organic compounds
1-Cyclohexyl-2-(3-furyl)-1H-benzimidazole-5-carboxylic acid
aUniversity of California, San Diego, 9500 Gilman Drive # 0358, La Jolla, CA 92093-0358, USA
*Correspondence e-mail: tch@ucsd.edu
The 18H18N2O3, contains two molecules. The fused rings of both molecules are almost planar, with dihedral angles of 3.1 (1) and 2.8 (2)° between the fused rings. The furan rings are rotated by 43.85 (15) and −21.07 (9)° with respect to the planes of the attached bnzimidazole systems. In the crystal, molecules are linked into infinite chains by intermolecular O—H⋯N hydrogen bonds.
of the title compound, CRelated literature
For general background, see Beaulieu et al. (2004a). For the synthesis, see Beaulieu et al. (2004b).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809031213/rk2157sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809031213/rk2157Isup2.hkl
1-Cyclohexyl-2-(furan-3-yl)-1H-benzo[d]imidazole-5-carboxylic acid was prepared according to the literature procedure (Beaulieu et al., 2004b). In a sample vial, 15 mg of compound was taken and dissolved in CH2Cl2–DMSO/ 9:1 mixture. Upon slow evaporation at 273 K within 2 months the crystals are formed as colourless blocks.
Acidic H2 and H4 hydrgen atoms were located in a Fourier difference map and refined freely with distances obtained for O2—H2 = 1.00 (5) and O4—H4 = 0.76 (5). Other H atoms were positioned geometrically and refined using a riding model with C—H = 0.95–0.99 Å and with Uiso(H) = 1.2 Ueq(C).
The highest density value is peak with a value of 0.73 e Å-3 at coordinates 0.5281 0.1307 0.9370 that is 1.21Å from atom H6 and 1.24Å from atom C17.
1455 Friedel pairs were merged.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C18H18N2O3 | F(000) = 656 |
Mr = 310.34 | Dx = 1.311 Mg m−3 |
Monoclinic, P21 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: P 2yb | Cell parameters from 5005 reflections |
a = 9.1402 (3) Å | θ = 2.9–65.6° |
b = 11.2446 (3) Å | µ = 0.74 mm−1 |
c = 15.6061 (5) Å | T = 100 K |
β = 101.334 (2)° | Block, colourless |
V = 1572.68 (8) Å3 | 0.50 × 0.50 × 0.45 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 4379 independent reflections |
Radiation source: fine-focus sealed tube | 4006 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ϕ and ω scans | θmax = 66.4°, θmin = 2.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −10→10 |
Tmin = 0.710, Tmax = 0.733 | k = −13→12 |
