metal-organic compounds
Poly[[aqua(μ2-oxalato)(μ2-2-oxidopyridinium-3-carboxylato)holmium(III)] monohydrate]
aSchool of Chemistry and Environment, South China Normal University, Guangzhou 510006, People's Republic of China, and bKey Laboratory of Technology on Electrochemical Energy Storage and Power Generation in Guangdong Universities, South China Normal University, Guangzhou 510006, People's Republic of China
*Correspondence e-mail: luoyf2004@yahoo.com.cn
In the title complex, {[Ho(C2O4)(C6H4NO3)(H2O)]·(H2O)}n, the HoIII ion is coordinated by three O atoms from two 2-oxidopyridinium-3-carboxylate ligands, four O atoms from two oxalate ligands and one water molecule in a distorted bicapped trigonal-prismatic geometry. The 2-oxidopyridinium-3-carboxylate and oxalate ligands link the HoIII ions into a layer in (100). These layers are further connected by intermolecular O—H⋯O hydrogen bonds involving the coordinated water molecules to assemble a three-dimensional supramolecular network. The uncoordinated water molecule is involved in N—H⋯O and O—H⋯O hydrogen bonds within the layer.
Related literature
For general background to molecular self-assembly of supramolecular architectures, see: Deng et al. (2008); Zeng et al. (2007). For 2-oxidopyridinium-3-carboxylic acid and oxalic acid as building blocks, see: Huang et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536809036344/hy2226sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809036344/hy2226Isup2.hkl
A mixture of Ho2O3 (0.375 g, 1 mmol), 2-oxynicotinic acid (0.127 g, 1 mmol), oxalic acid (0.09 g, 1 mmol), water (10 ml) in the presence of HNO3 (0.024 g, 0.385 mmol) was stirred vigorously for 20 min and then sealed in a Teflon-lined stainless-steel autoclave (20 ml capacity). The autoclave was heated and maintained at 446 K for 2 d, and then cooled to room temperature at 5 K h-1, giving colourless block crystals.
Water H atoms were tentatively located in difference Fourier maps and refined with distance restraints of O—H = 0.84 (1) and H···H = 1.35 (1) Å, and with a fixed Uiso(H) = 0.064 Å2. H atoms attached to C and N atoms were placed at calculated positions and treated as riding on their parent atoms, with C—H = 0.93 and N—H= 0.86 Å and with Uiso(H) = 1.2Ueq(C,N). The highest residual electron density was found 0.94 Å from Ho1 and the deepest hole 0.91 Å from Ho1.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 30% probability level. H atoms have been omitted for clarity. [Symmetry codes: (i) -x, -y, 1 - z; (ii) -x, 1 - y, -z; (iii) -x, 1 - y, 1 - z.] | |
Fig. 2. View of a layered network of the title compound. |
[Ho(C2O4)(C6H4NO3)(H2O)]·H2O | Z = 2 |
Mr = 427.08 | F(000) = 404 |
