organic compounds
6,12-Dihydrodipyrido[1,2-a:1′,2′-d]pyrazinium bis(perchlorate)
aSchool of Applied Chemical Engineering, the Research Institute of Catalysis, Chonnam National University, Gwangju 500-757, Republic of Korea
*Correspondence e-mail: hakwang@chonnam.ac.kr
In the title compound, C12H12N22+·2ClO4−, the dihedral angle between the two outer pyridine rings of the dication is 44.8 (1)°. In the crystal, weak intermolecular C—H⋯O hydrogen bonds occur.
Related literature
For the 12H12N2)Br2, see: Bryce et al. (1985). For a MNDO (modified neglect of diatomic overlap) study of dipyridopyrazinium and related cations, see: Eaves et al. (1986).
of (CExperimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536809032528/om2266sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809032528/om2266Isup2.hkl
Single crystals of the title compound were unexpectedly obtained as a byproduct of an attempted preparation of an Mn(II) complex by reacting 2-(chloromethyl)pyridine hydrochloride (0.99 g, 6.04 mmol), 1,6-diaminohexane (0.17 g, 1.46 mmol), NaOH (for adjustment of pH 7–8) and Mn(ClO4)2.6H2O (0.37 g, 1.02 mmol) in EtOH (10 ml) and H2O (5 ml) for 2 h at 60 °C. Crystals suitable for X-ray analysis were obtained by slow evaporation from a CH3CN solution of the orange reaction product.
H atoms were positioned geometrically and allowed to ride on their respective carrier atoms [C—H = 0.93 (sp2) or 0.97 Å (sp3) and Uiso(H) = 1.2Ueq(C)].
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C12H12N22+·2ClO4− | F(000) = 784 |
Mr = 383.14 | Dx = 1.655 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2227 reflections |
a = 8.1632 (8) Å | θ = 2.5–23.7° |
b = 13.9396 (14) Å | µ = 0.47 mm−1 |
c = 13.5903 (13) Å | T = 296 K |
β = 96.023 (2)° | Block, colorless |
V = 1537.9 (3) Å3 | 0.22 × 0.16 × 0.10 mm |
Z = 4 |
Bruker SMART 1000 CCD diffractometer | 3809 independent reflections |
Radiation source: fine-focus sealed tube | 1871 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.068 |
ϕ and ω scans | θmax = 28.3°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −10→10 |
Tmin = 0.646, Tmax = 0.954 | k = −18→16 |
11269 measured reflections | l = −15→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.058 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.163 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0561P)2 + 0.3329P] where P = (Fo2 + 2Fc2)/3 |
3809 reflections | (Δ/σ)max < 0.001 |
217 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.48 e Å−3 |
C12H12N22+·2ClO4− | V = 1537.9 (3) Å3 |
Mr = 383.14 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.1632 (8) Å | µ = 0.47 mm−1 |
