | C2B—C3B—H3BA | 120.8 |
C8A—C9A—N1A | 120.20 (15) | C4B—C3B—H3BA | 120.8 |
C8A—C9A—H9AA | 119.9 | C3B—C4B—C5B | 121.21 (14) |
N1A—C9A—H9AA | 119.9 | C3B—C4B—N4B | 119.28 (13) |
C2A—C10A—C11A | 108.90 (12) | C5B—C4B—N4B | 119.51 (13) |
C2A—C10A—H10A | 109.9 | C6B—C5B—C4B | 119.29 (14) |
C11A—C10A—H10A | 109.9 | C6B—C5B—H5BA | 120.4 |
C2A—C10A—H10B | 109.9 | C4B—C5B—H5BA | 120.4 |
C11A—C10A—H10B | 109.9 | C5B—C6B—C1B | 124.09 (14) |
H10A—C10A—H10B | 108.3 | C5B—C6B—N6B | 116.97 (13) |
C10A—C11A—Cl1A | 110.85 (11) | C1B—C6B—N6B | 118.92 (13) |
C10A—C11A—H11A | 109.5 | ||
C5A—N1A—C1A—O1A | −172.72 (13) | C2A—C10A—C11A—Cl1A | 170.43 (10) |
C9A—N1A—C1A—O1A | 6.0 (2) | O1B—C1B—C2B—C3B | −165.97 (15) |
C5A—N1A—C1A—C2A | 8.26 (19) | C6B—C1B—C2B—C3B | 9.5 (2) |
C9A—N1A—C1A—C2A | −173.04 (12) | O1B—C1B—C2B—N2B | 13.0 (2) |
O1A—C1A—C2A—C3A | 176.59 (15) | C6B—C1B—C2B—N2B | −171.52 (12) |
N1A—C1A—C2A—C3A | −4.5 (2) | O21B—N2B—C2B—C3B | −145.18 (14) |
O1A—C1A—C2A—C10A | −4.5 (2) | O22B—N2B—C2B—C3B | 33.30 (19) |
N1A—C1A—C2A—C10A | 174.42 (12) | O21B—N2B—C2B—C1B | 35.76 (19) |
C1A—C2A—C3A—N4A | −1.8 (2) | O22B—N2B—C2B—C1B | −145.77 (14) |
C10A—C2A—C3A—N4A | 179.40 (13) | C1B—C2B—C3B—C4B | −4.6 (2) |
C1A—C2A—C3A—C12A | 177.36 (14) | N2B—C2B—C3B—C4B | 176.39 (13) |
C10A—C2A—C3A—C12A | −1.5 (2) | C2B—C3B—C4B—C5B | −1.6 (2) |
C2A—C3A—N4A—C5A | 5.2 (2) | C2B—C3B—C4B—N4B | 178.83 (13) |
C12A—C3A—N4A—C5A | −174.00 (13) | O41B—N4B—C4B—C3B | 4.1 (2) |
C3A—N4A—C5A—N1A | −1.5 (2) | O42B—N4B—C4B—C3B | −175.13 (13) |
C3A—N4A—C5A—C6A | 177.89 (14) | O41B—N4B—C4B—C5B | −175.43 (13) |
C9A—N1A—C5A—N4A | 175.85 (13) | O42B—N4B—C4B—C5B | 5.3 (2) |
C1A—N1A—C5A—N4A | −5.5 (2) | C3B—C4B—C5B—C6B | 1.8 (2) |
C9A—N1A—C5A—C6A | −3.5 (2) | N4B—C4B—C5B—C6B | −178.67 (13) |
C1A—N1A—C5A—C6A | 175.12 (13) | C4B—C5B—C6B—C1B | 4.3 (2) |
N4A—C5A—C6A—C7A | −177.42 (14) | C4B—C5B—C6B—N6B | −177.30 (13) |
N1A—C5A—C6A—C7A | 2.0 (2) | O1B—C1B—C6B—C5B | 166.06 (15) |
C5A—C6A—C7A—C8A | 1.3 (2) | C2B—C1B—C6B—C5B | −9.2 (2) |
C6A—C7A—C8A—C9A | −3.1 (2) | O1B—C1B—C6B—N6B | −12.4 (2) |
C7A—C8A—C9A—N1A | 1.6 (2) | C2B—C1B—C6B—N6B | 172.34 (12) |
C5A—N1A—C9A—C8A | 1.8 (2) | O62B—N6B—C6B—C5B | 152.45 (14) |
C1A—N1A—C9A—C8A | −176.96 (13) | O61B—N6B—C6B—C5B | −26.3 (2) |
C3A—C2A—C10A—C11A | 100.58 (17) | O62B—N6B—C6B—C1B | −29.02 (19) |
C1A—C2A—C10A—C11A | −78.29 (16) | O61B—N6B—C6B—C1B | 152.23 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4A—H4AA···O1B | 0.88 | 1.82 | 2.6811 (16) | 167 |
N4A—H4AA···O62B | 0.88 | 2.58 | 2.8632 (17) | 100 |
C5B—H5BA···Cl1Ai | 0.95 | 2.79 | 3.6112 (16) | 146 |
C7A—H7AA···O1Aii | 0.95 | 2.57 | 3.2446 (19) | 128 |
C12A—H12C···O1B | 0.98 | 2.41 | 3.2477 (19) | 144 |
C9A—H9AA···O61Biii | 0.95 | 2.61 | 3.2734 (19) | 127 |
C12A—H12A···O21Biv | 0.98 | 2.62 | 3.340 (2) | 131 |
C10A—H10B···O62Bv | 0.99 | 2.54 | 3.494 (2) | 161 |
C11A—H11A···O22Bvi | 0.99 | 2.52 | 3.385 (2) | 146 |
C11A—H11B···O42Bvii | 0.99 | 2.56 | 3.431 (2) | 147 |
Symmetry codes: (i) x, y−1, z; (ii) −x+1/2, y−1/2, −z+3/2; (iii) −x+1/2, y+1/2, −z+3/2; (iv) −x+2, −y+1, −z+1; (v) −x+3/2, y+1/2, −z+3/2; (vi) −x+1, −y+1, −z+1; (vii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C11H12ClN2O+·C6H2N3O7− |
Mr | 451.78 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 110 |
a, b, c (Å) | 7.2718 (5), 12.8159 (9), 19.940 (3) |
β (°) | 97.642 (9) |
V (Å3) | 1841.8 (3) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 2.41 |
Crystal size (mm) | 0.44 × 0.37 × 0.23 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur diffractometer with a Ruby (Gemini Cu) detector |
Absorption correction | Multi-scan (CrysAlis RED; Oxford Diffraction, 2007) |
