organic compounds
Ethyl 4-(4-hydroxyphenyl)-6-methyl-2-oxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate monohydrate
aSolid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore 560 012, India, bSchool of Chemistry, University of KwaZulu-Natal, Durban 4000, South Africa, cDepartment of Chemistry, Indian Institute of Science Education and Research, Bhopal 462 023, India, and dSchool of Pharmacy and Pharmacology, University of Kwazulu-Natal, Durban 4000, South Africa
*Correspondence e-mail: dchopra@iiserbhopal.ac.in
In the title compound, C14H16N2O4·H2O, the dihedral angles between the planes of the 4-hydroxyphenyl and ester groups with the plane of the six-membered tetrahydropyrimidine ring are 87.3 (1) and 75.9 (1)°, respectively. The is stabilized by O—H⋯O and N—H⋯O hydrogen bonding between the water molecule and the organic functionalities.
Related literature
Bignelli compounds are poly-functionalized dihydropyrimidines exhibiting a broad range of therapeutic and pharmacological properties, see: Atwal et al. (1991); Jauk et al. (2000); Kappe (2000); Kato (1984).
Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis Pro (Oxford Diffraction, 2009); cell CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SHELXL97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809037441/hg2566sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809037441/hg2566Isup2.hkl
A mixture of ethylacetoacetate (0.1 mol), para hydroxy substituted benzaldehyde (0.1 mol) and urea was refluxed in 50.0 mL of ethanol for 2.0 hrs in presence of concentrated hydrochloric acid as catalyst. The reaction completion was monitored through thin layer
and the reaction mixture was quenched in ice cold water. The precipitate obtained was filtered, dried and crystallized from methanol to obtain the title compound.The hydrogen atoms of the water molecule were located from a difference Fourier map and refined isotropically. The O—H bond lengths are in the range of 0.83 (3)—0.93 (3) Å. The remaining H atoms were positioned geometrically, with C—H = 0.93 Å, 0.96 Å, 0.97 Å, 0.98Å for aromatic, methyl, methylene and methine H atoms respectively and N—H = 0.86Å for amino H atoms and all refined using a riding model with Uiso(H)= 1.2 Ueq(C, N) for aromatic and amine hydrogen and 1.5 Ueq(C) for methyl, methylene and methine H atoms respectively.
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell
CrysAlis PRO (Oxford Diffraction, 2009); data reduction: CrysAlis PRO (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXL97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. : Molecular structure shows the atom labelling scheme with displacement ellipsoids for non-H atoms at 50% probability level. The dotted line shows the O—H···O intramolecular interaction. | |
Fig. 2. : The molecular packing depicting intermolecular N—H···O and O—H···O hydrogen bonds. |
C14H16N2O4·H2O | Z = 2 |
Mr = 294.30 | F(000) = 312 |
Triclinic, P1 | Dx = 1.371 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.7107 Å |
a = 5.6859 (2) Å | Cell parameters from 400 reflections |
b = 10.7190 (5) Å | θ = 1.0–28.0° |