b = 13.9396 (14) Å | T = 296 K |
c = 13.5903 (13) Å | 0.22 × 0.16 × 0.10 mm |
β = 96.023 (2)° |
Bruker SMART 1000 CCD diffractometer | 3809 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 1871 reflections with I > 2σ(I) |
Tmin = 0.646, Tmax = 0.954 | Rint = 0.068 |
11269 measured reflections |
R[F2 > 2σ(F2)] = 0.058 | 0 restraints |
wR(F2) = 0.163 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.39 e Å−3 |
3809 reflections | Δρmin = −0.48 e Å−3 |
217 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.4245 (4) | 0.3340 (2) | 0.2124 (2) | 0.0413 (8) | |
N2 | 0.1643 (4) | 0.4419 (2) | 0.2709 (2) | 0.0424 (8) | |
C1 | 0.5777 (5) | 0.3093 (3) | 0.1934 (3) | 0.0512 (11) | |
H1 | 0.6517 | 0.2840 | 0.2435 | 0.061* | |
C2 | 0.6240 (6) | 0.3214 (3) | 0.1007 (3) | 0.0592 (12) | |
H2 | 0.7284 | 0.3025 | 0.0867 | 0.071* | |
C3 | 0.5151 (6) | 0.3618 (3) | 0.0275 (3) | 0.0584 (12) | |
H3 | 0.5465 | 0.3718 | −0.0356 | 0.070* | |
C4 | 0.3592 (5) | 0.3872 (3) | 0.0490 (3) | 0.0518 (11) | |
H4 | 0.2849 | 0.4144 | 0.0004 | 0.062* | |
C5 | 0.3140 (4) | 0.3723 (2) | 0.1422 (3) | 0.0360 (8) | |
C6 | 0.1484 (5) | 0.3943 (3) | 0.1727 (3) | 0.0486 (10) | |
H6A | 0.0892 | 0.4359 | 0.1240 | 0.058* | |
H6B | 0.0860 | 0.3353 | 0.1759 | 0.058* | |
C7 | 0.0714 (5) | 0.5186 (3) | 0.2886 (3) | 0.0528 (11) | |
H7 | −0.0036 | 0.5428 | 0.2386 | 0.063* | |
C8 | 0.0869 (6) | 0.5607 (3) | 0.3796 (3) | 0.0607 (12) | |
H8 | 0.0235 | 0.6140 | 0.3919 | 0.073* | |
C9 | 0.1978 (5) | 0.5233 (3) | 0.4535 (3) | 0.0582 (12) | |
H9 | 0.2083 | 0.5505 | 0.5163 | 0.070* | |
C10 | 0.2924 (5) | 0.4459 (3) | 0.4336 (3) | 0.0497 (10) | |
H10 | 0.3685 | 0.4211 | 0.4828 | 0.060* | |
C11 | 0.2753 (4) | 0.4047 (2) | 0.3413 (2) | 0.0334 (8) | |
C12 | 0.3709 (5) | 0.3198 (3) | 0.3127 (3) | 0.0444 (10) | |
H12A | 0.4667 | 0.3107 | 0.3604 | 0.053* | |
H12B | 0.3031 | 0.2627 | 0.3130 | 0.053* | |
Cl1 | 0.93531 (13) | 0.21962 (7) | 0.40847 (7) | 0.0483 (3) | |
O1 | 0.7805 (4) | 0.2646 (2) | 0.4167 (2) | 0.0735 (9) | |
O2 | 1.0582 (4) | 0.2624 (3) | 0.4763 (3) | 0.1006 (13) | |
O3 | 0.9764 (4) | 0.2311 (2) | 0.3100 (2) | 0.0798 (10) | |
O4 | 0.9247 (4) | 0.1204 (2) | 0.4313 (2) | 0.0759 (10) | |
Cl2 | 0.38056 (13) | 0.06673 (7) | 0.22970 (8) | 0.0508 (3) | |
O5 | 0.5488 (4) | 0.0854 (3) | 0.2602 (3) | 0.0955 (12) | |
O6 | 0.2971 (4) | 0.0624 (3) | 0.3163 (2) | 0.0988 (13) | |
O7 | 0.3618 (4) | −0.0210 (2) | 0.1771 (2) | 0.0821 (11) | |
O8 | 0.3058 (5) | 0.1403 (2) | 0.1684 (2) | 0.0844 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.047 (2) | 0.0404 (18) | 0.0363 (17) | −0.0034 (15) | 0.0031 (15) | −0.0021 (14) |
