organic compounds
2-Hydroxyimino-N′-[1-(2-pyridyl)ethylidene]propanohydrazide
aNational Taras Shevchenko University, Department of Chemistry, Volodymyrska Str. 64, 01033 Kyiv, Ukraine, and bSCT `Institute for Syngle Crystals', National Acadamy of Science of Ukraine, Lenina Ave. 60, 61001 Kharkiv, Ukraine
*Correspondence e-mail: ysmoroz@yahoo.com
The title compound, C10H12N4O2, features an intramolecular N—H⋯N hydrogen bond formed between the imine NH and oxime N atoms. The oxime group and the amide C=O bond are anti to each other. In the crystal, molecules are connected by O—H⋯O hydrogen bonds into supramolecular zigzag chains along the c axis.
Related literature
For oxime and pyridine derivatives, see: Sliva et al. (1997b); Mokhir et al. (2002); Krämer et al. (2002); Kovbasyuk et al. (2004). For 2-hydroxyiminopropanamide and amide derivatives of 2-hydroxyiminopropanoic acid, see: Onindo et al. (1995); Duda et al. (1997); Sliva et al. (1997a). For the preparation and characterization of 3d-metal complexes with 2-hydroxyimino-N′-[1-(2-pyridyl)ethylidene]propanohydrazone, see: Moroz et al. (2008a,b). For typical bond lengths, see: Bürgi & Dunitz (1994).
Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536809033352/tk2523sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809033352/tk2523Isup2.hkl
All H atoms were observed in a difference Fourier map, but C—H hydrogen atoms were placed at calculated positions and treated as riding on their parent atoms [C—H = 0.93-0.96 Å and Uiso(H) = 1.2- 1.5Ueq(C)]. The N—H and O—H hydrogen atoms were fully refined; O-H = 0.84 (5) Å and N-H = 0.87 (4) Å. In the absence of significant
effects, 766 Friedel pairs were averaged in the final refinement.Data collection: CrysAlis CCD (Oxford Diffraction, 2006); cell
CrysAlis RED (Oxford Diffraction, 2006); data reduction: CrysAlis RED (Oxford Diffraction, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).C10H12N4O2 | F(000) = 464 |
Mr = 220.24 | Dx = 1.325 Mg m−3 |
Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C -2yc | Cell parameters from 5860 reflections |
a = 4.4498 (11) Å | θ = 3.6–32.0° |
b = 22.833 (7) Å | µ = 0.10 mm−1 |
c = 10.955 (3) Å | T = 293 K |
β = 97.47 (2)° | Needles, white |
V = 1103.7 (5) Å3 | 0.15 × 0.10 × 0.05 mm |
Z = 4 |
Oxford Diffraction KM-4/Xcalibur diffractometer with a Sapphire3 detector | 958 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 793 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.059 |
Detector resolution: 16.1827 pixels mm-1 | θmax = 25.0°, θmin = 3.6° |
ϕ scans and ω scans with κ offset | h = −5→5 |
Absorption correction: multi-scan (CrysAlis CCD; Oxford Diffraction, 2006) | k = −25→26 |
Tmin = 0.986, Tmax = 0.995 | l = −12→12 |
3899 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.097 | w = 1/[σ2(Fo2) + (0.0453P)2 + 0.2337P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
958 reflections | Δρmax = 0.13 e Å−3 |
155 parameters | Δρmin = −0.16 e Å−3 |
2 restraints | Absolute structure: nd |
Primary atom site location: structure-invariant direct methods |
C10H12N4O2 | V = 1103.7 (5) Å3 |
