organic compounds
Diethyl 2,6-dimethylpyridine-3,5-dicarboxylate at 100 K
aLaboratoire des Produits Naturels d'Origine Végétale et de Synthèse Organique, PHYSYNOR, Université Mentouri-Constantine, 25000 Constantine, Algeria, bFaculté de Chimie, USTHB, BP32, El-Alia, Bab-Ezzouar, Alger, Algeria, and cUnité de Recherche de Chimie de l'Environnement et Moléculaire Structurale, CHEMS, Université Mentouri-Constantine, 25000 Algeria.
*Correspondence e-mail: belhouas.ratiba@yahoo.fr
In the structure of the title compound, C13H17NO4, the packing is stabilized by weak C—H⋯O and C—H⋯π interactions, resulting in the formation of a three-dimensional network.
Related literature
For our studies on nitrogen heterocycles, see: Debache et al. (2008a,b); Boulcina et al. (2007).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2003); cell SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg & Berndt, 2001); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536809037349/hb5104sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809037349/hb5104Isup2.hkl
A 25-ml round-bottomed flask was charged with ethyl acetoacetate (2.0 mmol), 2-chloroquinoline-3-carboxaldehyde (1.0 mmol) and ammonium acetate (1.0 mmol), followed by 5 ml of water. The mixture was then refluxed until the reaction was completed (monitored by TLC). The reaction mixture was treated with brine solution, then extracted with ethyl acetate. After evaporation of the solvent, the crude yellow product was recrystallized from ethanol to give DHP in 85% yields. A solution of FeCl3.6H2O (0.1 mmol) in H2O (5 ml) was added to the obtained 1,4-dihydropyridines (1 mmol). The reaction mixture was stirred under refluxing until no starting material is detected. After the reaction was completed, the mixture was cooled to room temperature, quenched with 20 ml of H2O, neutralized with saturated aqueous solution of NaHCO3, and then extracted with ethyl acetate. The combined organic layer was dried over anhydrous sodium sulfate, and concentrated under a reduced pressure. Colourless blocks of (I) were obtained by a slow recrystallization from toluene.
In the final stages of
all H atoms were localized in Fourier maps but introduced in calculated positions, with C—H distances of 0.96 and 0.97 for methylene and methyl H atoms, respectively, and refined using a riding model with Uiso(H) values of 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for methylene H atoms. Except for H3 atom were located in a difference Fourier map and refined isotropically. All non-H atoms were refined with anisotropic atomic displacement parameters.Data collection: APEX2 (Bruker,2003); cell
SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg & Berndt, 2001); software used to prepare material for publication: WinGX (Farrugia, 1999).C13H17NO4 | F(000) = 536 |
Mr = 251.28 | Dx = 1.272 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4103 reflections |
a = 4.5380 (6) Å | θ = 2.5–27.4° |
b = 15.440 (2) Å | µ = 0.09 mm−1 |
c = 18.722 (2) Å | T = 100 K |
β = 90.502 (6)° | Block, white |
V = 1311.7 (3) Å3 | 0.58 × 0.34 × 0.25 mm |
Z = 4 |
Bruker APEXII diffractometer | 2977 independent reflections |