c = 12.1980 (5) Å | µ = 0.11 mm−1 |
α = 85.267 (3)° | T = 292 K |
β = 83.990 (3)° | Plate, colorless |
γ = 74.936 (4)° | 0.38 × 0.24 × 0.15 mm |
V = 712.76 (6) Å3 |
Goniometer Xcalibur with Eos (Nova) detector diffractometer | 2792 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 2109 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.034 |
Detector resolution: 16.0839 pixels mm-1 | θmax = 26.0°, θmin = 3.4° |
ω scans | h = −7→7 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −13→13 |
Tmin = 0.951, Tmax = 0.984 | l = −15→15 |
18207 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.102 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.046P)2 + 0.1184P] where P = (Fo2 + 2Fc2)/3 |
2792 reflections | (Δ/σ)max < 0.000 |
201 parameters | Δρmax = 0.19 e Å−3 |
0 restraints | Δρmin = −0.14 e Å−3 |
C14H16N2O4·H2O | γ = 74.936 (4)° |
Mr = 294.30 | V = 712.76 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.6859 (2) Å | Mo Kα radiation |
b = 10.7190 (5) Å | µ = 0.11 mm−1 |
c = 12.1980 (5) Å | T = 292 K |
α = 85.267 (3)° | 0.38 × 0.24 × 0.15 mm |
β = 83.990 (3)° |
Goniometer Xcalibur with Eos (Nova) detector diffractometer | 2792 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2109 reflections with I > 2σ(I) |
Tmin = 0.951, Tmax = 0.984 | Rint = 0.034 |
18207 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.102 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.19 e Å−3 |
2792 reflections | Δρmin = −0.14 e Å−3 |
201 parameters |
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.34d Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
H1W | 0.159 (5) | 0.640 (3) | 0.786 (2) | 0.096 (9)* | |
H2W | 0.059 (4) | 0.773 (3) | 0.799 (2) | 0.096 (8)* | |
O1 | 0.9249 (2) | −0.09595 (10) | 0.89786 (9) | 0.0468 (3) | |
O4 | 0.4417 (2) | 0.21103 (11) | 0.32278 (8) | 0.0479 (3) | |
H4 | 0.5634 | 0.2371 | 0.3022 | 0.072* | |
O3 | −0.0136 (2) | 0.32510 (10) | 0.79355 (9) | 0.0446 (3) | |
C9 | 0.3842 (3) | 0.14292 (13) | 0.66438 (12) | 0.0322 (3) | |
C4 | 0.3717 (3) | 0.11045 (13) | 0.78842 (12) | 0.0346 (3) | |
H4A | 0.2225 | 0.0817 | 0.8101 | 0.041* | |
N2 | 0.5830 (2) | 0.00283 (11) | 0.81312 (10) | 0.0400 (3) | |
H2 | 0.6038 | −0.0650 | 0.7766 | 0.048* | |
C5 | 0.1804 (3) | 0.34545 (15) | 0.83520 (12) | 0.0391 (4) | |
C1 | 0.7456 (3) | −0.00217 (14) | 0.88495 (12) | 0.0352 (3) | |
N1 | 0.7088 (2) | 0.10279 (12) | 0.94695 (10) | 0.0416 (3) | |
H1 | 0.8040 | 0.0987 | 0.9982 | 0.050* | |
C3 | 0.3665 (3) | 0.22455 (14) | 0.85610 (12) | 0.0348 (3) | |
C12 | 0.4247 (3) | 0.19198 (14) | 0.43558 (12) | 0.0366 (4) | |
C13 | 0.5795 (3) | 0.22773 (15) | 0.50023 (12) | 0.0396 (4) | |
H13 | 0.6971 | 0.2686 | 0.4677 | 0.047* | |
C14 | 0.5585 (3) | 0.20247 (14) | 0.61345 (12) | 0.0378 (4) | |
H14 | 0.6642 | 0.2261 | 0.6563 | 0.045* | |
C11 | 0.2467 (3) | 0.13405 (15) | 0.48509 (13) | 0.0407 (4) | |
H11 | 0.1395 | 0.1117 | 0.4423 | 0.049* | |
C2 | 0.5263 (3) | 0.21559 (14) | 0.93180 (12) | 0.0368 (4) | |
C10 | 0.2282 (3) | 0.10937 (14) | 0.59840 (13) | 0.0379 (4) | |
H10 | 0.1090 | 0.0696 | 0.6309 | 0.046* | |
C6 | −0.1877 (3) | 0.43911 (17) | 0.74982 (15) | 0.0515 (4) | |