7859 measured reflections | l = −18→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.143 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0919P)2 + 0.4805P] where P = (Fo2 + 2Fc2)/3 |
4379 reflections | (Δ/σ)max = 0.007 |
423 parameters | Δρmax = 0.73 e Å−3 |
1 restraint | Δρmin = −0.29 e Å−3 |
C18H18N2O3 | V = 1572.68 (8) Å3 |
Mr = 310.34 | Z = 4 |
Monoclinic, P21 | Cu Kα radiation |
a = 9.1402 (3) Å | µ = 0.74 mm−1 |
b = 11.2446 (3) Å | T = 100 K |
c = 15.6061 (5) Å | 0.50 × 0.50 × 0.45 mm |
β = 101.334 (2)° |
Bruker APEXII CCD area-detector diffractometer | 4379 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 4006 reflections with I > 2σ(I) |
Tmin = 0.710, Tmax = 0.733 | Rint = 0.027 |
7859 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 1 restraint |
wR(F2) = 0.143 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.73 e Å−3 |
4379 reflections | Δρmin = −0.29 e Å−3 |
423 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.5638 (3) | 0.67629 (19) | 0.56838 (16) | 0.0384 (6) | |
O2 | 0.5668 (3) | 0.5223 (2) | 0.47898 (14) | 0.0335 (5) | |
H2 | 0.574 (5) | 0.581 (4) | 0.432 (3) | 0.059 (13)* | |
O3 | 0.3079 (3) | −0.1746 (2) | 0.74288 (17) | 0.0496 (7) | |
N1 | 0.4370 (3) | 0.2274 (3) | 0.79176 (17) | 0.0330 (6) | |
N2 | 0.4291 (3) | 0.1685 (2) | 0.65399 (17) | 0.0283 (6) | |
C1 | 0.5558 (3) | 0.5707 (3) | 0.5547 (2) | 0.0292 (7) | |
C2 | 0.5294 (4) | 0.4824 (3) | 0.6213 (2) | 0.0277 (7) | |
C3 | 0.5382 (4) | 0.5195 (3) | 0.7078 (2) | 0.0345 (8) | |
H3 | 0.5628 | 0.6000 | 0.7224 | 0.041* | |
C4 | 0.5126 (4) | 0.4436 (3) | 0.7724 (2) | 0.0358 (8) | |
H4B | 0.5186 | 0.4696 | 0.8309 | 0.043* | |
C5 | 0.4767 (4) | 0.3249 (3) | 0.7470 (2) | 0.0297 (7) | |
C6 | 0.4321 (5) | 0.2198 (4) | 0.8860 (2) | 0.0465 (9) | |
H6 | 0.4030 | 0.1356 | 0.8946 | 0.056* | |
C7 | 0.3093 (4) | 0.2922 (4) | 0.9103 (2) | 0.0448 (9) | |
H7A | 0.2132 | 0.2687 | 0.8728 | 0.054* | |
H7B | 0.3265 | 0.3773 | 0.8991 | 0.054* | |
C8 | 0.2991 (6) | 0.2766 (6) | 1.0046 (3) | 0.0717 (15) | |
H8A | 0.2319 | 0.3385 | 1.0203 | 0.086* | |
H8B | 0.2534 | 0.1983 | 1.0116 | 0.086* | |
C9 | 0.4430 (6) | 0.2838 (8) | 1.0658 (3) | 0.093 (2) | |
H9A | 0.4290 | 0.2613 | 1.1250 | 0.111* | |
H9B | 0.4793 | 0.3669 | 1.0684 | 0.111* | |
C10 | 0.4080 (4) | 0.1373 (3) | 0.7332 (2) | 0.0310 (7) | |
C11 | 0.4698 (3) | 0.2865 (3) | 0.6616 (2) | 0.0267 (7) | |
C12 | 0.4959 (3) | 0.3654 (3) | 0.5968 (2) | 0.0267 (7) | |
H12 | 0.4909 | 0.3398 | 0.5383 | 0.032* | |
C13 | 0.3512 (4) | 0.0199 (3) | 0.7503 (2) | 0.0359 (8) | |
C14 | 0.3900 (5) | −0.0844 (3) | 0.7186 (3) | 0.0432 (9) | |