Triclinic, P1 | Dx = 2.524 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.5391 (11) Å | Cell parameters from 2285 reflections |
b = 9.5305 (16) Å | θ = 2.2–28.1° |
c = 9.7391 (16) Å | µ = 7.09 mm−1 |
α = 71.810 (2)° | T = 296 K |
β = 78.862 (2)° | Block, colourless |
γ = 80.359 (2)° | 0.20 × 0.18 × 0.17 mm |
V = 562.01 (16) Å3 |
Bruker APEXII CCD diffractometer | 1983 independent reflections |
Radiation source: fine-focus sealed tube | 1862 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ϕ and ω scans | θmax = 25.2°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −7→6 |
Tmin = 0.332, Tmax = 0.379 | k = −11→11 |
2884 measured reflections | l = −11→10 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0695P)2] where P = (Fo2 + 2Fc2)/3 |
1983 reflections | (Δ/σ)max < 0.001 |
184 parameters | Δρmax = 2.75 e Å−3 |
6 restraints | Δρmin = −2.19 e Å−3 |
[Ho(C2O4)(C6H4NO3)(H2O)]·H2O | γ = 80.359 (2)° |
Mr = 427.08 | V = 562.01 (16) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.5391 (11) Å | Mo Kα radiation |
b = 9.5305 (16) Å | µ = 7.09 mm−1 |
c = 9.7391 (16) Å | T = 296 K |
α = 71.810 (2)° | 0.20 × 0.18 × 0.17 mm |
β = 78.862 (2)° |
Bruker APEXII CCD diffractometer | 1983 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1862 reflections with I > 2σ(I) |
Tmin = 0.332, Tmax = 0.379 | Rint = 0.018 |
2884 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 6 restraints |
wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 2.75 e Å−3 |
1983 reflections | Δρmin = −2.19 e Å−3 |
184 parameters |
x | y | z | Uiso*/Ueq | ||
Ho1 | 0.09083 (4) | 0.29059 (3) | 0.30045 (3) | 0.01784 (15) | |
O4 | −0.1655 (7) | 0.3863 (5) | 0.1370 (5) | 0.0219 (10) | |
O3 | 0.1549 (8) | 0.1295 (6) | 0.1626 (5) | 0.0311 (11) | |
O6 | 0.1351 (9) | 0.3228 (5) | 0.5267 (6) | 0.0338 (12) | |
O1 | 0.2127 (8) | 0.0581 (5) | 0.4520 (5) | 0.0251 (10) | |
O5 | −0.2292 (7) | 0.5458 (5) | −0.0767 (5) | 0.0258 (10) | |
N1 | 0.2729 (11) | −0.0557 (8) | 0.0581 (7) | 0.0366 (15) | |
H1 | 0.2407 | 0.0054 | −0.0227 | 0.044* | |
C6 | 0.2307 (12) | −0.0067 (8) | 0.1802 (8) | 0.0266 (15) | |
C8 | 0.0606 (11) | 0.4422 (8) | 0.5578 (8) | 0.0261 (15) | |
C5 | 0.3624 (14) | −0.1948 (10) | 0.0574 (10) | 0.044 (2) | |
H5 | 0.3862 | −0.2213 | −0.0290 | 0.052* | |
C4 | 0.4170 (14) | −0.2947 (9) | 0.1807 (10) | 0.048 (3) | |
H4 | 0.4851 | −0.3882 | 0.1795 | 0.057* | |
C3 | 0.3695 (13) | −0.2550 (9) | 0.3094 (10) | 0.0396 (19) | |
H3 | 0.3999 | −0.3250 | 0.3960 | 0.048* | |
C2 | 0.2776 (10) | −0.1133 (7) | 0.3126 (7) | 0.0251 (15) | |
C1 | 0.2306 (10) | −0.0747 (7) | 0.4529 (7) | 0.0236 (14) | |
C7 | −0.1147 (10) | 0.4807 (7) | 0.0161 (7) | 0.0190 (13) | |
O2W | 0.2278 (13) | 0.0635 (9) | 0.7646 (8) | 0.0621 (19) | |
O2 | 0.2125 (7) | −0.1813 (5) | 0.5703 (5) | 0.0262 (10) | |