N2 | 0.0370 (18) | 0.053 (2) | 0.0378 (17) | −0.0020 (15) | 0.0059 (15) | 0.0048 (15) |
C1 | 0.048 (3) | 0.052 (3) | 0.054 (3) | 0.0070 (19) | 0.006 (2) | −0.007 (2) |
C2 | 0.054 (3) | 0.078 (3) | 0.048 (3) | 0.002 (2) | 0.020 (2) | −0.012 (2) |
C3 | 0.065 (3) | 0.068 (3) | 0.044 (2) | −0.011 (2) | 0.014 (2) | −0.011 (2) |
C4 | 0.063 (3) | 0.060 (3) | 0.031 (2) | −0.009 (2) | 0.000 (2) | 0.0016 (19) |
C5 | 0.038 (2) | 0.040 (2) | 0.0285 (18) | −0.0069 (17) | 0.0014 (16) | −0.0012 (15) |
C6 | 0.048 (3) | 0.061 (3) | 0.036 (2) | −0.006 (2) | −0.0005 (19) | −0.0014 (19) |
C7 | 0.044 (3) | 0.062 (3) | 0.053 (3) | 0.015 (2) | 0.010 (2) | 0.009 (2) |
C8 | 0.065 (3) | 0.059 (3) | 0.061 (3) | 0.018 (2) | 0.021 (3) | −0.003 (2) |
C9 | 0.067 (3) | 0.065 (3) | 0.044 (2) | −0.001 (2) | 0.015 (2) | −0.007 (2) |
C10 | 0.057 (3) | 0.057 (3) | 0.034 (2) | 0.004 (2) | 0.0051 (19) | −0.0004 (19) |
C11 | 0.034 (2) | 0.0347 (19) | 0.0311 (18) | −0.0020 (15) | 0.0029 (16) | 0.0035 (15) |
C12 | 0.054 (3) | 0.044 (2) | 0.035 (2) | 0.0008 (19) | 0.0062 (19) | 0.0034 (17) |
Cl1 | 0.0477 (6) | 0.0519 (6) | 0.0458 (6) | 0.0002 (5) | 0.0080 (5) | −0.0004 (5) |
O1 | 0.062 (2) | 0.088 (2) | 0.073 (2) | 0.0230 (18) | 0.0171 (17) | 0.0126 (18) |
O2 | 0.086 (3) | 0.098 (3) | 0.108 (3) | −0.009 (2) | −0.035 (2) | −0.029 (2) |
O3 | 0.103 (3) | 0.083 (2) | 0.061 (2) | −0.001 (2) | 0.046 (2) | 0.0076 (18) |
O4 | 0.106 (3) | 0.0527 (19) | 0.071 (2) | 0.0025 (18) | 0.020 (2) | 0.0110 (16) |
Cl2 | 0.0563 (7) | 0.0471 (6) | 0.0472 (6) | 0.0066 (5) | −0.0020 (5) | −0.0077 (5) |
O5 | 0.055 (2) | 0.120 (3) | 0.107 (3) | −0.005 (2) | −0.015 (2) | −0.016 (2) |
O6 | 0.085 (3) | 0.166 (4) | 0.048 (2) | 0.000 (2) | 0.0160 (19) | −0.012 (2) |
O7 | 0.117 (3) | 0.0503 (19) | 0.072 (2) | 0.0157 (18) | −0.021 (2) | −0.0168 (16) |
O8 | 0.120 (3) | 0.0476 (18) | 0.078 (2) | 0.0072 (18) | −0.026 (2) | 0.0011 (16) |
N1—C1 | 1.348 (5) | C7—H7 | 0.9300 |
N1—C5 | 1.352 (4) | C8—C9 | 1.382 (6) |
N1—C12 | 1.488 (4) | C8—H8 | 0.9300 |
N2—C7 | 1.346 (5) | C9—C10 | 1.370 (5) |
N2—C11 | 1.351 (4) | C9—H9 | 0.9300 |
N2—C6 | 1.484 (5) | C10—C11 | 1.372 (5) |
C1—C2 | 1.364 (6) | C10—H10 | 0.9300 |
C1—H1 | 0.9300 | C11—C12 | 1.492 (5) |
C2—C3 | 1.383 (6) | C12—H12A | 0.9700 |
C2—H2 | 0.9300 | C12—H12B | 0.9700 |
C3—C4 | 1.382 (6) | Cl1—O2 | 1.420 (3) |
C3—H3 | 0.9300 | Cl1—O4 | 1.421 (3) |
C4—C5 | 1.371 (5) | Cl1—O3 | 1.423 (3) |
C4—H4 | 0.9300 | Cl1—O1 | 1.426 (3) |
C5—C6 | 1.487 (5) | Cl2—O5 | 1.416 (3) |
C6—H6A | 0.9700 | Cl2—O7 | 1.417 (3) |
C6—H6B | 0.9700 | Cl2—O8 | 1.418 (3) |
C7—C8 | 1.363 (6) | Cl2—O6 | 1.421 (3) |
