organic compounds
Isopropyl 2-(5-fluoro-3-methylsulfinyl-1-benzofuran-2-yl)acetate
aDepartment of Chemistry, Dongeui University, San 24 Kaya-dong Busanjin-gu, Busan 614-714, Republic of Korea, and bDepartment of Chemistry, Pukyong National University, 599-1 Daeyeon 3-dong, Nam-gu, Busan 608-737, Republic of Korea
*Correspondence e-mail: uklee@pknu.ac.kr
In the title compound, C14H15FO4S, the O atom and the methyl group of the methylsulfinyl substituent are located on opposite sides of the plane of the benzofuran fragment which is essentially planar with a mean deviation of 0.008 (1) Å from its least-squares plane. The stabilized by three different intermolecular non-classical C—H⋯O hydrogen bonds. The also exhibits aromatic π–π interactions between the benzene rings of adjacent benzofuran ring systems [centroid–centroid distance = 3.688 (2) Å]
Related literature
For the crystal structures of similar alkyl 2-(5-fluoro-3-methylsulfinyl-1-benzofuran-2-yl) acetate derivatives, see: Choi et al. (2009a,b). For the pharmacological activity of benzofuran compounds, see: Howlett et al. (1999); Twyman & Allsop (1999).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536809037003/bq2158sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809037003/bq2158Isup2.hkl
77% 3-chloroperoxybenzoic acid (247 mg, 1.1 mmol) was added in small portions to a stirred solution of isopropyl 2-(5-fluoro-3-methylsulfanyl-1-benzofuran-2-yl) acetate (282 mg, 1.0 mmol) in dichloromethane (30 ml) at 273 K. After being stirred for 4 h at room temperature, the mixture was washed with saturated sodium bicarbonate solution and the organic layer was separated, dried over magnesium sulfate, filtered and concentrated in vacuum. The residue was purified by
(hexane–ethyl acetate, 1:2 v/v) to afford the title compound as a colorless solid [yield 83%, m.p. 391–392 K; Rf = 0.67 (hexane–ethyl acetate, 1;2 v/v )]. Single crystals suitable for X-ray diffraction were prepared by evaporation of a solution of the title compound in acetone at room temperature. Spectroscopic analysis: EI-MS 298 [M+].All H atoms were geometrically positioned and refined using a riding model, with C—H = 0.93 Å for the aryl, 0.97 Å for the methine, 0.98 Å for the methylene, and 0.96 Å for the methyl H atoms. Uiso(H) = 1.2Ueq(C) for the aryl, methine, and methylene H atoms, and 1.5Ueq(C) for the methyl H atoms.
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97 (Bruker, 2001).C14H15FO4S | F(000) = 624 |
Mr = 298.32 | Dx = 1.416 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5216 reflections |
a = 11.6332 (6) Å | θ = 2.3–27.4° |
b = 14.9522 (7) Å | µ = 0.25 mm−1 |
c = 8.2333 (4) Å | T = 173 K |