Radiation source: fine-focus sealed tube | 2442 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.038 |
Detector resolution: 10.0 pixels mm-1 | θmax = 27.6°, θmin = 2.5° |
CCD rotation images, thin slices scans | h = −4→5 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2002) | k = −19→19 |
Tmin = 0.942, Tmax = 0.977 | l = −24→24 |
9968 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0665P)2 + 0.4357P] where P = (Fo2 + 2Fc2)/3 |
2977 reflections | (Δ/σ)max < 0.001 |
170 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C13H17NO4 | V = 1311.7 (3) Å3 |
Mr = 251.28 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 4.5380 (6) Å | µ = 0.09 mm−1 |
b = 15.440 (2) Å | T = 100 K |
c = 18.722 (2) Å | 0.58 × 0.34 × 0.25 mm |
β = 90.502 (6)° |
Bruker APEXII diffractometer | 2977 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2002) | 2442 reflections with I > 2σ(I) |
Tmin = 0.942, Tmax = 0.977 | Rint = 0.038 |
9968 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.35 e Å−3 |
2977 reflections | Δρmin = −0.23 e Å−3 |
170 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.4395 (3) | 0.39005 (9) | 0.40522 (8) | 0.0176 (3) | |
C2 | 0.5062 (3) | 0.39184 (8) | 0.33193 (7) | 0.0167 (3) | |
C3 | 0.7120 (3) | 0.33252 (8) | 0.30658 (8) | 0.0161 (3) | |
H3 | 0.761 (5) | 0.3320 (13) | 0.2570 (12) | 0.05* | |
C4 | 0.8450 (3) | 0.27347 (8) | 0.35269 (7) | 0.0163 (3) | |
C5 | 0.7627 (3) | 0.27417 (9) | 0.42501 (7) | 0.0179 (3) | |
C6 | 0.2267 (3) | 0.45056 (9) | 0.44050 (8) | 0.0224 (3) | |
H6A | 0.1927 | 0.4317 | 0.4886 | 0.034* | |
H6B | 0.0437 | 0.4506 | 0.4144 | 0.034* | |
H6C | 0.3074 | 0.508 | 0.4411 | 0.034* | |
C7 | 0.8829 (4) | 0.21296 (10) | 0.48038 (8) | 0.0248 (3) | |
H7A | 0.7855 | 0.2228 | 0.525 | 0.037* | |
H7B | 1.0907 | 0.2226 | 0.4864 | 0.037* | |
H7C | 0.8495 | 0.1544 | 0.4652 | 0.037* | |
C8 | 1.0669 (3) | 0.21071 (8) | 0.32422 (7) | 0.0166 (3) | |
C9 | 1.3018 (3) | 0.16026 (9) | 0.21932 (8) | 0.0206 (3) | |
H9A | 1.2478 | 0.1005 | 0.2286 | 0.025* | |
H9B | 1.4994 | 0.17 | 0.2378 | 0.025* | |
C10 | 1.2891 (4) | 0.17865 (12) | 0.14082 (9) | 0.0396 (5) | |
H10A | 1.0932 | 0.1679 | 0.1231 | 0.059* | |
H10B | 1.4255 | 0.1417 | 0.1165 | 0.059* | |
H10C | 1.3403 | 0.2381 | 0.1325 | 0.059* | |
C11 | 0.3604 (3) | 0.45328 (9) | 0.28148 (8) | 0.0185 (3) | |
C12 | 0.2762 (4) | 0.49029 (10) | 0.16025 (8) | 0.0268 (4) | |
H12A | 0.3523 | 0.5488 | 0.1643 | 0.032* | |
H12B | 0.0648 | 0.4918 | 0.1674 | 0.032* | |
C13 | 0.3448 (6) | 0.45354 (13) | 0.08850 (10) | 0.0491 (6) | |
H13A | 0.5544 | 0.4527 | 0.082 | 0.074* | |
H13B | 0.2549 | 0.4887 | 0.0521 | 0.074* | |
H13C | 0.2692 | 0.3956 | 0.0853 | 0.074* | |
N1 | 0.5655 (3) | 0.33183 (7) | 0.44964 (6) | 0.0189 (3) | |
O1 | 1.2043 (2) | 0.15896 (6) | 0.35969 (6) | 0.0236 (3) | |
O2 | 1.0940 (2) | 0.21896 (6) | 0.25334 (5) | 0.0201 (2) | |
O3 | 0.2067 (2) | 0.51374 (7) | 0.29916 (6) | 0.0286 (3) | |
O4 | 0.4163 (2) | 0.43422 (6) | 0.21325 (5) | 0.0238 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0130 (6) | 0.0164 (7) | 0.0233 (7) | −0.0039 (5) | 0.0008 (5) | −0.0038 (5) |
C2 | 0.0142 (6) | 0.0138 (6) | 0.0219 (7) | −0.0025 (5) | 0.0003 (5) | −0.0023 (5) |
C3 | 0.0144 (6) | 0.0148 (6) | 0.0190 (7) | −0.0036 (5) | 0.0008 (5) | −0.0025 (5) |