C1—N1—C5 | 122.0 (3) | C7—C8—C9 | 119.2 (4) |
C1—N1—C12 | 120.6 (3) | C7—C8—H8 | 120.4 |
C5—N1—C12 | 117.4 (3) | C9—C8—H8 | 120.4 |
C7—N2—C11 | 121.7 (3) | C10—C9—C8 | 119.6 (4) |
C7—N2—C6 | 121.3 (3) | C10—C9—H9 | 120.2 |
C11—N2—C6 | 117.0 (3) | C8—C9—H9 | 120.2 |
N1—C1—C2 | 119.8 (4) | C9—C10—C11 | 120.3 (4) |
N1—C1—H1 | 120.1 | C9—C10—H10 | 119.9 |
C2—C1—H1 | 120.1 | C11—C10—H10 | 119.9 |
C1—C2—C3 | 119.7 (4) | N2—C11—C10 | 118.9 (3) |
C1—C2—H2 | 120.1 | N2—C11—C12 | 116.7 (3) |
C3—C2—H2 | 120.1 | C10—C11—C12 | 124.4 (3) |
C4—C3—C2 | 119.3 (4) | N1—C12—C11 | 110.2 (3) |
C4—C3—H3 | 120.4 | N1—C12—H12A | 109.6 |
C2—C3—H3 | 120.4 | C11—C12—H12A | 109.6 |
C5—C4—C3 | 120.0 (4) | N1—C12—H12B | 109.6 |
C5—C4—H4 | 120.0 | C11—C12—H12B | 109.6 |
C3—C4—H4 | 120.0 | H12A—C12—H12B | 108.1 |
N1—C5—C4 | 119.2 (3) | O2—Cl1—O4 | 108.8 (2) |
N1—C5—C6 | 116.3 (3) | O2—Cl1—O3 | 110.1 (2) |
C4—C5—C6 | 124.5 (4) | O4—Cl1—O3 | 109.87 (19) |
N2—C6—C5 | 110.3 (3) | O2—Cl1—O1 | 109.6 (2) |
N2—C6—H6A | 109.6 | O4—Cl1—O1 | 109.6 (2) |
C5—C6—H6A | 109.6 | O3—Cl1—O1 | 108.8 (2) |
N2—C6—H6B | 109.6 | O5—Cl2—O7 | 110.9 (2) |
C5—C6—H6B | 109.6 | O5—Cl2—O8 | 112.5 (2) |
H6A—C6—H6B | 108.1 | O7—Cl2—O8 | 108.15 (19) |
N2—C7—C8 | 120.3 (4) | O5—Cl2—O6 | 107.4 (2) |
N2—C7—H7 | 119.8 | O7—Cl2—O6 | 110.2 (2) |
C8—C7—H7 | 119.8 | O8—Cl2—O6 | 107.6 (2) |
C5—N1—C1—C2 | −1.1 (6) | C11—N2—C7—C8 | −0.4 (6) |
C12—N1—C1—C2 | 179.0 (3) | C6—N2—C7—C8 | 179.4 (4) |
N1—C1—C2—C3 | 2.1 (6) | N2—C7—C8—C9 | −0.5 (6) |
C1—C2—C3—C4 | −1.6 (6) | C7—C8—C9—C10 | 1.2 (6) |
C2—C3—C4—C5 | 0.1 (6) | C8—C9—C10—C11 | −1.1 (6) |
C1—N1—C5—C4 | −0.5 (5) | C7—N2—C11—C10 | 0.5 (5) |
C12—N1—C5—C4 | 179.5 (3) | C6—N2—C11—C10 | −179.2 (3) |
C1—N1—C5—C6 | 178.8 (3) | C7—N2—C11—C12 | −179.9 (3) |
C12—N1—C5—C6 | −1.3 (5) | C6—N2—C11—C12 | 0.3 (4) |
C3—C4—C5—N1 | 0.9 (6) | C9—C10—C11—N2 | 0.2 (6) |
C3—C4—C5—C6 | −178.2 (4) | C9—C10—C11—C12 | −179.3 (4) |
C7—N2—C6—C5 | 136.2 (4) | C1—N1—C12—C11 | 137.8 (3) |
C11—N2—C6—C5 | −44.1 (4) | C5—N1—C12—C11 | −42.2 (4) |
N1—C5—C6—N2 | 44.5 (4) | N2—C11—C12—N1 | 42.6 (4) |
C4—C5—C6—N2 | −136.4 (4) | C10—C11—C12—N1 | −137.9 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O1 | 0.93 | 2.49 | 3.358 (6) | 156 |
C2—H2···O1i | 0.93 | 2.57 | 3.160 (5) | 122 |
C4—H4···O6i | 0.93 | 2.54 | 3.228 (5) | 132 |
C6—H6B···O3ii | 0.97 | 2.56 | 3.343 (5) | 137 |
C7—H7···O6iii | 0.93 | 2.45 | 3.249 (5) | 144 |
C9—H9···O7iv | 0.93 | 2.44 | 3.190 (5) | 138 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x−1, y, z; (iii) −x, y+1/2, −z+1/2; (iv) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H12N22+·2ClO4− |