Tmin, Tmax | 0.309, 0.575 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6948, 3616, 3198 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.624 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.097, 1.03 |
No. of reflections | 3616 |
No. of parameters | 281 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.29 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2007), CrysAlis RED (Oxford Diffraction, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N4A—H4AA···O1B | 0.88 | 1.82 | 2.6811 (16) | 167.0 |
N4A—H4AA···O62B | 0.88 | 2.58 | 2.8632 (17) | 99.5 |
C5B—H5BA···Cl1Ai | 0.95 | 2.79 | 3.6112 (16) | 145.5 |
C7A—H7AA···O1Aii | 0.95 | 2.57 | 3.2446 (19) | 128.2 |
C12A—H12C···O1B | 0.98 | 2.41 | 3.2477 (19) | 143.7 |
C9A—H9AA···O61Biii | 0.95 | 2.61 | 3.2734 (19) | 127.2 |
C12A—H12A···O21Biv | 0.98 | 2.62 | 3.340 (2) | 130.8 |
C10A—H10B···O62Bv | 0.99 | 2.54 | 3.494 (2) | 160.7 |
C11A—H11A···O22Bvi | 0.99 | 2.52 | 3.385 (2) | 145.8 |
C11A—H11B···O42Bvii | 0.99 | 2.56 | 3.431 (2) | 146.6 |
Symmetry codes: (i) x, y−1, z; (ii) −x+1/2, y−1/2, −z+3/2; (iii) −x+1/2, y+1/2, −z+3/2; (iv) −x+2, −y+1, −z+1; (v) −x+3/2, y+1/2, −z+3/2; (vi) −x+1, −y+1, −z+1; (vii) x, y+1, z. |
Acknowledgements
QNMHA thanks the University of Mysore for use of its research facilities. RJB acknowledges the NSF MRI program (grant No. CHE-0619278) for funds to purchase an X-ray diffractometer.
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We have recently reported the crystal structure of 3-(2-chloroethyl)-2-methyl-4H-pyrido[1,2-a]pyrimidin-4-one (Jasinski et al., 2009) which is an intermediate in the synthesis of risperidone, and is a potent antipsychotic agent, especially useful for treating schizophrenia (Gabbert & Giannini, 1997). The present paper reports the interaction of 3-(2-chloroethyl)-2-methyl-4H-pyrido [1,2-a]pyrimidin-4-one as an electron donor with picric acid as electron acceptor which resulted in the formation of a charge transfer complex of title compound, (I), C17H14ClN5O8.
The title compound, C11H12ClN2O+.C6H2N3O7-, a picrate salt of 3-(2-chloroethyl)-2-methyl-4H-pyrido[1,2-a]pyrimidinium-4-one, crystallizes with one independent cation-anion pair in the asymmetric unit (Fig. 1). In the cation, the chloroethyl side chain is in a syn conformation [-sc, C1A—C2A—C10A—C11A = -78.29 (16)°], nearly orthogonal to the pyrimidine ring, with a dihedral angle of 78.9 (6)° between the chloroethyl side chain and the pyrimidine ring. The fused pyrimidine-pyridine ring is separated by 4.3 (3)°. In the picrate anion, the benzene ring adopts dihedral angles of 26.7 (1), 33.6 (2) and 5.3 (6)° with the mean planes of two o-NO2 and a p-NO2 group, respectively. Extensive hydrogen bond interactions occur between the cation-anion pair which help to establish crystal packing (Fig. 2). This includes a strong N4A—H4AA···O1B hydrogen bond and a collection of several weak C—H···O interactions within several sites between the cations and anions in the unit cell (Table 1). A three-center O···(H,H)-(N,C) acceptor hydrogen bond is observed between the phenolate oxygen atom (O1B) of the picrate anion and the amine (H4AA) and methyl group (H12C) hydrogen atoms of the pyrimidine group in the cation. A bifurcated (three-center) N—H···(O,O) hydrogen bond is observed between the amine hydrogen atom (H4AA) in the pyrimidine group and oxygen atoms from the phenolate (O1B) and o-NO2 (O62B) groups. Included in this bond is a weak N4A—H4AA···O62B interaction (Table 1). Bond lengths and angles in both the cation and anion can be regarded as normal (Cambridge Structural Database, Version 5.30, February, 2009; Allen, 2002, Mogul, Version 1.1.3; Bruno et al., 2004) The collective effects of both strong and weak intemolecular hydrogen bonds influence crystal packing in the title compound, C11H12ClN2O+.C6H2N3O7-, (I).