organic compounds
(E)-N′-(3,4-Dimethoxybenzylidene)-2,4-dihydroxybenzohydrazide methanol solvate
aCollege of Animal Science and Veterinary Medicine, Jilin University, Changchun 130062, People's Republic of China
*Correspondence e-mail: liusongcai09@163.com,
The title compound, C16H16N2O5·CH3OH, was obtained from a condensation reaction of 3,4-dimethoxybenzaldehyde and 2,4-dihydroxybenzohydrazide. The non-H atoms of the Schiff base molecule are approximately coplanar (r.m.s. deviation = 0.043 Å) and the dihedral angle between the two benzene rings is 1.6 (1)°. The molecule adopts an E configuration with respect to the C=N double bond. An intramolecular O—H⋯O hydrogen bond is observed. The Schiff base and methanol molecules are linked into a two-dimensional network parallel to (10) by intermolecular N—H⋯O, O—H⋯N and O—H⋯O hydrogen bonds.
Related literature
For background to Schiff base compounds, hydrazone compounds and their biological properties, see: Kucukguzel et al. (2006); Khattab et al. (2005); Karthikeyan et al. (2006); Okabe et al. (1993). For bond-length data, see: Allen et al. (1987). For related structures, see: Shan et al. (2008); Fun et al. (2008); Ma et al. (2008); Diao et al. (2008a,b); Ejsmont et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809035752/ci2900sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809035752/ci2900Isup2.hkl
3,4-Dimethoxybenzaldehyde (1.0 mmol, 166.2 mg) was dissolved in methanol (50 ml), then 2,4-dihydroxybenzohydrazide (1.0 mmol, 168.2 mg) was added slowly into the solution, and the mixture was kept at reflux with continuous stirring for 1 h. After the solution had cooled to room temperature colourless crystallites appeared. The crystallites were filtered and washed with methanol for three times. Recrystallization from an absolute methanol yielded block-shaped single crystals of the title compound.
Atom H1A was located from a difference Fourier map and refined isotropically, with the N-H distance restrained to 0.90 (1) Å. Other H atoms were placed in calculated positions with C-H = 0.93-0.96 Å and O-H = 0.82 Å, and refined in riding mode with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O and Cmethyl). A rotating group model was used for methyl and hydroxyl groups.
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C16H16N2O5·CH4O | F(000) = 736 |
Mr = 348.35 | Dx = 1.343 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1327 reflections |
a = 8.497 (1) Å | θ = 2.3–24.5° |
b = 17.431 (2) Å | µ = 0.10 mm−1 |
c = 11.933 (2) Å | T = 298 K |
β = 102.93 (2)° | Block, colourless |
V = 1722.6 (4) Å3 | 0.25 × 0.23 × 0.23 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 3732 independent reflections |