C4 | 0.0136 (6) | 0.0144 (6) | 0.0208 (7) | −0.0039 (5) | 0.0004 (5) | −0.0019 (5) |
C5 | 0.0162 (7) | 0.0161 (6) | 0.0213 (7) | −0.0045 (5) | −0.0002 (5) | −0.0007 (5) |
C6 | 0.0198 (7) | 0.0206 (7) | 0.0269 (8) | 0.0005 (6) | 0.0046 (6) | −0.0056 (6) |
C7 | 0.0285 (8) | 0.0245 (7) | 0.0215 (8) | 0.0017 (6) | 0.0030 (6) | 0.0034 (6) |
C8 | 0.0152 (7) | 0.0129 (6) | 0.0218 (7) | −0.0030 (5) | −0.0001 (5) | −0.0018 (5) |
C9 | 0.0178 (7) | 0.0164 (6) | 0.0276 (8) | 0.0033 (5) | 0.0031 (6) | −0.0047 (5) |
C10 | 0.0495 (11) | 0.0414 (10) | 0.0280 (9) | 0.0200 (9) | 0.0102 (8) | −0.0003 (7) |
C11 | 0.0143 (6) | 0.0149 (6) | 0.0264 (8) | −0.0032 (5) | 0.0008 (5) | −0.0020 (5) |
C12 | 0.0327 (9) | 0.0193 (7) | 0.0281 (8) | 0.0036 (6) | −0.0081 (6) | 0.0023 (6) |
C13 | 0.0827 (16) | 0.0362 (10) | 0.0283 (10) | 0.0183 (10) | −0.0110 (10) | 0.0008 (8) |
N1 | 0.0156 (6) | 0.0184 (6) | 0.0227 (6) | −0.0039 (5) | 0.0021 (5) | −0.0022 (5) |
O1 | 0.0253 (6) | 0.0200 (5) | 0.0255 (6) | 0.0054 (4) | −0.0004 (4) | 0.0016 (4) |
O2 | 0.0209 (5) | 0.0190 (5) | 0.0205 (5) | 0.0047 (4) | 0.0036 (4) | −0.0014 (4) |
O3 | 0.0287 (6) | 0.0220 (5) | 0.0351 (6) | 0.0089 (5) | 0.0045 (5) | −0.0002 (5) |
O4 | 0.0301 (6) | 0.0188 (5) | 0.0225 (6) | 0.0076 (4) | −0.0033 (4) | 0.0004 (4) |
C1—N1 | 1.3483 (19) | C8—O2 | 1.3397 (17) |
C1—C2 | 1.408 (2) | C9—O2 | 1.4584 (16) |
C1—C6 | 1.5011 (19) | C9—C10 | 1.497 (2) |
C2—C3 | 1.3945 (19) | C9—H9A | 0.97 |
C2—C11 | 1.489 (2) | C9—H9B | 0.97 |
C3—C4 | 1.3899 (19) | C10—H10A | 0.96 |
C3—H3 | 0.96 (2) | C10—H10B | 0.96 |
C4—C5 | 1.4079 (19) | C10—H10C | 0.96 |
C4—C8 | 1.4986 (19) | C11—O3 | 1.2132 (17) |
C5—N1 | 1.3466 (18) | C11—O4 | 1.3374 (18) |
C5—C7 | 1.502 (2) | C12—O4 | 1.4586 (18) |
C6—H6A | 0.96 | C12—C13 | 1.493 (2) |
C6—H6B | 0.96 | C12—H12A | 0.97 |
C6—H6C | 0.96 | C12—H12B | 0.97 |
C7—H7A | 0.96 | C13—H13A | 0.96 |
C7—H7B | 0.96 | C13—H13B | 0.96 |
C7—H7C | 0.96 | C13—H13C | 0.96 |
C8—O1 | 1.2089 (17) | ||
N1—C1—C2 | 121.38 (12) | O2—C9—C10 | 106.94 (12) |
N1—C1—C6 | 114.49 (12) | O2—C9—H9A | 110.3 |
C2—C1—C6 | 124.13 (13) | C10—C9—H9A | 110.3 |
C3—C2—C1 | 117.97 (13) | O2—C9—H9B | 110.3 |
C3—C2—C11 | 119.84 (12) | C10—C9—H9B | 110.3 |
C1—C2—C11 | 122.18 (12) | H9A—C9—H9B | 108.6 |
C4—C3—C2 | 120.54 (13) | C9—C10—H10A | 109.5 |
C4—C3—H3 | 119.5 (13) | C9—C10—H10B | 109.5 |
C2—C3—H3 | 119.9 (13) | H10A—C10—H10B | 109.5 |
C3—C4—C5 | 118.34 (12) | C9—C10—H10C | 109.5 |
C3—C4—C8 | 119.52 (12) | H10A—C10—H10C | 109.5 |
C5—C4—C8 | 122.13 (12) | H10B—C10—H10C | 109.5 |
N1—C5—C4 | 121.15 (13) | O3—C11—O4 | 122.98 (13) |
N1—C5—C7 | 114.72 (12) | O3—C11—C2 | 124.78 (13) |
C4—C5—C7 | 124.13 (13) | O4—C11—C2 | 112.24 (11) |
C1—C6—H6A | 109.5 | O4—C12—C13 | 107.06 (13) |
C1—C6—H6B | 109.5 | O4—C12—H12A | 110.3 |
H6A—C6—H6B | 109.5 | C13—C12—H12A | 110.3 |
C1—C6—H6C | 109.5 | O4—C12—H12B | 110.3 |
H6A—C6—H6C | 109.5 | C13—C12—H12B | 110.3 |
H6B—C6—H6C | 109.5 | H12A—C12—H12B | 108.6 |
C5—C7—H7A | 109.5 | C12—C13—H13A | 109.5 |
C5—C7—H7B | 109.5 | C12—C13—H13B | 109.5 |
H7A—C7—H7B | 109.5 | H13A—C13—H13B | 109.5 |
C5—C7—H7C | 109.5 | C12—C13—H13C | 109.5 |
H7A—C7—H7C | 109.5 | H13A—C13—H13C | 109.5 |