H6A | −0.1987 | 0.5121 | 0.7938 | 0.062* | |
H6B | −0.3484 | 0.4227 | 0.7537 | 0.062* | |
O2 | 0.1978 (2) | 0.45309 (11) | 0.85073 (11) | 0.0594 (4) | |
C8 | 0.5280 (4) | 0.31579 (16) | 1.01034 (14) | 0.0541 (5) | |
H8A | 0.3836 | 0.3856 | 1.0053 | 0.081* | |
H8B | 0.6701 | 0.3484 | 0.9917 | 0.081* | |
H8C | 0.5316 | 0.2776 | 1.0843 | 0.081* | |
C7 | −0.1064 (4) | 0.47022 (19) | 0.63274 (16) | 0.0673 (6) | |
H7A | −0.0706 | 0.3936 | 0.5920 | 0.101* | |
H7B | 0.0377 | 0.5015 | 0.6304 | 0.101* | |
H7C | −0.2341 | 0.5355 | 0.6005 | 0.101* | |
O5W | 0.1583 (3) | 0.71105 (16) | 0.75335 (11) | 0.0583 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0563 (7) | 0.0347 (6) | 0.0454 (6) | 0.0015 (5) | −0.0149 (5) | −0.0075 (5) |
O4 | 0.0647 (8) | 0.0479 (7) | 0.0323 (6) | −0.0128 (6) | −0.0113 (5) | −0.0060 (5) |
O3 | 0.0406 (6) | 0.0380 (6) | 0.0526 (7) | −0.0044 (5) | −0.0058 (5) | −0.0040 (5) |
C9 | 0.0347 (8) | 0.0270 (7) | 0.0340 (8) | −0.0034 (6) | −0.0057 (6) | −0.0065 (6) |
C4 | 0.0376 (8) | 0.0309 (8) | 0.0355 (8) | −0.0085 (6) | −0.0030 (6) | −0.0040 (6) |
N2 | 0.0543 (8) | 0.0273 (7) | 0.0376 (7) | −0.0035 (6) | −0.0129 (6) | −0.0076 (5) |
C5 | 0.0446 (9) | 0.0366 (9) | 0.0337 (8) | −0.0068 (7) | 0.0009 (7) | −0.0055 (6) |
C1 | 0.0470 (9) | 0.0292 (8) | 0.0282 (7) | −0.0077 (7) | −0.0026 (7) | −0.0009 (6) |
N1 | 0.0540 (9) | 0.0349 (7) | 0.0351 (7) | −0.0043 (6) | −0.0139 (6) | −0.0075 (5) |
C3 | 0.0422 (9) | 0.0321 (8) | 0.0291 (7) | −0.0082 (7) | 0.0005 (6) | −0.0046 (6) |
C12 | 0.0457 (9) | 0.0292 (8) | 0.0323 (8) | −0.0008 (7) | −0.0097 (7) | −0.0071 (6) |
C13 | 0.0460 (9) | 0.0399 (9) | 0.0357 (8) | −0.0154 (7) | −0.0034 (7) | −0.0053 (6) |
C14 | 0.0416 (9) | 0.0406 (9) | 0.0352 (8) | −0.0131 (7) | −0.0096 (7) | −0.0081 (6) |
C11 | 0.0390 (9) | 0.0409 (9) | 0.0440 (9) | −0.0057 (7) | −0.0170 (7) | −0.0106 (7) |
C2 | 0.0491 (9) | 0.0305 (8) | 0.0291 (7) | −0.0073 (7) | −0.0014 (7) | −0.0039 (6) |
C10 | 0.0342 (8) | 0.0362 (8) | 0.0442 (9) | −0.0080 (7) | −0.0066 (7) | −0.0057 (7) |
C6 | 0.0433 (10) | 0.0427 (10) | 0.0637 (11) | 0.0012 (8) | −0.0094 (8) | −0.0089 (8) |
O2 | 0.0660 (8) | 0.0335 (7) | 0.0786 (9) | −0.0046 (6) | −0.0223 (7) | −0.0095 (6) |
C8 | 0.0767 (13) | 0.0410 (10) | 0.0427 (9) | −0.0033 (9) | −0.0164 (9) | −0.0146 (7) |
C7 | 0.0882 (16) | 0.0475 (11) | 0.0607 (12) | −0.0030 (10) | −0.0195 (11) | −0.0001 (9) |
O5W | 0.0737 (10) | 0.0535 (9) | 0.0480 (8) | −0.0163 (7) | −0.0009 (7) | −0.0085 (7) |
O1—C1 | 1.2450 (18) | C12—C13 | 1.383 (2) |
O4—C12 | 1.3712 (18) | C13—C14 | 1.384 (2) |
O4—H4 | 0.8200 | C13—H13 | 0.9300 |
O3—C5 | 1.3354 (19) | C14—H14 | 0.9300 |
O3—C6 | 1.4601 (19) | C11—C10 | 1.384 (2) |
C9—C14 | 1.382 (2) | C11—H11 | 0.9300 |
C9—C10 | 1.388 (2) | C2—C8 | 1.500 (2) |
C9—C4 | 1.523 (2) | C10—H10 | 0.9300 |
C4—N2 | 1.4710 (18) | C6—C7 | 1.493 (3) |
C4—C3 | 1.523 (2) | C6—H6A | 0.9700 |
C4—H4A | 0.9800 | C6—H6B | 0.9700 |
N2—C1 | 1.3268 (19) | C8—H8A | 0.9600 |
N2—H2 | 0.8600 | C8—H8B | 0.9600 |
C5—O2 | 1.2150 (19) | C8—H8C | 0.9600 |
C5—C3 | 1.467 (2) | C7—H7A | 0.9600 |
C1—N1 | 1.3662 (19) | C7—H7B | 0.9600 |
N1—C2 | 1.3872 (19) | C7—H7C | 0.9600 |