H14 | 0.4641 | −0.0935 | 0.6842 | 0.052* | |
C15 | 0.2130 (5) | −0.1246 (4) | 0.7902 (3) | 0.0476 (10) | |
H15 | 0.1418 | −0.1675 | 0.8149 | 0.057* | |
C16 | 0.2339 (4) | −0.0080 (3) | 0.7971 (2) | 0.0396 (9) | |
H16 | 0.1820 | 0.0464 | 0.8269 | 0.047* | |
C17 | 0.5769 (5) | 0.2333 (5) | 0.9441 (3) | 0.0608 (12) | |
H17A | 0.6121 | 0.3164 | 0.9421 | 0.073* | |
H17B | 0.6509 | 0.1803 | 0.9251 | 0.073* | |
C18 | 0.5620 (5) | 0.2013 (6) | 1.0386 (3) | 0.0738 (17) | |
H18A | 0.6591 | 0.2121 | 1.0790 | 0.089* | |
H18B | 0.5315 | 0.1172 | 1.0413 | 0.089* | |
O4 | −0.0250 (4) | 1.0807 (2) | −0.01851 (16) | 0.0440 (7) | |
H4 | −0.071 (5) | 1.119 (4) | −0.053 (3) | 0.047 (13)* | |
O5 | −0.0456 (3) | 1.2233 (2) | 0.07781 (15) | 0.0367 (6) | |
O6 | 0.1913 (3) | 0.3434 (2) | 0.23203 (17) | 0.0481 (7) | |
N3 | 0.1075 (3) | 0.7453 (2) | 0.30021 (16) | 0.0274 (6) | |
N4 | 0.1229 (3) | 0.7088 (2) | 0.16093 (17) | 0.0294 (6) | |
C19 | −0.0173 (4) | 1.1217 (3) | 0.0617 (2) | 0.0313 (7) | |
C20 | 0.0290 (4) | 1.0279 (3) | 0.1289 (2) | 0.0306 (7) | |
C21 | 0.0299 (4) | 1.0543 (3) | 0.2180 (2) | 0.0339 (8) | |
H21 | 0.0115 | 1.1337 | 0.2340 | 0.041* | |
C22 | 0.0563 (4) | 0.9688 (3) | 0.2813 (2) | 0.0336 (8) | |
H22 | 0.0563 | 0.9879 | 0.3406 | 0.040* | |
C23 | 0.0834 (4) | 0.8530 (3) | 0.2568 (2) | 0.0277 (7) | |
C24 | 0.0788 (4) | 0.7156 (3) | 0.3880 (2) | 0.0344 (8) | |
H24 | 0.0636 | 0.6275 | 0.3874 | 0.041* | |
C25 | −0.0670 (4) | 0.7689 (4) | 0.4042 (2) | 0.0447 (9) | |
H25A | −0.0587 | 0.8566 | 0.4073 | 0.054* | |
H25B | −0.1496 | 0.7481 | 0.3553 | 0.054* | |
C26 | −0.1004 (4) | 0.7210 (4) | 0.4894 (2) | 0.0508 (10) | |
H26A | −0.1911 | 0.7603 | 0.5016 | 0.061* | |
H26B | −0.1207 | 0.6346 | 0.4834 | 0.061* | |
C27 | 0.0277 (4) | 0.7422 (4) | 0.5646 (2) | 0.0462 (9) | |
H27A | 0.0047 | 0.7054 | 0.6181 | 0.055* | |
H27B | 0.0401 | 0.8288 | 0.5750 | 0.055* | |
C28 | 0.1737 (4) | 0.6900 (4) | 0.5466 (2) | 0.0470 (10) | |
H28A | 0.2567 | 0.7105 | 0.5954 | 0.056* | |
H28B | 0.1657 | 0.6022 | 0.5432 | 0.056* | |
C29 | 0.2072 (4) | 0.7384 (4) | 0.4609 (2) | 0.0414 (9) | |
H29A | 0.2263 | 0.8250 | 0.4665 | 0.050* | |
H29B | 0.2978 | 0.6996 | 0.4483 | 0.050* | |
C30 | 0.1327 (4) | 0.6622 (3) | 0.2394 (2) | 0.0275 (7) | |
C31 | 0.0913 (4) | 0.8276 (3) | 0.1692 (2) | 0.0284 (7) | |
C32 | 0.0629 (4) | 0.9149 (3) | 0.1045 (2) | 0.0314 (7) | |
H32 | 0.0669 | 0.8971 | 0.0455 | 0.038* | |
C33 | 0.1669 (4) | 0.5375 (3) | 0.2578 (2) | 0.0316 (8) | |