β = 102.277 (1)° | Block, colorless |
V = 1399.36 (12) Å3 | 0.25 × 0.20 × 0.16 mm |
Z = 4 |
Bruker SMART CCD diffractometer | 3173 independent reflections |
Radiation source: fine-focus sealed tube | 2476 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
Detector resolution: 10.0 pixels mm-1 | θmax = 27.5°, θmin = 1.8° |
ϕ and ω scans | h = −14→15 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | k = −19→19 |
Tmin = 0.940, Tmax = 0.961 | l = −10→10 |
12229 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0423P)2 + 0.5417P] where P = (Fo2 + 2Fc2)/3 |
3173 reflections | (Δ/σ)max = 0.001 |
182 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.39 e Å−3 |
C14H15FO4S | V = 1399.36 (12) Å3 |
Mr = 298.32 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.6332 (6) Å | µ = 0.25 mm−1 |
b = 14.9522 (7) Å | T = 173 K |
c = 8.2333 (4) Å | 0.25 × 0.20 × 0.16 mm |
β = 102.277 (1)° |
Bruker SMART CCD diffractometer | 3173 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 2476 reflections with I > 2σ(I) |
Tmin = 0.940, Tmax = 0.961 | Rint = 0.043 |
12229 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.39 e Å−3 |
3173 reflections | Δρmin = −0.39 e Å−3 |
182 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S | 0.16889 (4) | 0.32823 (3) | 0.59899 (5) | 0.02546 (13) | |
F | 0.53377 (11) | 0.32123 (8) | 0.19202 (14) | 0.0427 (3) | |
O1 | 0.47612 (10) | 0.43326 (8) | 0.79555 (14) | 0.0242 (3) | |
O2 | 0.19830 (10) | 0.54133 (8) | 1.03615 (14) | 0.0264 (3) | |
O3 | 0.17889 (11) | 0.53806 (9) | 0.75830 (15) | 0.0329 (3) | |
O4 | 0.17181 (12) | 0.23235 (9) | 0.54858 (18) | 0.0393 (3) | |
C1 | 0.31410 (14) | 0.36896 (11) | 0.6411 (2) | 0.0222 (3) | |
C2 | 0.40529 (14) | 0.36553 (11) | 0.5455 (2) | 0.0222 (3) | |
C3 | 0.41420 (16) | 0.33514 (12) | 0.3875 (2) | 0.0264 (4) | |
H3 | 0.3516 | 0.3078 | 0.3155 | 0.032* | |
C4 | 0.52168 (16) | 0.34834 (12) | 0.3458 (2) | 0.0289 (4) | |
C5 | 0.61801 (16) | 0.38849 (12) | 0.4473 (2) | 0.0284 (4) | |
H5 | 0.6880 | 0.3950 | 0.4111 | 0.034* | |
C6 | 0.60937 (14) | 0.41885 (12) | 0.6032 (2) | 0.0257 (4) | |
H6 | 0.6722 | 0.4464 | 0.6744 | 0.031* | |
C7 | 0.50247 (14) | 0.40604 (11) | 0.6470 (2) | 0.0224 (3) | |
C8 | 0.36106 (14) | 0.40933 (11) | 0.7872 (2) | 0.0229 (4) | |
C9 | 0.31082 (15) | 0.43478 (12) | 0.9330 (2) | 0.0252 (4) | |
H9A | 0.3743 | 0.4524 | 1.0239 | 0.030* | |
H9B | 0.2725 | 0.3831 | 0.9689 | 0.030* | |
C10 | 0.22306 (14) | 0.51050 (12) | 0.8949 (2) | 0.0234 (4) | |
C11 | 0.11677 (16) | 0.61749 (12) | 1.0234 (2) | 0.0298 (4) | |
H11 | 0.0555 | 0.6121 | 0.9218 | 0.036* | |
C12 | 0.06204 (17) | 0.61224 (13) | 1.1728 (2) | 0.0340 (4) | |
H12A | 0.0191 | 0.5572 | 1.1699 | 0.051* | |