Mr = 220.24 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 4.4498 (11) Å | µ = 0.10 mm−1 |
b = 22.833 (7) Å | T = 293 K |
c = 10.955 (3) Å | 0.15 × 0.10 × 0.05 mm |
β = 97.47 (2)° |
Oxford Diffraction KM-4/Xcalibur diffractometer with a Sapphire3 detector | 958 independent reflections |
Absorption correction: multi-scan (CrysAlis CCD; Oxford Diffraction, 2006) | 793 reflections with I > 2σ(I) |
Tmin = 0.986, Tmax = 0.995 | Rint = 0.059 |
3899 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 2 restraints |
wR(F2) = 0.097 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | Δρmax = 0.13 e Å−3 |
958 reflections | Δρmin = −0.16 e Å−3 |
155 parameters | Absolute structure: nd |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | −0.4385 (8) | 0.29326 (15) | 0.1660 (4) | 0.0601 (10) | |
N2 | −0.0269 (7) | 0.41668 (13) | 0.0900 (3) | 0.0411 (8) | |
N3 | 0.1840 (7) | 0.45542 (13) | 0.1431 (3) | 0.0418 (8) | |
N4 | 0.6418 (7) | 0.52027 (13) | 0.2434 (3) | 0.0402 (8) | |
O1 | 0.1686 (7) | 0.50958 (13) | −0.0301 (3) | 0.0624 (9) | |
O2 | 0.8544 (6) | 0.55993 (14) | 0.2979 (3) | 0.0559 (8) | |
C1 | −0.3464 (9) | 0.33542 (16) | 0.0958 (4) | 0.0439 (10) | |
C2 | −0.4547 (11) | 0.3399 (2) | −0.0272 (4) | 0.0624 (13) | |
H2 | −0.3891 | 0.3701 | −0.0743 | 0.075* | |
C3 | −0.6589 (11) | 0.2998 (2) | −0.0793 (5) | 0.0763 (16) | |
H3 | −0.7310 | 0.3019 | −0.1628 | 0.092* | |
C4 | −0.7553 (11) | 0.2573 (2) | −0.0090 (5) | 0.0706 (15) | |
H4 | −0.8962 | 0.2296 | −0.0423 | 0.085* | |
C5 | −0.6403 (13) | 0.2558 (2) | 0.1128 (6) | 0.0750 (15) | |
H5 | −0.7085 | 0.2265 | 0.1614 | 0.090* | |
C6 | −0.1176 (8) | 0.37676 (17) | 0.1582 (3) | 0.0425 (10) | |
C7 | −0.0053 (11) | 0.3692 (2) | 0.2922 (4) | 0.0607 (13) | |
H7A | −0.0416 | 0.4044 | 0.3357 | 0.091* | |
H7B | 0.2082 | 0.3611 | 0.3022 | 0.091* | |
H7C | −0.1103 | 0.3372 | 0.3246 | 0.091* | |
C8 | 0.2702 (8) | 0.50043 (16) | 0.0783 (3) | 0.0405 (9) | |
C9 | 0.4981 (9) | 0.54051 (15) | 0.1430 (3) | 0.0404 (10) | |
C10 | 0.5493 (13) | 0.59805 (19) | 0.0889 (5) | 0.0755 (16) | |
H10A | 0.3634 | 0.6119 | 0.0440 | 0.113* | |
H10B | 0.7001 | 0.5945 | 0.0342 | 0.113* | |
H10C | 0.6177 | 0.6253 | 0.1534 | 0.113* | |
H3NA | 0.239 (8) | 0.4565 (15) | 0.222 (4) | 0.035 (10)* | |
H2OA | 0.932 (11) | 0.5383 (19) | 0.355 (5) | 0.061 (14)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.063 (2) | 0.045 (2) | 0.069 (3) | −0.013 (2) | −0.0028 (19) | 0.0015 (19) |
N2 | 0.0370 (18) | 0.0396 (16) | 0.0439 (18) | −0.0042 (15) | −0.0056 (14) | −0.0027 (15) |
N3 | 0.0436 (19) | 0.0436 (19) | 0.0353 (19) | −0.0083 (16) | −0.0062 (15) | −0.0009 (14) |
N4 | 0.0361 (18) | 0.0403 (17) | 0.0408 (18) | −0.0022 (15) | −0.0078 (14) | −0.0055 (14) |
O1 | 0.071 (2) | 0.0603 (18) | 0.0478 (17) | −0.0208 (16) | −0.0238 (15) | 0.0105 (14) |
O2 | 0.0555 (18) | 0.0570 (18) | 0.0478 (17) | −0.0045 (15) | −0.0220 (13) | −0.0013 (14) |
C1 | 0.036 (2) | 0.041 (2) | 0.054 (2) | 0.0004 (18) | 0.0032 (19) | −0.0047 (18) |
C2 | 0.068 (3) | 0.071 (3) | 0.046 (2) | −0.025 (3) | 0.002 (2) | −0.007 (2) |