C34 | 0.1464 (5) | 0.4501 (3) | 0.1967 (2) | 0.0427 (9) | |
H34 | 0.1056 | 0.4624 | 0.1365 | 0.051* | |
C35 | 0.2435 (4) | 0.3639 (3) | 0.3181 (2) | 0.0402 (9) | |
H35 | 0.2833 | 0.3044 | 0.3594 | 0.048* | |
C36 | 0.2317 (4) | 0.4778 (3) | 0.3373 (2) | 0.0396 (9) | |
H36 | 0.2607 | 0.5132 | 0.3933 | 0.047* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0570 (15) | 0.0210 (11) | 0.0376 (13) | −0.0062 (11) | 0.0105 (11) | −0.0037 (10) |
O2 | 0.0536 (14) | 0.0232 (11) | 0.0261 (12) | −0.0006 (10) | 0.0141 (10) | 0.0000 (10) |
O3 | 0.0725 (19) | 0.0356 (14) | 0.0444 (15) | −0.0083 (13) | 0.0205 (13) | 0.0069 (12) |
N1 | 0.0425 (15) | 0.0356 (15) | 0.0242 (13) | 0.0028 (13) | 0.0148 (11) | 0.0024 (12) |
N2 | 0.0379 (14) | 0.0243 (13) | 0.0250 (14) | −0.0011 (11) | 0.0117 (11) | 0.0048 (11) |
C1 | 0.0297 (16) | 0.0297 (17) | 0.0278 (17) | −0.0007 (13) | 0.0047 (13) | −0.0006 (13) |
C2 | 0.0328 (16) | 0.0237 (15) | 0.0275 (16) | 0.0003 (13) | 0.0079 (13) | −0.0013 (13) |
C3 | 0.0452 (19) | 0.0275 (16) | 0.0318 (17) | −0.0029 (15) | 0.0103 (14) | −0.0042 (15) |
C4 | 0.048 (2) | 0.0358 (19) | 0.0259 (17) | −0.0027 (16) | 0.0119 (14) | −0.0061 (15) |
C5 | 0.0321 (17) | 0.0330 (17) | 0.0270 (16) | 0.0006 (14) | 0.0132 (13) | 0.0022 (14) |
C6 | 0.059 (2) | 0.059 (2) | 0.0251 (18) | 0.012 (2) | 0.0184 (16) | 0.0053 (18) |
C7 | 0.044 (2) | 0.065 (3) | 0.0292 (18) | 0.0042 (19) | 0.0172 (15) | −0.0026 (18) |
C8 | 0.080 (3) | 0.104 (4) | 0.039 (2) | 0.023 (3) | 0.031 (2) | 0.001 (3) |
C9 | 0.065 (3) | 0.181 (7) | 0.036 (2) | 0.018 (4) | 0.020 (2) | −0.018 (3) |
C10 | 0.0334 (17) | 0.0314 (17) | 0.0308 (18) | 0.0010 (14) | 0.0129 (14) | −0.0003 (14) |
C11 | 0.0290 (15) | 0.0250 (15) | 0.0272 (16) | 0.0008 (13) | 0.0078 (12) | 0.0015 (13) |
C12 | 0.0337 (17) | 0.0238 (15) | 0.0239 (15) | −0.0008 (13) | 0.0090 (13) | 0.0002 (13) |
C13 | 0.0413 (19) | 0.0357 (18) | 0.0326 (18) | −0.0024 (16) | 0.0116 (14) | 0.0075 (15) |
C14 | 0.059 (2) | 0.0337 (19) | 0.042 (2) | −0.0020 (18) | 0.0239 (17) | 0.0069 (16) |
C15 | 0.059 (2) | 0.049 (2) | 0.040 (2) | −0.0145 (19) | 0.0240 (18) | 0.0060 (18) |
C16 | 0.044 (2) | 0.039 (2) | 0.0387 (19) | −0.0033 (16) | 0.0165 (16) | 0.0024 (16) |
C17 | 0.053 (2) | 0.087 (3) | 0.046 (2) | 0.002 (2) | 0.0174 (19) | −0.006 (2) |
C18 | 0.052 (2) | 0.140 (5) | 0.029 (2) | 0.014 (3) | 0.0087 (18) | −0.004 (3) |
O4 | 0.080 (2) | 0.0250 (12) | 0.0266 (14) | 0.0108 (13) | 0.0106 (13) | 0.0031 (11) |
O5 | 0.0565 (15) | 0.0239 (12) | 0.0341 (13) | 0.0049 (11) | 0.0194 (10) | −0.0001 (10) |