H12B | 0.0094 | 0.6618 | 1.1718 | 0.051* | |
H12C | 0.1226 | 0.6143 | 1.2721 | 0.051* | |
C13 | 0.1857 (2) | 0.70278 (14) | 1.0176 (3) | 0.0504 (6) | |
H13A | 0.2183 | 0.7028 | 0.9199 | 0.076* | |
H13B | 0.2482 | 0.7064 | 1.1146 | 0.076* | |
H13C | 0.1344 | 0.7533 | 1.0147 | 0.076* | |
C14 | 0.11297 (18) | 0.39058 (15) | 0.4135 (2) | 0.0397 (5) | |
H14A | 0.1529 | 0.3725 | 0.3282 | 0.060* | |
H14B | 0.1258 | 0.4532 | 0.4356 | 0.060* | |
H14C | 0.0302 | 0.3794 | 0.3773 | 0.060* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S | 0.0205 (2) | 0.0281 (2) | 0.0274 (2) | −0.00173 (17) | 0.00402 (16) | −0.00285 (18) |
F | 0.0481 (7) | 0.0526 (8) | 0.0320 (6) | −0.0002 (6) | 0.0189 (5) | −0.0125 (5) |
O1 | 0.0211 (6) | 0.0286 (6) | 0.0221 (6) | −0.0011 (5) | 0.0031 (5) | −0.0028 (5) |
O2 | 0.0283 (6) | 0.0295 (7) | 0.0213 (6) | 0.0066 (5) | 0.0046 (5) | −0.0010 (5) |
O3 | 0.0323 (7) | 0.0439 (8) | 0.0226 (6) | 0.0096 (6) | 0.0062 (5) | 0.0042 (6) |
O4 | 0.0339 (7) | 0.0291 (7) | 0.0529 (9) | −0.0065 (6) | 0.0048 (6) | −0.0116 (6) |
C1 | 0.0203 (8) | 0.0202 (8) | 0.0253 (8) | 0.0012 (6) | 0.0030 (6) | 0.0000 (7) |
C2 | 0.0222 (8) | 0.0196 (8) | 0.0241 (8) | 0.0022 (6) | 0.0033 (6) | 0.0002 (7) |
C3 | 0.0281 (9) | 0.0243 (9) | 0.0258 (8) | 0.0002 (7) | 0.0037 (7) | −0.0046 (7) |
C4 | 0.0359 (10) | 0.0275 (9) | 0.0254 (9) | 0.0052 (8) | 0.0113 (8) | −0.0022 (7) |
C5 | 0.0256 (9) | 0.0279 (9) | 0.0339 (9) | 0.0044 (7) | 0.0108 (7) | 0.0028 (8) |
C6 | 0.0200 (8) | 0.0263 (9) | 0.0298 (9) | 0.0015 (7) | 0.0029 (7) | 0.0005 (7) |
C7 | 0.0241 (8) | 0.0213 (8) | 0.0217 (8) | 0.0028 (7) | 0.0042 (6) | 0.0000 (6) |
C8 | 0.0198 (8) | 0.0233 (8) | 0.0251 (8) | 0.0009 (6) | 0.0037 (6) | 0.0026 (7) |
C9 | 0.0263 (9) | 0.0283 (9) | 0.0205 (8) | 0.0009 (7) | 0.0037 (7) | 0.0005 (7) |
C10 | 0.0215 (8) | 0.0274 (9) | 0.0214 (8) | −0.0046 (7) | 0.0052 (6) | −0.0015 (7) |
C11 | 0.0299 (9) | 0.0320 (10) | 0.0269 (9) | 0.0098 (8) | 0.0049 (7) | 0.0021 (8) |
C12 | 0.0301 (9) | 0.0382 (11) | 0.0359 (10) | 0.0079 (8) | 0.0119 (8) | 0.0019 (9) |
C13 | 0.0648 (15) | 0.0322 (11) | 0.0636 (15) | 0.0043 (10) | 0.0345 (13) | 0.0087 (11) |
C14 | 0.0302 (10) | 0.0517 (13) | 0.0329 (10) | 0.0040 (9) | −0.0030 (8) | 0.0067 (9) |
S—O4 | 1.4949 (14) | C6—C7 | 1.380 (2) |
S—C1 | 1.7595 (17) | C6—H6 | 0.9300 |
S—C14 | 1.7894 (19) | C8—C9 | 1.491 (2) |
F—C4 | 1.365 (2) | C9—C10 | 1.512 (2) |
O1—C8 | 1.3731 (19) | C9—H9A | 0.9700 |
O1—C7 | 1.384 (2) | C9—H9B | 0.9700 |
O2—C10 | 1.338 (2) | C11—C12 | 1.502 (2) |
O2—C11 | 1.472 (2) | C11—C13 | 1.513 (3) |
O3—C10 | 1.205 (2) | C11—H11 | 0.9800 |
C1—C8 | 1.353 (2) | C12—H12A | 0.9600 |
C1—C2 | 1.450 (2) | C12—H12B | 0.9600 |
C2—C7 | 1.394 (2) | C12—H12C | 0.9600 |