Radiation source: fine-focus sealed tube | 2017 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
ω scans | θmax = 27.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −10→10 |
Tmin = 0.975, Tmax = 0.977 | k = −20→22 |
10465 measured reflections | l = −15→7 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.129 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0522P)2 + 0.0211P] where P = (Fo2 + 2Fc2)/3 |
3732 reflections | (Δ/σ)max = 0.001 |
235 parameters | Δρmax = 0.15 e Å−3 |
1 restraint | Δρmin = −0.19 e Å−3 |
C16H16N2O5·CH4O | V = 1722.6 (4) Å3 |
Mr = 348.35 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.497 (1) Å | µ = 0.10 mm−1 |
b = 17.431 (2) Å | T = 298 K |
c = 11.933 (2) Å | 0.25 × 0.23 × 0.23 mm |
β = 102.93 (2)° |
Bruker SMART CCD area-detector diffractometer | 3732 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 2017 reflections with I > 2σ(I) |
Tmin = 0.975, Tmax = 0.977 | Rint = 0.043 |
10465 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 1 restraint |
wR(F2) = 0.129 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.15 e Å−3 |
3732 reflections | Δρmin = −0.19 e Å−3 |
235 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.9655 (2) | 0.08862 (10) | 0.61461 (15) | 0.0408 (4) | |
N2 | 0.8536 (2) | 0.03538 (10) | 0.56016 (14) | 0.0414 (4) | |
O1 | 1.2219 (2) | 0.05972 (9) | 0.95309 (12) | 0.0623 (5) | |
H1 | 1.1561 | 0.0316 | 0.9118 | 0.093* | |
O2 | 1.52034 (18) | 0.28449 (9) | 0.94432 (11) | 0.0499 (4) | |
H2 | 1.5442 | 0.3149 | 0.8984 | 0.075* | |
O3 | 1.01873 (19) | 0.01674 (9) | 0.77490 (12) | 0.0544 (4) | |
O4 | 0.42243 (18) | −0.17176 (9) | 0.40757 (13) | 0.0562 (4) | |
O5 | 0.29676 (18) | −0.13286 (8) | 0.19882 (13) | 0.0582 (5) | |
O6 | 0.6296 (2) | 0.37824 (9) | 0.81028 (13) | 0.0639 (5) | |
H6 | 0.5949 | 0.4222 | 0.8007 | 0.096* | |
C1 | 1.1618 (2) | 0.13446 (11) | 0.77945 (16) | 0.0379 (5) | |
C2 | 1.2479 (3) | 0.12222 (12) | 0.89285 (17) | 0.0419 (5) | |
C3 | 1.3640 (3) | 0.17364 (13) | 0.94638 (17) | 0.0445 (5) | |
H3 | 1.4178 | 0.1655 | 1.0223 | 0.053* | |
C4 | 1.4008 (2) | 0.23680 (12) | 0.88820 (17) | 0.0393 (5) | |
C5 | 1.3173 (3) | 0.25089 (12) | 0.77654 (17) | 0.0461 (6) | |
H5 | 1.3401 | 0.2942 | 0.7375 | 0.055* | |
C6 | 1.2005 (2) | 0.20011 (12) | 0.72414 (17) | 0.0442 (6) | |
H6A | 1.1450 | 0.2098 | 0.6490 | 0.053* | |
C7 | 1.0444 (2) | 0.07663 (12) | 0.72359 (17) | 0.0401 (5) | |
C8 | 0.7848 (2) | 0.05124 (12) | 0.45725 (18) | 0.0412 (5) | |
H8 | 0.8152 | 0.0956 | 0.4242 | 0.049* | |
C9 | 0.6598 (2) | 0.00287 (11) | 0.38858 (17) | 0.0373 (5) | |
C10 | 0.6063 (2) | −0.06345 (11) | 0.43485 (17) | 0.0408 (5) | |
H10 | 0.6532 | −0.0781 | 0.5098 | 0.049* | |
C11 | 0.4845 (2) | −0.10693 (11) | 0.36970 (18) | 0.0414 (5) | |