Mr | 383.14 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 8.1632 (8), 13.9396 (14), 13.5903 (13) |
β (°) | 96.023 (2) |
V (Å3) | 1537.9 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.47 |
Crystal size (mm) | 0.22 × 0.16 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.646, 0.954 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11269, 3809, 1871 |
Rint | 0.068 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.058, 0.163, 1.06 |
No. of reflections | 3809 |
No. of parameters | 217 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.39, −0.48 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O1 | 0.93 | 2.49 | 3.358 (6) | 155.5 |
C2—H2···O1i | 0.93 | 2.57 | 3.160 (5) | 121.9 |
C4—H4···O6i | 0.93 | 2.54 | 3.228 (5) | 131.6 |
C6—H6B···O3ii | 0.97 | 2.56 | 3.343 (5) | 137.4 |
C7—H7···O6iii | 0.93 | 2.45 | 3.249 (5) | 144.2 |
C9—H9···O7iv | 0.93 | 2.44 | 3.190 (5) | 138.0 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x−1, y, z; (iii) −x, y+1/2, −z+1/2; (iv) x, −y+1/2, z+1/2. |
Acknowledgements
This work was supported by the Korea Research Foundation Grant funded by the Korean Government (MOEHRD) (KRF-2007–412-J02001).
References
Bruker (2000). SADABS, SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bryce, M. R., Eaves, J. G., Parker, D., Howard, J. A. K. & Johnson, O. (1985). J. Chem. Soc. Perkin Trans. 2, pp. 433–436. CSD CrossRef Google Scholar
Eaves, J. G., Parker, D. & Rudgewick-Brown, N. (1986). Can. J. Chem. 64, 1711–1713. CrossRef CAS Web of Science Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The asymmetric unit of the title compound, C12H12N22+.2ClO4-, consists of a 6,12-dihydrodipyrido[1,2-a:1',2'-d]pyrazinium dication and two perchlorate counter-anions (Fig. 1). In the dication, two pyridine rings are linked by two methylene groups and the bridgehead N atoms are disposed on the opposite side of the central six-membered ring which adopts an eclipsed boat conforamtion. The two methylene C atoms (C6 and C12) lie practically on the pyridine ring planes with the largest deviations 0.046 (6) Å (C6) and 0.023 (6) Å (C12) from the respective least-squares planes, and the dihedral angles between these planes is 44.8 (1)°. The geometry of the ClO4- anions is nearly tetrahedral with the O—Cl—O bond angles of 107.4 (2)°–112.5 (2)°, and the Cl—O bond distances are almost equal (1.416 (3)–1.426 (3) Å). The compound displays intermolecular C—H···O hydrogen bonds (Table 1 and Fig. 2). There may also be weak intermolecular π-π interactions between adjacent pyridine rings, with a shortest centroid-centroid distance of 5.057 (2) Å.