O6 | 0.0618 (17) | 0.0331 (13) | 0.0502 (16) | 0.0133 (12) | 0.0132 (13) | 0.0068 (12) |
N3 | 0.0308 (13) | 0.0306 (13) | 0.0229 (13) | 0.0004 (11) | 0.0102 (11) | 0.0017 (11) |
N4 | 0.0412 (15) | 0.0223 (13) | 0.0264 (14) | −0.0007 (11) | 0.0110 (11) | 0.0007 (11) |
C19 | 0.0425 (19) | 0.0275 (18) | 0.0264 (17) | −0.0039 (15) | 0.0128 (14) | −0.0035 (14) |
C20 | 0.0419 (18) | 0.0232 (15) | 0.0286 (16) | −0.0032 (14) | 0.0119 (13) | −0.0026 (13) |
C21 | 0.049 (2) | 0.0245 (17) | 0.0315 (18) | −0.0046 (14) | 0.0153 (15) | −0.0053 (14) |
C22 | 0.046 (2) | 0.0330 (17) | 0.0237 (16) | −0.0020 (15) | 0.0111 (14) | −0.0031 (15) |
C23 | 0.0319 (17) | 0.0284 (16) | 0.0252 (16) | −0.0003 (13) | 0.0115 (13) | 0.0021 (13) |
C24 | 0.0462 (19) | 0.0370 (18) | 0.0234 (16) | 0.0058 (16) | 0.0149 (14) | 0.0087 (15) |
C25 | 0.0390 (19) | 0.060 (2) | 0.037 (2) | 0.0021 (18) | 0.0117 (15) | 0.0075 (18) |
C26 | 0.045 (2) | 0.068 (3) | 0.044 (2) | −0.002 (2) | 0.0188 (17) | 0.003 (2) |
C27 | 0.055 (2) | 0.056 (2) | 0.0303 (18) | 0.0059 (19) | 0.0165 (16) | 0.0051 (18) |
C28 | 0.050 (2) | 0.060 (3) | 0.0288 (19) | −0.003 (2) | 0.0045 (16) | 0.0063 (18) |
C29 | 0.0390 (19) | 0.050 (2) | 0.0376 (19) | 0.0004 (17) | 0.0135 (15) | −0.0036 (17) |
C30 | 0.0303 (16) | 0.0280 (16) | 0.0266 (16) | −0.0033 (13) | 0.0115 (13) | 0.0032 (13) |
C31 | 0.0356 (17) | 0.0237 (15) | 0.0279 (16) | −0.0019 (13) | 0.0111 (13) | −0.0016 (13) |
C32 | 0.0461 (19) | 0.0281 (16) | 0.0220 (16) | −0.0053 (15) | 0.0115 (13) | −0.0027 (13) |
C33 | 0.0312 (17) | 0.0310 (17) | 0.0356 (18) | 0.0018 (14) | 0.0137 (14) | 0.0069 (15) |
C34 | 0.063 (2) | 0.0302 (18) | 0.038 (2) | 0.0144 (17) | 0.0168 (17) | 0.0068 (16) |
C35 | 0.0377 (19) | 0.037 (2) | 0.046 (2) | 0.0070 (15) | 0.0099 (16) | 0.0137 (17) |
C36 | 0.041 (2) | 0.040 (2) | 0.0349 (19) | 0.0012 (16) | 0.0021 (15) | 0.0108 (17) |
O1—C1 | 1.207 (4) | O4—C19 | 1.324 (4) |
O2—C1 | 1.322 (4) | O4—H4 | 0.75 (5) |
O2—H2 | 0.99 (5) | O5—C19 | 1.208 (4) |
O3—C14 | 1.359 (5) | O6—C34 | 1.350 (4) |
O3—C15 | 1.366 (5) | O6—C35 | 1.354 (5) |
N1—C10 | 1.355 (4) | N3—C23 | 1.383 (4) |
N1—C5 | 1.387 (4) | N3—C30 | 1.383 (4) |
N1—C6 | 1.482 (4) | N3—C24 | 1.482 (4) |
N2—C10 | 1.335 (4) | N4—C30 | 1.319 (4) |
N2—C11 | 1.377 (4) | N4—C31 | 1.378 (4) |
C1—C2 | 1.492 (5) | C19—C20 | 1.489 (5) |
C2—C12 | 1.387 (4) | C20—C32 | 1.378 (5) |
C2—C3 | 1.400 (4) | C20—C21 | 1.421 (5) |
C3—C4 | 1.376 (5) | C21—C22 | 1.366 (5) |
C3—H3 | 0.9500 | C21—H21 | 0.9500 |