C12 | 0.4150 (2) | −0.08531 (12) | 0.25628 (18) | 0.0434 (5) | |
C13 | 0.4679 (3) | −0.02028 (12) | 0.21043 (18) | 0.0479 (6) | |
H13 | 0.4218 | −0.0057 | 0.1353 | 0.057* | |
C14 | 0.5908 (3) | 0.02357 (12) | 0.27733 (17) | 0.0443 (5) | |
H14 | 0.6267 | 0.0674 | 0.2463 | 0.053* | |
C15 | 0.4975 (3) | −0.19856 (14) | 0.5184 (2) | 0.0648 (7) | |
H15A | 0.6088 | −0.2100 | 0.5209 | 0.097* | |
H15B | 0.4437 | −0.2441 | 0.5353 | 0.097* | |
H15C | 0.4912 | −0.1597 | 0.5743 | 0.097* | |
C16 | 0.2220 (3) | −0.11211 (15) | 0.0836 (2) | 0.0661 (7) | |
H16A | 0.1795 | −0.0610 | 0.0826 | 0.099* | |
H16B | 0.1358 | −0.1473 | 0.0539 | 0.099* | |
H16C | 0.3004 | −0.1141 | 0.0369 | 0.099* | |
C17 | 0.6766 (4) | 0.35311 (16) | 0.7103 (2) | 0.0814 (9) | |
H17A | 0.7812 | 0.3736 | 0.7093 | 0.122* | |
H17B | 0.5995 | 0.3705 | 0.6436 | 0.122* | |
H17C | 0.6812 | 0.2981 | 0.7099 | 0.122* | |
H1A | 0.979 (2) | 0.1297 (8) | 0.5719 (15) | 0.050* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0420 (10) | 0.0382 (11) | 0.0393 (11) | −0.0067 (9) | 0.0028 (8) | −0.0003 (8) |
N2 | 0.0418 (10) | 0.0372 (11) | 0.0433 (11) | −0.0048 (8) | 0.0056 (8) | −0.0044 (8) |
O1 | 0.0787 (13) | 0.0582 (11) | 0.0429 (10) | −0.0152 (9) | −0.0014 (8) | 0.0154 (8) |
O2 | 0.0562 (10) | 0.0511 (10) | 0.0370 (9) | −0.0089 (8) | −0.0011 (7) | −0.0071 (7) |
O3 | 0.0647 (11) | 0.0474 (10) | 0.0475 (10) | −0.0106 (8) | 0.0049 (8) | 0.0089 (7) |
O4 | 0.0589 (10) | 0.0405 (9) | 0.0654 (11) | −0.0096 (8) | 0.0057 (8) | 0.0064 (8) |
O5 | 0.0585 (10) | 0.0475 (10) | 0.0598 (11) | −0.0110 (8) | −0.0056 (8) | −0.0038 (8) |
O6 | 0.0943 (14) | 0.0413 (10) | 0.0577 (11) | −0.0014 (10) | 0.0201 (9) | −0.0022 (8) |
C1 | 0.0427 (12) | 0.0373 (12) | 0.0311 (12) | 0.0030 (10) | 0.0031 (9) | 0.0000 (9) |
C2 | 0.0522 (13) | 0.0417 (13) | 0.0321 (12) | 0.0043 (11) | 0.0099 (10) | 0.0038 (10) |
C3 | 0.0528 (13) | 0.0486 (14) | 0.0286 (12) | 0.0043 (11) | 0.0012 (10) | −0.0003 (10) |
C4 | 0.0408 (12) | 0.0401 (13) | 0.0340 (12) | 0.0023 (10) | 0.0023 (9) | −0.0099 (10) |
C5 | 0.0559 (14) | 0.0419 (14) | 0.0354 (13) | −0.0025 (11) | −0.0005 (10) | 0.0033 (10) |
C6 | 0.0521 (13) | 0.0445 (14) | 0.0297 (12) | −0.0002 (11) | −0.0043 (10) | 0.0016 (10) |
C7 | 0.0419 (12) | 0.0399 (13) | 0.0367 (13) | 0.0026 (10) | 0.0048 (10) | 0.0000 (10) |
C8 | 0.0415 (12) | 0.0352 (12) | 0.0453 (14) | −0.0023 (10) | 0.0063 (10) | −0.0015 (10) |
C9 | 0.0368 (12) | 0.0316 (12) | 0.0419 (13) | −0.0005 (9) | 0.0053 (9) | −0.0040 (9) |
C10 | 0.0418 (12) | 0.0368 (13) | 0.0416 (13) | 0.0029 (10) | 0.0047 (10) | −0.0026 (10) |
C11 | 0.0424 (12) | 0.0294 (12) | 0.0530 (14) | 0.0006 (10) | 0.0116 (10) | −0.0015 (10) |