C2—C3 | 1.402 (2) | C13—H13A | 0.9600 |
C3—C4 | 1.380 (2) | C13—H13B | 0.9600 |
C3—H3 | 0.9300 | C13—H13C | 0.9600 |
C4—C5 | 1.384 (3) | C14—H14A | 0.9600 |
C5—C6 | 1.385 (3) | C14—H14B | 0.9600 |
C5—H5 | 0.9300 | C14—H14C | 0.9600 |
O4—S—C1 | 108.00 (8) | C10—C9—H9A | 109.0 |
O4—S—C14 | 106.75 (10) | C8—C9—H9B | 109.0 |
C1—S—C14 | 98.47 (9) | C10—C9—H9B | 109.0 |
C8—O1—C7 | 106.03 (12) | H9A—C9—H9B | 107.8 |
C10—O2—C11 | 117.35 (13) | O3—C10—O2 | 124.43 (16) |
C8—C1—C2 | 107.15 (14) | O3—C10—C9 | 125.76 (15) |
C8—C1—S | 121.23 (13) | O2—C10—C9 | 109.79 (14) |
C2—C1—S | 131.57 (13) | O2—C11—C12 | 106.27 (14) |
C7—C2—C3 | 119.14 (15) | O2—C11—C13 | 108.45 (16) |
C7—C2—C1 | 104.64 (14) | C12—C11—C13 | 112.95 (17) |
C3—C2—C1 | 136.21 (16) | O2—C11—H11 | 109.7 |
C4—C3—C2 | 115.75 (16) | C12—C11—H11 | 109.7 |
C4—C3—H3 | 122.1 | C13—C11—H11 | 109.7 |
C2—C3—H3 | 122.1 | C11—C12—H12A | 109.5 |
F—C4—C3 | 117.80 (16) | C11—C12—H12B | 109.5 |
F—C4—C5 | 117.32 (16) | H12A—C12—H12B | 109.5 |
C3—C4—C5 | 124.87 (16) | C11—C12—H12C | 109.5 |
C4—C5—C6 | 119.52 (16) | H12A—C12—H12C | 109.5 |
C4—C5—H5 | 120.2 | H12B—C12—H12C | 109.5 |
C6—C5—H5 | 120.2 | C11—C13—H13A | 109.5 |
C7—C6—C5 | 116.35 (16) | C11—C13—H13B | 109.5 |
C7—C6—H6 | 121.8 | H13A—C13—H13B | 109.5 |
C5—C6—H6 | 121.8 | C11—C13—H13C | 109.5 |
C6—C7—O1 | 124.87 (15) | H13A—C13—H13C | 109.5 |
C6—C7—C2 | 124.37 (16) | H13B—C13—H13C | 109.5 |
O1—C7—C2 | 110.75 (14) | S—C14—H14A | 109.5 |
C1—C8—O1 | 111.43 (14) | S—C14—H14B | 109.5 |
C1—C8—C9 | 132.54 (16) | H14A—C14—H14B | 109.5 |
O1—C8—C9 | 115.98 (14) | S—C14—H14C | 109.5 |
C8—C9—C10 | 112.79 (14) | H14A—C14—H14C | 109.5 |
C8—C9—H9A | 109.0 | H14B—C14—H14C | 109.5 |
O4—S—C1—C8 | −126.67 (15) | C3—C2—C7—C6 | 0.0 (3) |
C14—S—C1—C8 | 122.54 (15) | C1—C2—C7—C6 | −178.66 (16) |
O4—S—C1—C2 | 50.55 (18) | C3—C2—C7—O1 | 178.64 (14) |
C14—S—C1—C2 | −60.23 (18) | C1—C2—C7—O1 | 0.01 (18) |
C8—C1—C2—C7 | −0.17 (18) | C2—C1—C8—O1 | 0.27 (19) |
S—C1—C2—C7 | −177.69 (14) | S—C1—C8—O1 | 178.10 (11) |
C8—C1—C2—C3 | −178.44 (19) | C2—C1—C8—C9 | 177.57 (17) |
S—C1—C2—C3 | 4.0 (3) | S—C1—C8—C9 | −4.6 (3) |
C7—C2—C3—C4 | 0.1 (2) | C7—O1—C8—C1 | −0.26 (18) |
C1—C2—C3—C4 | 178.20 (18) | C7—O1—C8—C9 | −178.05 (14) |
C2—C3—C4—F | −178.87 (15) | C1—C8—C9—C10 | −69.4 (2) |
C2—C3—C4—C5 | 0.0 (3) | O1—C8—C9—C10 | 107.82 (16) |
F—C4—C5—C6 | 178.67 (16) | C11—O2—C10—O3 | −3.7 (2) |
C3—C4—C5—C6 | −0.2 (3) | C11—O2—C10—C9 | 178.11 (14) |
C4—C5—C6—C7 | 0.3 (3) | C8—C9—C10—O3 | 13.5 (2) |
C5—C6—C7—O1 | −178.66 (15) | C8—C9—C10—O2 | −168.35 (14) |
C5—C6—C7—C2 | −0.2 (3) | C10—O2—C11—C12 | 154.84 (15) |
C8—O1—C7—C6 | 178.81 (16) | C10—O2—C11—C13 | −83.45 (19) |