H7B—C7—H7C | 109.5 | H13B—C13—H13C | 109.5 |
O1—C8—O2 | 123.74 (12) | C5—N1—C1 | 120.60 (12) |
O1—C8—C4 | 125.24 (13) | C8—O2—C9 | 116.03 (11) |
O2—C8—C4 | 111.02 (11) | C11—O4—C12 | 115.71 (11) |
C1—C2—C3—C4 | 0.29 (19) | C9—C10—C11—C12 | −176.91 (12) |
C2—C3—C4—C5 | 1.11 (19) | C10—C11—C12—C13 | 13.4 (2) |
C3—C4—C5—C6 | −1.65 (14) | C11—C12—C13—N1 | 2.46 (9) |
C4—C5—C6—C7 | −179.72 (18) | C12—C13—N1—O1 | −162.64 (16) |
C5—C6—C7—C8 | 0.52 (11) | C13—N1—O1—O2 | 3.02 (4) |
C6—C7—C8—C9 | −172.90 (18) | N1—O1—O2—O3 | 3.67 (3) |
C7—C8—C9—C10 | 167.30 (19) | O1—O2—O3—O4 | −169.36 (7) |
C8—C9—C10—C11 | 2.37 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9A···O3i | 0.97 | 2.51 | 3.2478 (18) | 133 |
C6—H6B···Cgii | 0.96 | 2.67 | 3.4279 (16) | 136 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C13H17NO4 |
Mr | 251.28 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 4.5380 (6), 15.440 (2), 18.722 (2) |
β (°) | 90.502 (6) |
V (Å3) | 1311.7 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.58 × 0.34 × 0.25 |
Data collection | |
Diffractometer | Bruker APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2002) |
Tmin, Tmax | 0.942, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9968, 2977, 2442 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.128, 1.04 |
No. of reflections | 2977 |
No. of parameters | 170 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.23 |
Computer programs: APEX2 (Bruker,2003), SAINT (Bruker, 2003), SIR2002 (Burla et al., 2003), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and DIAMOND (Brandenburg & Berndt, 2001), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9A···O3i | 0.97 | 2.51 | 3.2478 (18) | 133 |
C6—H6B···Cgii | 0.96 | 2.67 | 3.4279 (16) | 136 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x−1, y, z. |
Acknowledgements
The authors are grateful to Dr Thierry Roisnel, Centre de Diffractométrie X (CDIFX) de Rennes, Université de Rennes 1, France, for data-collection facilities.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In continuation of our interest in the synthesis and structure determination of nitrogen heterocyclic compounds (e.g. Boulcina et al., 2007; Debache et al., 2008a; Debache et al., 2008b), herein, we report synthesis and crystallographic study of the title compound, (I), (Fig. 1), obtained from the oxidation of the corresponding 1,4-DHP.
The asymmetric unit of title compound contains a pyridine four times substituted by two dimethyl and two diethoxycarbonyl groups. As expected, The molecule is are approximately planar, the r.m.s. deviation for non-H atoms = 0.130Å with a maximum deviation from the mean plane = -0.3409 (19)Å for C13 atom.
The crystal structure can be described by two crossed layers which dihydropyridine ring is parallel to (-110) and (110) planes respectively (Fig.2).
The packing is stabilized by weak intermolecular interactions of C—H···O type (Figure 3) and the layers of dihydropyridine are linked together by C—H···π interactions (figure 4) involving the nitrogen heterocyclic ring (Cg), resulting in the formation of three dimensional network and reinforcing a cohesion of structure. Hydrogen-bonding parameters are listed in (table 1).