C12 | 0.0414 (12) | 0.0339 (12) | 0.0513 (15) | −0.0027 (10) | 0.0026 (10) | −0.0103 (10) |
C13 | 0.0506 (14) | 0.0445 (14) | 0.0446 (14) | −0.0028 (11) | 0.0022 (11) | −0.0019 (11) |
C14 | 0.0482 (13) | 0.0377 (13) | 0.0449 (14) | −0.0052 (10) | 0.0059 (10) | 0.0011 (10) |
C15 | 0.0699 (17) | 0.0456 (15) | 0.0781 (19) | −0.0015 (13) | 0.0147 (14) | 0.0184 (13) |
C16 | 0.0569 (15) | 0.0674 (18) | 0.0628 (18) | −0.0137 (14) | −0.0104 (12) | −0.0078 (13) |
C17 | 0.114 (3) | 0.072 (2) | 0.0633 (19) | −0.0190 (18) | 0.0304 (17) | −0.0166 (15) |
N1—C7 | 1.339 (3) | C5—H5 | 0.93 |
N1—N2 | 1.382 (2) | C6—H6A | 0.93 |
N1—H1A | 0.901 (9) | C8—C9 | 1.456 (3) |
N2—C8 | 1.267 (2) | C8—H8 | 0.93 |
O1—C2 | 1.350 (2) | C9—C14 | 1.374 (3) |
O1—H1 | 0.82 | C9—C10 | 1.400 (3) |
O2—C4 | 1.367 (2) | C10—C11 | 1.375 (3) |
O2—H2 | 0.82 | C10—H10 | 0.93 |
O3—C7 | 1.254 (2) | C11—C12 | 1.402 (3) |
O4—C11 | 1.366 (2) | C12—C13 | 1.377 (3) |
O4—C15 | 1.413 (3) | C13—C14 | 1.393 (3) |
O5—C12 | 1.363 (2) | C13—H13 | 0.93 |
O5—C16 | 1.426 (3) | C14—H14 | 0.93 |
O6—C17 | 1.410 (3) | C15—H15A | 0.96 |
O6—H6 | 0.82 | C15—H15B | 0.96 |
C1—C6 | 1.397 (3) | C15—H15C | 0.96 |
C1—C2 | 1.403 (3) | C16—H16A | 0.96 |
C1—C7 | 1.469 (3) | C16—H16B | 0.96 |
C2—C3 | 1.380 (3) | C16—H16C | 0.96 |
C3—C4 | 1.374 (3) | C17—H17A | 0.96 |
C3—H3 | 0.93 | C17—H17B | 0.96 |
C4—C5 | 1.384 (3) | C17—H17C | 0.96 |
C5—C6 | 1.372 (3) | ||
C7—N1—N2 | 119.58 (17) | C10—C9—C8 | 121.09 (19) |
C7—N1—H1A | 125.0 (14) | C11—C10—C9 | 120.1 (2) |
N2—N1—H1A | 115.4 (13) | C11—C10—H10 | 119.9 |
C8—N2—N1 | 115.41 (17) | C9—C10—H10 | 119.9 |
C2—O1—H1 | 109.5 | O4—C11—C10 | 124.5 (2) |
C4—O2—H2 | 109.5 | O4—C11—C12 | 115.55 (18) |
C11—O4—C15 | 117.13 (17) | C10—C11—C12 | 119.9 (2) |
C12—O5—C16 | 116.74 (18) | O5—C12—C13 | 124.7 (2) |
C17—O6—H6 | 109.5 | O5—C12—C11 | 115.22 (19) |
C6—C1—C2 | 116.94 (18) | C13—C12—C11 | 120.03 (19) |
C6—C1—C7 | 123.76 (18) | C12—C13—C14 | 119.6 (2) |
C2—C1—C7 | 119.21 (18) | C12—C13—H13 | 120.2 |
O1—C2—C3 | 117.58 (19) | C14—C13—H13 | 120.2 |
O1—C2—C1 | 121.59 (19) | C9—C14—C13 | 120.9 (2) |
C3—C2—C1 | 120.83 (19) | C9—C14—H14 | 119.6 |
C4—C3—C2 | 120.42 (19) | C13—C14—H14 | 119.6 |
C4—C3—H3 | 119.8 | O4—C15—H15A | 109.5 |
C2—C3—H3 | 119.8 | O4—C15—H15B | 109.5 |
O2—C4—C3 | 117.89 (18) | H15A—C15—H15B | 109.5 |
O2—C4—C5 | 121.9 (2) | O4—C15—H15C | 109.5 |
C3—C4—C5 | 120.2 (2) | H15A—C15—H15C | 109.5 |
C6—C5—C4 | 119.1 (2) | H15B—C15—H15C | 109.5 |
C6—C5—H5 | 120.4 | O5—C16—H16A | 109.5 |
C4—C5—H5 | 120.4 | O5—C16—H16B | 109.5 |
C5—C6—C1 | 122.43 (19) | H16A—C16—H16B | 109.5 |
C5—C6—H6A | 118.8 | O5—C16—H16C | 109.5 |
C1—C6—H6A | 118.8 | H16A—C16—H16C | 109.5 |
O3—C7—N1 | 120.01 (19) | H16B—C16—H16C | 109.5 |
O3—C7—C1 | 121.63 (19) | O6—C17—H17A | 109.5 |