C3 | 0.072 (4) | 0.089 (4) | 0.063 (3) | −0.026 (3) | −0.007 (3) | −0.020 (3) |
C4 | 0.051 (3) | 0.058 (3) | 0.100 (4) | −0.020 (2) | 0.000 (3) | −0.028 (3) |
C5 | 0.078 (4) | 0.052 (3) | 0.093 (4) | −0.028 (3) | 0.004 (3) | −0.003 (3) |
C6 | 0.045 (3) | 0.038 (2) | 0.043 (2) | 0.0000 (18) | 0.0022 (19) | −0.0043 (17) |
C7 | 0.075 (3) | 0.061 (3) | 0.044 (2) | −0.017 (2) | −0.005 (2) | −0.0039 (19) |
C8 | 0.040 (2) | 0.038 (2) | 0.039 (2) | 0.0029 (18) | −0.0085 (17) | 0.0004 (17) |
C9 | 0.047 (3) | 0.0368 (19) | 0.0342 (19) | 0.0021 (18) | −0.0066 (17) | −0.0001 (16) |
C10 | 0.087 (4) | 0.059 (3) | 0.069 (3) | −0.024 (3) | −0.034 (3) | 0.015 (3) |
N1—C5 | 1.320 (6) | C3—C4 | 1.345 (7) |
N1—C1 | 1.330 (5) | C3—H3 | 0.9300 |
N2—C6 | 1.277 (4) | C4—C5 | 1.366 (8) |
N2—N3 | 1.364 (4) | C4—H4 | 0.9300 |
N3—C8 | 1.334 (5) | C5—H5 | 0.9300 |
N3—H3NA | 0.87 (4) | C6—C7 | 1.498 (5) |
N4—C9 | 1.285 (5) | C7—H7A | 0.9600 |
N4—O2 | 1.388 (4) | C7—H7B | 0.9600 |
O1—C8 | 1.233 (4) | C7—H7C | 0.9600 |
O2—H2OA | 0.84 (5) | C8—C9 | 1.477 (5) |
C1—C2 | 1.374 (6) | C9—C10 | 1.471 (5) |
C1—C6 | 1.488 (5) | C10—H10A | 0.9600 |
C2—C3 | 1.362 (6) | C10—H10B | 0.9600 |
C2—H2 | 0.9300 | C10—H10C | 0.9600 |
C5—N1—C1 | 117.2 (4) | N2—C6—C1 | 115.7 (3) |
C6—N2—N3 | 117.7 (3) | N2—C6—C7 | 124.4 (4) |
C8—N3—N2 | 120.1 (3) | C1—C6—C7 | 119.9 (4) |
C8—N3—H3NA | 116 (2) | C6—C7—H7A | 109.5 |
N2—N3—H3NA | 122 (2) | C6—C7—H7B | 109.5 |
C9—N4—O2 | 111.7 (3) | H7A—C7—H7B | 109.5 |
N4—O2—H2OA | 97 (3) | C6—C7—H7C | 109.5 |
N1—C1—C2 | 121.7 (4) | H7A—C7—H7C | 109.5 |
N1—C1—C6 | 115.9 (3) | H7B—C7—H7C | 109.5 |
C2—C1—C6 | 122.4 (4) | O1—C8—N3 | 123.3 (4) |
C3—C2—C1 | 119.4 (5) | O1—C8—C9 | 120.0 (3) |
C3—C2—H2 | 120.3 | N3—C8—C9 | 116.7 (3) |
C1—C2—H2 | 120.3 | N4—C9—C10 | 125.5 (4) |
C4—C3—C2 | 119.3 (5) | N4—C9—C8 | 115.0 (3) |
C4—C3—H3 | 120.3 | C10—C9—C8 | 119.5 (3) |
C2—C3—H3 | 120.3 | C9—C10—H10A | 109.5 |
C3—C4—C5 | 118.1 (4) | C9—C10—H10B | 109.5 |
C3—C4—H4 | 121.0 | H10A—C10—H10B | 109.5 |
C5—C4—H4 | 121.0 | C9—C10—H10C | 109.5 |
N1—C5—C4 | 124.2 (5) | H10A—C10—H10C | 109.5 |
N1—C5—H5 | 117.9 | H10B—C10—H10C | 109.5 |
C4—C5—H5 | 117.9 | ||
C6—N2—N3—C8 | −175.2 (3) | C2—C1—C6—N2 | −0.3 (6) |
C5—N1—C1—C2 | −0.3 (6) | N1—C1—C6—C7 | 0.2 (5) |
C5—N1—C1—C6 | −179.7 (4) | C2—C1—C6—C7 | −179.2 (4) |
N1—C1—C2—C3 | −0.9 (7) | N2—N3—C8—O1 | −0.1 (6) |
C6—C1—C2—C3 | 178.5 (4) | N2—N3—C8—C9 | 179.6 (3) |
C1—C2—C3—C4 | 1.3 (8) | O2—N4—C9—C10 | 0.7 (6) |
C2—C3—C4—C5 | −0.7 (8) | O2—N4—C9—C8 | 179.1 (3) |
C1—N1—C5—C4 | 0.9 (8) | O1—C8—C9—N4 | −164.0 (4) |
C3—C4—C5—N1 | −0.5 (9) | N3—C8—C9—N4 | 16.3 (5) |
N3—N2—C6—C1 | −179.7 (3) | O1—C8—C9—C10 | 14.5 (6) |
N3—N2—C6—C7 | −0.8 (5) | N3—C8—C9—C10 | −165.2 (4) |
N1—C1—C6—N2 | 179.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2OA···O1i | 0.84 (5) | 1.88 (5) | 2.709 (4) | 170 (5) |
N3—H3NA···N4 | 0.87 (4) | 2.30 (4) | 2.640 (4) | 104 (3) |
Symmetry code: (i) x+1, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C10H12N4O2 |
Mr | 220.24 |
Crystal system, space group | Monoclinic, Cc |
Temperature (K) | 293 |
a, b, c (Å) | 4.4498 (11), 22.833 (7), 10.955 (3) |