C4—C5 | 1.411 (5) | C22—C23 | 1.393 (5) |
C4—H4B | 0.9500 | C22—H22 | 0.9500 |
C5—C11 | 1.391 (4) | C23—C31 | 1.413 (4) |
C6—C17 | 1.459 (6) | C24—C29 | 1.488 (5) |
C6—C7 | 1.495 (6) | C24—C25 | 1.528 (5) |
C6—H6 | 1.0000 | C24—H24 | 1.0000 |
C7—C8 | 1.504 (5) | C25—C26 | 1.518 (5) |
C7—H7A | 0.9900 | C25—H25A | 0.9900 |
C7—H7B | 0.9900 | C25—H25B | 0.9900 |
C8—C9 | 1.468 (7) | C26—C27 | 1.505 (5) |
C8—H8A | 0.9900 | C26—H26A | 0.9900 |
C8—H8B | 0.9900 | C26—H26B | 0.9900 |
C9—C18 | 1.550 (8) | C27—C28 | 1.533 (6) |
C9—H9A | 0.9900 | C27—H27A | 0.9900 |
C9—H9B | 0.9900 | C27—H27B | 0.9900 |
C10—C13 | 1.462 (5) | C28—C29 | 1.530 (5) |
C11—C12 | 1.401 (4) | C28—H28A | 0.9900 |
C12—H12 | 0.9500 | C28—H28B | 0.9900 |
C13—C14 | 1.346 (5) | C29—H29A | 0.9900 |
C13—C16 | 1.447 (5) | C29—H29B | 0.9900 |
C14—H14 | 0.9500 | C30—C33 | 1.452 (5) |
C15—C16 | 1.326 (6) | C31—C32 | 1.396 (5) |
C15—H15 | 0.9500 | C32—H32 | 0.9500 |
C16—H16 | 0.9500 | C33—C34 | 1.358 (5) |
C17—C18 | 1.549 (6) | C33—C36 | 1.433 (4) |
C17—H17A | 0.9900 | C34—H34 | 0.9500 |
C17—H17B | 0.9900 | C35—C36 | 1.324 (5) |
C18—H18A | 0.9900 | C35—H35 | 0.9500 |
C18—H18B | 0.9900 | C36—H36 | 0.9500 |
C1—O2—H2 | 114 (3) | C19—O4—H4 | 114 (3) |
C14—O3—C15 | 106.7 (3) | C34—O6—C35 | 105.9 (3) |
C10—N1—C5 | 106.7 (3) | C23—N3—C30 | 106.7 (2) |
C10—N1—C6 | 125.9 (3) | C23—N3—C24 | 127.5 (3) |
C5—N1—C6 | 127.4 (3) | C30—N3—C24 | 124.4 (3) |
C10—N2—C11 | 105.0 (3) | C30—N4—C31 | 106.0 (3) |
O1—C1—O2 | 123.4 (3) | O5—C19—O4 | 123.5 (3) |
O1—C1—C2 | 122.9 (3) | O5—C19—C20 | 124.5 (3) |
O2—C1—C2 | 113.6 (3) | O4—C19—C20 | 111.9 (3) |
C12—C2—C3 | 121.1 (3) | C32—C20—C21 | 120.4 (3) |
C12—C2—C1 | 119.7 (3) | C32—C20—C19 | 120.5 (3) |
C3—C2—C1 | 119.2 (3) | C21—C20—C19 | 119.1 (3) |
C4—C3—C2 | 122.3 (3) | C22—C21—C20 | 121.8 (3) |
C4—C3—H3 | 118.8 | C22—C21—H21 | 119.1 |
C2—C3—H3 | 118.8 | C20—C21—H21 | 119.1 |
C3—C4—C5 | 116.4 (3) | C21—C22—C23 | 118.4 (3) |
C3—C4—H4B | 121.8 | C21—C22—H22 | 120.8 |
C5—C4—H4B | 121.8 | C23—C22—H22 | 120.8 |
N1—C5—C11 | 105.6 (3) | N3—C23—C22 | 134.8 (3) |
N1—C5—C4 | 132.5 (3) | N3—C23—C31 | 105.3 (3) |
C11—C5—C4 | 121.8 (3) | C22—C23—C31 | 119.9 (3) |
C17—C6—N1 | 114.3 (3) | N3—C24—C29 | 114.3 (3) |
C17—C6—C7 | 114.9 (4) | N3—C24—C25 | 112.6 (3) |
N1—C6—C7 | 113.0 (3) | C29—C24—C25 | 112.8 (3) |
C17—C6—H6 | 104.4 | N3—C24—H24 | 105.4 |
N1—C6—H6 | 104.4 | C29—C24—H24 | 105.4 |
C7—C6—H6 | 104.4 | C25—C24—H24 | 105.4 |
C6—C7—C8 | 112.3 (3) | C26—C25—C24 | 109.8 (3) |