N1—C7—C1 | 118.35 (19) | O6—C17—H17B | 109.5 |
N2—C8—C9 | 122.7 (2) | H17A—C17—H17B | 109.5 |
N2—C8—H8 | 118.7 | O6—C17—H17C | 109.5 |
C9—C8—H8 | 118.7 | H17A—C17—H17C | 109.5 |
C14—C9—C10 | 119.45 (18) | H17B—C17—H17C | 109.5 |
C14—C9—C8 | 119.44 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2i | 0.90 (1) | 2.22 (1) | 3.108 (2) | 170 (2) |
O6—H6···N2ii | 0.82 | 2.55 | 3.133 (2) | 129 |
O6—H6···O3ii | 0.82 | 2.02 | 2.807 (2) | 161 |
O2—H2···O6iii | 0.82 | 1.79 | 2.599 (2) | 171 |
O1—H1···O3 | 0.82 | 1.80 | 2.534 (2) | 148 |
Symmetry codes: (i) x−1/2, −y+1/2, z−1/2; (ii) −x+3/2, y+1/2, −z+3/2; (iii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C16H16N2O5·CH4O |
Mr | 348.35 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 8.497 (1), 17.431 (2), 11.933 (2) |
β (°) | 102.93 (2) |
V (Å3) | 1722.6 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.25 × 0.23 × 0.23 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.975, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10465, 3732, 2017 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.129, 1.03 |
No. of reflections | 3732 |
No. of parameters | 235 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.15, −0.19 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O2i | 0.90 (1) | 2.217 (10) | 3.108 (2) | 170 (2) |
O6—H6···N2ii | 0.82 | 2.55 | 3.133 (2) | 129 |
O6—H6···O3ii | 0.82 | 2.02 | 2.807 (2) | 161 |
O2—H2···O6iii | 0.82 | 1.79 | 2.599 (2) | 171 |
O1—H1···O3 | 0.82 | 1.80 | 2.534 (2) | 148 |
Symmetry codes: (i) x−1/2, −y+1/2, z−1/2; (ii) −x+3/2, y+1/2, −z+3/2; (iii) x+1, y, z. |
References
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Hydrazones and Schiff bases have been attracted much attention for their excellent biological properties, especially for their potential pharmacological and antitumor properties (Kucukguzel et al., 2006; Khattab et al., 2005; Karthikeyan et al., 2006; Okabe et al., 1993). Recently, a large number of hydrazone derivatives have been prepared and structurally characterized (Shan et al., 2008; Fun et al., 2008; Ma et al., 2008; Diao et al., 2008a,b; Ejsmont et al., 2008). As part of the ongoing study, we report herein the crystal structure of the title compound.
The molecular structure of the title compound is shown in Fig. 1. The compound consists of a Schiff base molecule and a methanol molecule. The dihedral angle between the two benzene rings is 1.6 (1)°. The Schiff base molecule displays an E configuration about the C═N bond. The bond lengths are typical (Allen et al., 1987). The molecules are linked into a two-dimensional network parallel to the (101) by intermolecular N—H···O, O—H···N, and O—H···O hydrogen bonds (Fig. 2 and Table 1).