O7 | 0.0730 (9) | 0.4748 (6) | 0.6691 (5) | 0.0358 (13) | |
O1W | 0.4526 (8) | 0.2970 (7) | 0.2822 (6) | 0.0427 (15) | |
H3W | 0.164 (16) | 0.149 (7) | 0.758 (10) | 0.064* | |
H4W | 0.203 (16) | 0.041 (10) | 0.691 (6) | 0.064* | |
H1W | 0.508 (12) | 0.263 (11) | 0.359 (5) | 0.064* | |
H2W | 0.549 (10) | 0.332 (11) | 0.215 (6) | 0.064* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ho1 | 0.0166 (2) | 0.0197 (2) | 0.0158 (2) | −0.00221 (12) | −0.00168 (12) | −0.00363 (13) |
O4 | 0.018 (2) | 0.027 (2) | 0.017 (2) | −0.0088 (18) | −0.0019 (18) | 0.0028 (19) |
O3 | 0.039 (3) | 0.031 (3) | 0.020 (2) | 0.002 (2) | −0.005 (2) | −0.007 (2) |
O6 | 0.046 (3) | 0.023 (3) | 0.034 (3) | 0.010 (2) | −0.013 (2) | −0.013 (2) |
O1 | 0.027 (3) | 0.024 (2) | 0.022 (2) | −0.0029 (19) | −0.0024 (19) | −0.0050 (19) |
O5 | 0.016 (2) | 0.035 (3) | 0.023 (2) | −0.0035 (19) | −0.0071 (19) | −0.001 (2) |
N1 | 0.040 (4) | 0.043 (4) | 0.028 (3) | −0.009 (3) | 0.003 (3) | −0.016 (3) |
C6 | 0.025 (4) | 0.027 (4) | 0.029 (4) | −0.007 (3) | −0.001 (3) | −0.010 (3) |
C8 | 0.024 (4) | 0.026 (4) | 0.028 (4) | −0.005 (3) | −0.003 (3) | −0.007 (3) |
C5 | 0.048 (5) | 0.046 (5) | 0.042 (5) | −0.011 (4) | 0.014 (4) | −0.028 (4) |
C4 | 0.055 (6) | 0.036 (5) | 0.050 (6) | −0.008 (4) | 0.013 (5) | −0.021 (5) |
C3 | 0.038 (5) | 0.032 (4) | 0.047 (5) | 0.000 (3) | 0.001 (4) | −0.015 (4) |
C2 | 0.018 (3) | 0.025 (3) | 0.029 (4) | −0.008 (3) | 0.007 (3) | −0.006 (3) |
C1 | 0.012 (3) | 0.026 (3) | 0.028 (4) | 0.000 (3) | −0.003 (3) | −0.003 (3) |
C7 | 0.018 (3) | 0.020 (3) | 0.020 (3) | −0.006 (2) | 0.001 (3) | −0.007 (3) |
O2W | 0.069 (5) | 0.078 (5) | 0.041 (4) | −0.022 (4) | −0.020 (4) | −0.005 (4) |
O2 | 0.019 (2) | 0.027 (3) | 0.027 (3) | −0.0043 (19) | −0.0037 (19) | 0.002 (2) |
O7 | 0.056 (4) | 0.031 (3) | 0.024 (3) | 0.008 (2) | −0.018 (2) | −0.013 (2) |
O1W | 0.021 (3) | 0.062 (4) | 0.029 (3) | −0.012 (3) | −0.008 (2) | 0.015 (3) |
Ho1—O1 | 2.354 (5) | C6—C2 | 1.421 (10) |
Ho1—O2i | 2.348 (5) | C8—O7 | 1.237 (9) |
Ho1—O3 | 2.279 (5) | C8—C8iii | 1.546 (15) |
Ho1—O4 | 2.406 (4) | C5—C4 | 1.347 (13) |
Ho1—O5ii | 2.364 (5) | C5—H5 | 0.9300 |
Ho1—O6 | 2.394 (5) | C4—C3 | 1.384 (11) |
Ho1—O7iii | 2.392 (5) | C4—H4 | 0.9300 |
Ho1—O1W | 2.348 (5) | C3—C2 | 1.390 (10) |
O4—C7 | 1.262 (8) | C3—H3 | 0.9300 |
O3—C6 | 1.279 (9) | C2—C1 | 1.487 (10) |
O6—C8 | 1.263 (9) | C1—O2 | 1.271 (8) |
O1—C1 | 1.249 (8) | C7—C7ii | 1.554 (12) |
O5—C7 | 1.232 (8) | O2W—H3W | 0.84 (7) |
O5—Ho1ii | 2.364 (4) | O2W—H4W | 0.86 (7) |
N1—C5 | 1.358 (11) | O1W—H1W | 0.84 (6) |
N1—C6 | 1.373 (10) | O1W—H2W | 0.85 (7) |
N1—H1 | 0.8600 | ||
O3—Ho1—O1W | 90.4 (2) | C5—N1—C6 | 123.9 (7) |
O3—Ho1—O2i | 90.37 (18) | C5—N1—H1 | 118.0 |
O1W—Ho1—O2i | 148.26 (17) | C6—N1—H1 | 118.0 |