C6—C7—H7A | 109.2 | C26—C25—H25A | 109.7 |
C8—C7—H7A | 109.2 | C24—C25—H25A | 109.7 |
C6—C7—H7B | 109.2 | C26—C25—H25B | 109.7 |
C8—C7—H7B | 109.2 | C24—C25—H25B | 109.7 |
H7A—C7—H7B | 107.9 | H25A—C25—H25B | 108.2 |
C9—C8—C7 | 114.2 (4) | C27—C26—C25 | 111.5 (3) |
C9—C8—H8A | 108.7 | C27—C26—H26A | 109.3 |
C7—C8—H8A | 108.7 | C25—C26—H26A | 109.3 |
C9—C8—H8B | 108.7 | C27—C26—H26B | 109.3 |
C7—C8—H8B | 108.7 | C25—C26—H26B | 109.3 |
H8A—C8—H8B | 107.6 | H26A—C26—H26B | 108.0 |
C8—C9—C18 | 112.1 (5) | C26—C27—C28 | 111.6 (3) |
C8—C9—H9A | 109.2 | C26—C27—H27A | 109.3 |
C18—C9—H9A | 109.2 | C28—C27—H27A | 109.3 |
C8—C9—H9B | 109.2 | C26—C27—H27B | 109.3 |
C18—C9—H9B | 109.2 | C28—C27—H27B | 109.3 |
H9A—C9—H9B | 107.9 | H27A—C27—H27B | 108.0 |
N2—C10—N1 | 112.6 (3) | C29—C28—C27 | 110.8 (3) |
N2—C10—C13 | 121.8 (3) | C29—C28—H28A | 109.5 |
N1—C10—C13 | 125.5 (3) | C27—C28—H28A | 109.5 |
N2—C11—C5 | 110.1 (3) | C29—C28—H28B | 109.5 |
N2—C11—C12 | 129.0 (3) | C27—C28—H28B | 109.5 |
C5—C11—C12 | 120.8 (3) | H28A—C28—H28B | 108.1 |
C2—C12—C11 | 117.5 (3) | C24—C29—C28 | 110.1 (3) |
C2—C12—H12 | 121.2 | C24—C29—H29A | 109.6 |
C11—C12—H12 | 121.2 | C28—C29—H29A | 109.6 |
C14—C13—C16 | 105.7 (3) | C24—C29—H29B | 109.6 |
C14—C13—C10 | 126.2 (3) | C28—C29—H29B | 109.6 |
C16—C13—C10 | 127.8 (3) | H29A—C29—H29B | 108.1 |
C13—C14—O3 | 110.4 (3) | N4—C30—N3 | 112.2 (3) |
C13—C14—H14 | 124.8 | N4—C30—C33 | 122.7 (3) |
O3—C14—H14 | 124.8 | N3—C30—C33 | 125.1 (3) |
C16—C15—O3 | 110.7 (4) | N4—C31—C32 | 128.8 (3) |
C16—C15—H15 | 124.6 | N4—C31—C23 | 109.7 (3) |
O3—C15—H15 | 124.6 | C32—C31—C23 | 121.4 (3) |
C15—C16—C13 | 106.4 (4) | C20—C32—C31 | 117.9 (3) |
C15—C16—H16 | 126.8 | C20—C32—H32 | 121.1 |
C13—C16—H16 | 126.8 | C31—C32—H32 | 121.1 |
C6—C17—C18 | 109.2 (4) | C34—C33—C36 | 104.2 (3) |
C6—C17—H17A | 109.8 | C34—C33—C30 | 124.4 (3) |
C18—C17—H17A | 109.8 | C36—C33—C30 | 131.3 (3) |
C6—C17—H17B | 109.8 | O6—C34—C33 | 111.5 (3) |
C18—C17—H17B | 109.8 | O6—C34—H34 | 124.2 |
H17A—C17—H17B | 108.3 | C33—C34—H34 | 124.2 |
C17—C18—C9 | 108.6 (4) | C36—C35—O6 | 111.1 (3) |
C17—C18—H18A | 110.0 | C36—C35—H35 | 124.4 |
C9—C18—H18A | 110.0 | O6—C35—H35 | 124.4 |
C17—C18—H18B | 110.0 | C35—C36—C33 | 107.2 (3) |
C9—C18—H18B | 110.0 | C35—C36—H36 | 126.4 |
H18A—C18—H18B | 108.3 | C33—C36—H36 | 126.4 |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···N2i | 0.99 (5) | 1.66 (5) | 2.653 (3) | 173 (4) |