β (°) | 97.47 (2) |
V (Å3) | 1103.7 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.15 × 0.10 × 0.05 |
Data collection | |
Diffractometer | Oxford Diffraction KM-4/Xcalibur diffractometer with a Sapphire3 detector |
Absorption correction | Multi-scan (CrysAlis CCD; Oxford Diffraction, 2006) |
Tmin, Tmax | 0.986, 0.995 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3899, 958, 793 |
Rint | 0.059 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.097, 1.10 |
No. of reflections | 958 |
No. of parameters | 155 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.13, −0.16 |
Absolute structure | Nd |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2006), CrysAlis RED (Oxford Diffraction, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2OA···O1i | 0.84 (5) | 1.88 (5) | 2.709 (4) | 170 (5) |
N3—H3NA···N4 | 0.87 (4) | 2.30 (4) | 2.640 (4) | 104 (3) |
Symmetry code: (i) x+1, −y+1, z+1/2. |
Acknowledgements
The authors thank the Ministry of Education and Science of Ukraine for financial support (grant No. F28/241–2009).
References
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As a part of our on-going work, we would like to report the structure of the title compound (I), Fig. 1, which comprises several groups capable of forming hydrogen bonding interactions: oxime, hydrazone, azomethine, and pyridine. Molecule (I) has been shown previously to form mono- and tetra-nuclear grid-like complexes with 3d-metals (Moroz et al., 2008a,b).
The C—N and N—O bond lengths in the oxime group, i.e. 1.285 (5) and 1.388 (4) Å, respectively, adopt typical values (Sliva et al., 1997b; Mokhir et al., 2002). The oxime group is in an anti- position with respect to the amide group, an observation consistent with the structures of 2-hydroxyiminopropanamide and other amide derivatives of 2-hydroxyiminopropanoic acid (Onindo et al., 1995; Duda et al., 1997; Sliva et al., 1997a). This conformation is stabilised by an N3—H···N4 intramolecular interaction, Table 1. The CH3C(=NOH)C(O)NH fragment deviates from planarity as seen in a twist between the oxime and amide groups about the C8—C9 bond; the O1-C8-C9-N4 torsion angle is -164.0 (4)°. The flattened geometry of molecule results in the appearance of short intramolecular contacts H10···O2 is 2.34 Å and H7C···H3N 2.28 Å. The C—N bond distance in the azomethine group is 1.277 (4) Å, and the N2—C6—C1 angle is 115.7 (3)°. The pyridine-N atom is situated in an anti- position with respect to the azomethine group. Finally, the C—N and C—C bond lengths within the pyridine ring are normal for 2-substituted pyridine derivatives (Krämer et al., 2002; Kovbasyuk et al., 2004).
In the crystal packing molecules are united by O2—H···O1 hydrogen bonds, Table 1, where oximic-oxygen atom acts as donor and the hydrazone-oxygen atom acts as an acceptor (Fig. 2). This interaction probably results in the elongation of the C8—O1 bond to 1.233 (4) Å as compared with its mean value 1.210 Å (Bürgi & Dunitz, 1994). Due to the presence of the O2—H···O1 hydrogen bonds, zig-zag supramolecular chains are formed along the c axis.