C8—O1—C7—C2 | 0.15 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O3i | 0.93 | 2.50 | 3.370 (2) | 155 |
C6—H6···O2ii | 0.93 | 2.54 | 3.369 (2) | 149 |
C9—H9B···O4iii | 0.97 | 2.26 | 3.228 (2) | 176 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+1, −z+2; (iii) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C14H15FO4S |
Mr | 298.32 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 11.6332 (6), 14.9522 (7), 8.2333 (4) |
β (°) | 102.277 (1) |
V (Å3) | 1399.36 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.25 × 0.20 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2000) |
Tmin, Tmax | 0.940, 0.961 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12229, 3173, 2476 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.098, 1.09 |
No. of reflections | 3173 |
No. of parameters | 182 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.39, −0.39 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 1998), SHELXL97 (Bruker, 2001).
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O3i | 0.93 | 2.50 | 3.370 (2) | 155.3 |
C6—H6···O2ii | 0.93 | 2.54 | 3.369 (2) | 148.6 |
C9—H9B···O4iii | 0.97 | 2.26 | 3.228 (2) | 176.2 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+1, −z+2; (iii) x, −y+1/2, z+1/2. |
References
Brandenburg, K. (1998). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2001). SAINT and SMART. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
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Molecules involving benzofuran skeleton have attracted particular interest in view of their biological and pharmacological properties (Howlett et al., 1999; Twyman & Allsop, 1999). As a part of our ongoing studies of the effect of side chain substituents on the solid state structures of alkyl 2-(5-fluoro-3-methylsulfinyl-1-benzofuran-2-yl) acetate analogues (Choi et al., 2009a,b), we report the crystal structure of the title compound (Fig. 1).
The benzofuran unit is essentially planar, with a mean deviation of 0.008 (1) Å from the least-squares plane defined by the nine constituent atoms. The crystal packing (Fig. 2) is stabilized by three intermolecular non-classical C—H···O hydrogen bonds; the first between an H atom of the benzofuran ring and the oxygen of the C═O unit, with a C5–H5···O3i, the second between an H atom of the benzofuran ring and the oxygen of the isopropoxy group, with a C6—H6···O2ii, the third between a methylene H atom and the oxygen of the S═O unit, with a C9—H9B···O4iii, respectively (Table 1). The crystal packing (Fig. 2) is further stabilized by aromatic π···π interactions between the benzene rings of neighboring molecules, with a Cg···Cgi distance of 3.688 (2) Å (Cg is the centroid of the C2–C7 benzene ring).