N1—H1 | 0.8600 | O5W—H1W | 0.83 (3) |
C3—C2 | 1.343 (2) | O5W—H2W | 0.93 (3) |
C12—C11 | 1.382 (2) | ||
C12—O4—H4 | 109.5 | C9—C14—C13 | 121.54 (14) |
C5—O3—C6 | 116.65 (13) | C9—C14—H14 | 119.2 |
C14—C9—C10 | 117.91 (13) | C13—C14—H14 | 119.2 |
C14—C9—C4 | 120.72 (13) | C12—C11—C10 | 119.95 (14) |
C10—C9—C4 | 121.32 (13) | C12—C11—H11 | 120.0 |
N2—C4—C9 | 108.75 (11) | C10—C11—H11 | 120.0 |
N2—C4—C3 | 109.61 (12) | C3—C2—N1 | 120.40 (13) |
C9—C4—C3 | 113.46 (12) | C3—C2—C8 | 126.94 (14) |
N2—C4—H4A | 108.3 | N1—C2—C8 | 112.60 (13) |
C9—C4—H4A | 108.3 | C11—C10—C9 | 121.23 (14) |
C3—C4—H4A | 108.3 | C11—C10—H10 | 119.4 |
C1—N2—C4 | 127.84 (12) | C9—C10—H10 | 119.4 |
C1—N2—H2 | 116.1 | O3—C6—C7 | 109.76 (14) |
C4—N2—H2 | 116.1 | O3—C6—H6A | 109.7 |
O2—C5—O3 | 122.53 (15) | C7—C6—H6A | 109.7 |
O2—C5—C3 | 125.31 (15) | O3—C6—H6B | 109.7 |
O3—C5—C3 | 112.14 (13) | C7—C6—H6B | 109.7 |
O1—C1—N2 | 123.60 (13) | H6A—C6—H6B | 108.2 |
O1—C1—N1 | 119.71 (14) | C2—C8—H8A | 109.5 |
N2—C1—N1 | 116.69 (13) | C2—C8—H8B | 109.5 |
C1—N1—C2 | 123.59 (13) | H8A—C8—H8B | 109.5 |
C1—N1—H1 | 118.2 | C2—C8—H8C | 109.5 |
C2—N1—H1 | 118.2 | H8A—C8—H8C | 109.5 |
C2—C3—C5 | 120.99 (13) | H8B—C8—H8C | 109.5 |
C2—C3—C4 | 121.53 (13) | C6—C7—H7A | 109.5 |
C5—C3—C4 | 117.47 (13) | C6—C7—H7B | 109.5 |
O4—C12—C11 | 118.08 (13) | H7A—C7—H7B | 109.5 |
O4—C12—C13 | 122.33 (15) | C6—C7—H7C | 109.5 |
C11—C12—C13 | 119.58 (14) | H7A—C7—H7C | 109.5 |
C12—C13—C14 | 119.76 (15) | H7B—C7—H7C | 109.5 |
C12—C13—H13 | 120.1 | H1W—O5W—H2W | 105 (2) |
C14—C13—H13 | 120.1 | ||
C14—C9—C4—N2 | −71.27 (17) | C9—C4—C3—C5 | 52.91 (18) |
C10—C9—C4—N2 | 106.19 (15) | O4—C12—C13—C14 | −178.02 (14) |
C14—C9—C4—C3 | 50.98 (18) | C11—C12—C13—C14 | 1.5 (2) |
C10—C9—C4—C3 | −131.56 (14) | C10—C9—C14—C13 | −0.3 (2) |
C9—C4—N2—C1 | 126.81 (16) | C4—C9—C14—C13 | 177.20 (13) |
C3—C4—N2—C1 | 2.3 (2) | C12—C13—C14—C9 | −0.6 (2) |
C6—O3—C5—O2 | 10.0 (2) | O4—C12—C11—C10 | 177.99 (13) |
C6—O3—C5—C3 | −168.50 (13) | C13—C12—C11—C10 | −1.6 (2) |
C4—N2—C1—O1 | −177.32 (14) | C5—C3—C2—N1 | −176.83 (13) |
C4—N2—C1—N1 | 2.8 (2) | C4—C3—C2—N1 | 2.9 (2) |
O1—C1—N1—C2 | 174.44 (14) | C5—C3—C2—C8 | 5.9 (2) |
N2—C1—N1—C2 | −5.6 (2) | C4—C3—C2—C8 | −174.35 (15) |
O2—C5—C3—C2 | 26.2 (2) | C1—N1—C2—C3 | 2.9 (2) |
O3—C5—C3—C2 | −155.34 (14) | C1—N1—C2—C8 | −179.51 (15) |
O2—C5—C3—C4 | −153.49 (16) | C12—C11—C10—C9 | 0.7 (2) |
O3—C5—C3—C4 | 24.92 (18) | C14—C9—C10—C11 | 0.3 (2) |
N2—C4—C3—C2 | −5.05 (19) | C4—C9—C10—C11 | −177.23 (13) |
C9—C4—C3—C2 | −126.82 (15) | C5—O3—C6—C7 | 85.59 (18) |
N2—C4—C3—C5 | 174.68 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.86 | 2.09 | 2.9411 (17) | 171 |
O5W—H1W···O2 | 0.83 (3) | 2.06 (3) | 2.881 (2) | 172 (3) |
N2—H2···O4ii | 0.86 | 2.14 | 2.978 (2) | 165 |
O5W—H2W···O1iii | 0.93 (3) | 1.88 (3) | 2.799 (2) | 167 (2) |
O4—H4···O5Wiv | 0.82 | 1.86 | 2.674 (2) | 176 |
Symmetry codes: (i) −x+2, −y, −z+2; (ii) −x+1, −y, −z+1; (iii) x−1, y+1, z; (iv) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C14H16N2O4·H2O |
Mr | 294.30 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 292 |
a, b, c (Å) | 5.6859 (2), 10.7190 (5), 12.1980 (5) |