O4—H4···N4ii | 0.75 (5) | 1.94 (5) | 2.653 (4) | 159 (5) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) −x, y+1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C18H18N2O3 |
Mr | 310.34 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 9.1402 (3), 11.2446 (3), 15.6061 (5) |
β (°) | 101.334 (2) |
V (Å3) | 1572.68 (8) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.74 |
Crystal size (mm) | 0.50 × 0.50 × 0.45 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.710, 0.733 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7859, 4379, 4006 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.143, 1.06 |
No. of reflections | 4379 |
No. of parameters | 423 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.73, −0.29 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···N2i | 0.99 (5) | 1.66 (5) | 2.653 (3) | 173 (4) |
O4—H4···N4ii | 0.75 (5) | 1.94 (5) | 2.653 (4) | 159 (5) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) −x, y+1/2, −z. |
Acknowledgements
All authors contributed equally to this paper. We thank Bao Ho and Cody Higginson for help with compound synthesis and James Golen for help with the structural solution. This work was supported in part by the National Institutes of Health, grant R01 AI72012.
References
Beaulieu, P. L., Bös, M., Bousquet, Y., Fazal, G., Gauthier, J., Gillard, J., Goulet, S., LaPlante, S., Poupart, M. A., Lefebvre, S., McKercher, G., Pellerin, C., Austel, V. & Kukolj, G. (2004a). Bioorg. Med. Chem. Lett. 14, 119–124. Web of Science CrossRef PubMed CAS Google Scholar
Beaulieu, P. L., Bousquet, Y., Gauthier, J., Gillard, J., Marquis, M., McKercher, G., Pellerin, C., Valois, S. & Kukolj, G. (2004b). J. Med. Chem. 47, 6884–6892. Web of Science CrossRef PubMed CAS Google Scholar
Bruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound is an allosteric inhibitor of the RNA–dependent RNA polymerase NS5B of hepatitis C virus (HCV) (Beaulieu et al., 2004a). The inhibitor binds with low micromolar affinity (4.3 mM) to the NS5B polymerase and prevents replication of subgenomic HCV replicon in human cells (Beaulieu et al., 2004b). The title compound was synthesized following the route described by Beaulieu et al., (2004b). We report here the single–crystal X–ray structure.
Asymmetric unit of the title compound is composed of molecule 1 and molecule 2 (Fig. 1). They are linked together into infinite non–interacting chains by the intermolecular O2—H2···N2i and O4—H4···N4ii hydrogen bonds along the b axis (Fig. 2). Symmetry codes: (i) -x + 1, y + 1/2, -z + 1 and (ii) -x, y + 1/2, -z.