O3—Ho1—O1 | 73.45 (17) | O3—C6—N1 | 116.8 (7) |
O1W—Ho1—O1 | 75.15 (18) | O3—C6—C2 | 127.2 (7) |
O2i—Ho1—O1 | 74.69 (16) | N1—C6—C2 | 116.1 (7) |
O3—Ho1—O5ii | 81.80 (17) | O7—C8—O6 | 127.4 (7) |
O1W—Ho1—O5ii | 67.83 (16) | O7—C8—C8iii | 117.7 (8) |
O2i—Ho1—O5ii | 143.49 (16) | O6—C8—C8iii | 114.9 (8) |
O1—Ho1—O5ii | 134.91 (16) | C4—C5—N1 | 120.6 (8) |
O3—Ho1—O7iii | 148.06 (18) | C4—C5—H5 | 119.7 |
O1W—Ho1—O7iii | 105.7 (2) | N1—C5—H5 | 119.7 |
O2i—Ho1—O7iii | 89.77 (18) | C5—C4—C3 | 118.5 (8) |
O1—Ho1—O7iii | 136.83 (16) | C5—C4—H4 | 120.7 |
O5ii—Ho1—O7iii | 79.25 (18) | C3—C4—H4 | 120.7 |
O3—Ho1—O6 | 144.55 (17) | C4—C3—C2 | 121.7 (8) |
O1W—Ho1—O6 | 75.0 (2) | C4—C3—H3 | 119.1 |
O2i—Ho1—O6 | 86.35 (18) | C2—C3—H3 | 119.1 |
O1—Ho1—O6 | 71.64 (16) | C3—C2—C6 | 119.1 (7) |
O5ii—Ho1—O6 | 119.81 (18) | C3—C2—C1 | 120.1 (7) |
O7iii—Ho1—O6 | 67.30 (17) | C6—C2—C1 | 120.8 (6) |
O3—Ho1—O4 | 77.17 (17) | O1—C1—O2 | 122.8 (6) |
O1W—Ho1—O4 | 135.57 (16) | O1—C1—C2 | 119.9 (6) |
O2i—Ho1—O4 | 75.25 (15) | O2—C1—C2 | 117.3 (6) |
O1—Ho1—O4 | 137.32 (16) | O5—C7—O4 | 126.5 (6) |
O5ii—Ho1—O4 | 68.24 (14) | O5—C7—C7ii | 117.4 (7) |
O7iii—Ho1—O4 | 72.00 (17) | O4—C7—C7ii | 116.0 (7) |
O6—Ho1—O4 | 135.14 (16) | H3W—O2W—H4W | 105 (9) |
C7—O4—Ho1 | 118.2 (4) | C1—O2—Ho1i | 128.4 (4) |
C6—O3—Ho1 | 136.0 (5) | C8—O7—Ho1iii | 119.8 (5) |
C8—O6—Ho1 | 120.3 (5) | Ho1—O1W—H1W | 119 (6) |
C1—O1—Ho1 | 136.8 (4) | Ho1—O1W—H2W | 136 (6) |
C7—O5—Ho1ii | 119.9 (4) | H1W—O1W—H2W | 106 (3) |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x, −y+1, −z; (iii) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O2iv | 0.84 (6) | 2.02 (6) | 2.737 (7) | 142 (8) |
O1W—H2W···O4v | 0.85 (7) | 1.96 (4) | 2.749 (7) | 154 (8) |
O2W—H3W···O6 | 0.84 (7) | 2.36 (11) | 2.882 (10) | 121 (8) |
O2W—H4W···O1 | 0.86 (7) | 2.27 (3) | 3.082 (8) | 157 (9) |
N1—H1···O2Wvi | 0.86 | 1.99 | 2.781 (10) | 154 |
Symmetry codes: (iv) −x+1, −y, −z+1; (v) x+1, y, z; (vi) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | [Ho(C2O4)(C6H4NO3)(H2O)]·H2O |
Mr | 427.08 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 6.5391 (11), 9.5305 (16), 9.7391 (16) |
α, β, γ (°) | 71.810 (2), 78.862 (2), 80.359 (2) |
V (Å3) | 562.01 (16) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 7.09 |
Crystal size (mm) | 0.20 × 0.18 × 0.17 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.332, 0.379 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2884, 1983, 1862 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.599 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.090, 1.06 |
No. of reflections | 1983 |
No. of parameters | 184 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 2.75, −2.19 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 1999).