α, β, γ (°) | 85.267 (3), 83.990 (3), 74.936 (4) |
V (Å3) | 712.76 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.38 × 0.24 × 0.15 |
Data collection | |
Diffractometer | Goniometer Xcalibur with Eos (Nova) detector diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.951, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18207, 2792, 2109 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.102, 1.09 |
No. of reflections | 2792 |
No. of parameters | 201 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.19, −0.14 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and CAMERON (Watkin et al., 1993), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.8600 | 2.09 | 2.9411 (17) | 171.00 |
O5W—H1W···O2 | 0.83 (3) | 2.06 (3) | 2.881 (2) | 172 (3) |
N2—H2···O4ii | 0.8600 | 2.14 | 2.978 (2) | 165.00 |
O5W—H2W···O1iii | 0.93 (3) | 1.88 (3) | 2.799 (2) | 167 (2) |
O4—H4···O5Wiv | 0.8200 | 1.86 | 2.674 (2) | 176.00 |
Symmetry codes: (i) −x+2, −y, −z+2; (ii) −x+1, −y, −z+1; (iii) x−1, y+1, z; (iv) −x+1, −y+1, −z+1. |
Acknowledgements
We are grateful for funding under DST–FIST (Level II) for the Oxford Diffraction facility at SSCU. SKN thanks the CSIR (SRF), India, for financial support.
References
Atwal, K. S., Swanson, B. N., Unger, S. E., Floyd, D. M., Moreland, S., Hedberg, A. & O Reilly, B. C. (1991). J. Med. Chem. 34, 806–811. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Jauk, B., Pernat, T. & Kappe, C. O. (2000). Molecules, 5, 227–239. Web of Science CrossRef CAS Google Scholar
Kappe, C. O. (2000). Eur. J. Med. Chem. 35, 1043–1052. Web of Science CrossRef PubMed CAS Google Scholar
Kato, T. (1984). Chem. Abstr. 102, 132067. Google Scholar
Oxford Diffraction (2009). CrysAlis CCD and CrysAlisPro RED. Oxford Diffraction Ltd, Yarnton, England. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Watkin, D. M., Pearce, L. & Prout, C. K. (1993). CAMERON. Chemical Crystallography Laboratory, University of Oxford, England. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Bignelli compounds are poly-functionalized dihydropyrimidine (DHPM) exhibiting a broad range of therapeutic and pharmacological properties (Kappe, 2000), namely, anticarcinogenic (Kato, 1984), antihypertensive (Atwal et al., 1991) and calcium channel modulators (Jauk et al., 2000, and references therein). It is observed that the six-membered tetrahydropyrimidine ring exists in a nearly planar conformation (Figure 1). The ester moiety is in an s-trans conformation with respect to the endocyclic double bond. The water molecule is held by O—H···O hydrogen bond, involving H1W with the oxygen of the ester carbonyl moiety. The other hydrogen atom H2W forms intermolecular O—H···O hydrogen bond with the carbonyl group of the tetrahydropyrimidine ring, thereby acting as a bridge between two molecules. Furthermore, the amino hydrogen H1 forms centrosymmetric N—H···O dimers. The other acidic hydrogen H2 forms N—H···O hydrogen bond with the phenolic oxygen atom. The phenolic hydrogen in turn forms O—H···O intermolecular hydrogen bond with the oxygen of the water molecule (Figure 2).