Ho1—O1 | 2.354 (5) | Ho1—O5ii | 2.364 (5) |
Ho1—O2i | 2.348 (5) | Ho1—O6 | 2.394 (5) |
Ho1—O3 | 2.279 (5) | Ho1—O7iii | 2.392 (5) |
Ho1—O4 | 2.406 (4) | Ho1—O1W | 2.348 (5) |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x, −y+1, −z; (iii) −x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1W···O2iv | 0.84 (6) | 2.02 (6) | 2.737 (7) | 142 (8) |
O1W—H2W···O4v | 0.85 (7) | 1.96 (4) | 2.749 (7) | 154 (8) |
O2W—H3W···O6 | 0.84 (7) | 2.36 (11) | 2.882 (10) | 121 (8) |
O2W—H4W···O1 | 0.86 (7) | 2.27 (3) | 3.082 (8) | 157 (9) |
N1—H1···O2Wvi | 0.86 | 1.99 | 2.781 (10) | 153.5 |
Symmetry codes: (iv) −x+1, −y, −z+1; (v) x+1, y, z; (vi) x, y, z−1. |
Acknowledgements
The authors acknowledge the Chan Xue Yan Cooperative Special Project of Guangdong Province and the Ministry of Science and Technology of China (project No. 2007A090302046), the Project of Science and Technology of Guangdong Province (project No. 2007A020200002-4) and the Natural Science Foundation of Guangdong Province (No. 9151063101000037) for supporting this work.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Molecular self-assembly of supramolecular architectures has received much attention during recent decades (Deng et al., 2008; Zeng et al., 2007). The structures and properties of such systems depend on the coordination and geometric preferences of both the central metal ions and the bridging building blocks, as well as the influence of weaker non-covalent interactions, such as hydrogen bonds and π–π stacking interactions. As a building block, 2-oxynicotinic acid and oxalic acid are good ligands with multifunctional coordination sites providing a high likelihood for the generation of structures with high dimensions (Huang et al., 2009). Recently, we obtained the title coordination polymer, which was synthesized under hydrothermal conditions.
In the title compound (Fig. 1), the HoIII centre is eight-coordinated by seven O atoms from two 2-oxynicotinate ligands and two oxalate ligands, and by one water molecule in a distorted bicapped trigonal prismatic geometry, with Ho—O distances and O—Ho—O angles ranging from 2.279 (5) to 2.406 (4) Å and 67.30 (17) to 148.26 (17)°, respectively (Table 1). The carboxylate groups of the 2-oxynicotinates and oxalates act as bridging ligands, linking the Ho centres into a layer parallel to the (100) plane (Fig. 2). The layers are further connected by intermolecular O—H···O hydrogen bonds involving the coordinated water molecules into a three-dimensional supramolecular network (Table 2). The uncoordinated water molecule is involved in N—H···O and O—H···O hydrogen bonds within the layer (Table 2).