metal-organic compounds
Bis[4-oxido-2-oxo-2,3-dihydropyrimidin-1-ium-5-carboxylato(1.5−)-κ2O4,O5]bis(1,10-phenanthroline-κ2N,N′)dysprosium(III) dihydrate
aCollege of Chemistry and Chemical Engineering, Guangxi Normal University, Yucai Road 15, Guilin 541004, People's Republic of China
*Correspondence e-mail: chenziluczl@yahoo.co.uk
In the title compound, [Dy(C5H2.5N2O4)2(C12H8N2)2]·2H2O, the DyIII ion is located on a twofold rotation axis and is coordinated in a square-antiprismatic geometry by two chelating 1,10-phenanthroline molecules as well as two 4-oxido-2-oxo-2,3-dihydropyrimidin-1-ium-5-carboxylato(1.5−) anions. N—H⋯O and O—H⋯O hydrogen bonds help to stabilize the The H atom involved in an N—H⋯N hydrogen bond is disordered around a twofold rotation axis.
Related literature
For isostructural lanthanide complexes with 2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid, see: Sun & Jin (2004a,b); Xing et al. (2008a); Xiong et al. (2008a,b). For other metal complexes of 2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid, see: Hueso-Ureña et al. (1993, 1996); Baran et al. (1996); Luo et al. (2002); Maistralis et al. (1991, 1992); Xing et al. (2008b). For the role played by hydrogen bonds in stabilizing structures, see: Chen et al. (2006); Arora et al. (2009); Jagan & Sivakumar (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809036848/pb2007sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809036848/pb2007Isup2.hkl
A mixture of 2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid (0.0312 g, 0.2 mmol), DyCl3.6H2O (0.0754 g, 0.2 mmol), Phen.H2O (0.0396 g, 0.2 mmol), NaOH (0.00800 g, 0.2 mmol), water (15 ml) was sealed in a 25 ml,Teflon-lined stainless-steel reactor and heated to 383 K for 120 h, it was then cooled over 48 h, light yellow crystals were isolated in 80% yield. Elemental analysis for C34H25DyN8O10, calculated: C 47.04, H 2.90, N 12.91%; found: C 47.49, H 2.96, N 13.24%.
H atoms of the water molecule were located in a difference Fourier map and allowed to ride on their parent atoms [Uiso(H) = 1.5Ueq(O)]. Other H atoms were placed at calculated positions (C–H = 0.93 Å and N—H = 0.86 Å) and were included in the
in the riding model approximation, with Uiso(H) = 1.2Ueq(C, N). The pyrimidine hydrogen atom H3 is shared by two N—H groups and thus has an occupancy factor of 0.5.Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Dy(C5H2.5N2O4)2(C12H8N2)2]·2H2O | F(000) = 1724 |
Mr = 868.12 | Dx = 1.792 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 4430 reflections |
a = 17.143 (2) Å | θ = 2.3–26.9° |
b = 14.4470 (17) Å | µ = 2.40 mm−1 |
c = 13.2211 (16) Å | T = 295 K |
β = 100.613 (2)° | Prism, yellow |
V = 3218.3 (7) Å3 | 0.10 × 0.03 × 0.02 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 2842 independent reflections |
Radiation source: fine-focus sealed tube | 2619 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | h = −20→20 |
Tmin = 0.796, Tmax = 0.954 | k = −17→17 |
11116 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.068 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0366P)2 + 4.1092P] where P = (Fo2 + 2Fc2)/3 |
2842 reflections | (Δ/σ)max = 0.001 |
240 parameters | Δρmax = 0.93 e Å−3 |
0 restraints | Δρmin = −1.22 e Å−3 |
[Dy(C5H2.5N2O4)2(C12H8N2)2]·2H2O | V = 3218.3 (7) Å3 |
Mr = 868.12 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 17.143 (2) Å | µ = 2.40 mm−1 |
b = 14.4470 (17) Å | T = 295 K |
c = 13.2211 (16) Å | 0.10 × 0.03 × 0.02 mm |
β = 100.613 (2)° |
Bruker APEXII CCD area-detector diffractometer | 2842 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 2619 reflections with I > 2σ(I) |
Tmin = 0.796, Tmax = 0.954 | Rint = 0.037 |
11116 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.068 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.93 e Å−3 |
2842 reflections | Δρmin = −1.22 e Å−3 |
240 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Dy | 0.0000 | 0.612148 (16) | 0.7500 | 0.02165 (10) | |
N1 | 0.03494 (19) | 0.6959 (2) | 0.5922 (2) | 0.0299 (7) | |
N2 | 0.09455 (19) | 0.7496 (2) | 0.7881 (3) | 0.0318 (8) | |
N3 | 0.2176 (2) | 0.3312 (2) | 0.9692 (2) | 0.0379 (9) | |
H3 | 0.2412 | 0.2796 | 0.9869 | 0.046* | 0.50 |
N4 | 0.16685 (19) | 0.4740 (2) | 1.0061 (2) | 0.0295 (8) | |
H4 | 0.1617 | 0.5157 | 1.0509 | 0.035* | |
O1 | 0.09579 (16) | 0.56623 (18) | 0.88770 (19) | 0.0302 (6) | |
O2 | 0.07048 (16) | 0.50051 (18) | 0.68831 (19) | 0.0327 (6) | |
O3 | 0.15320 (18) | 0.38990 (19) | 0.6597 (2) | 0.0362 (7) | |
O4 | 0.2306 (2) | 0.38078 (19) | 1.1355 (2) | 0.0437 (8) | |
C1 | 0.1236 (2) | 0.4394 (3) | 0.7192 (3) | 0.0278 (9) | |
C2 | 0.1504 (2) | 0.4274 (3) | 0.8320 (3) | 0.0262 (8) | |
C3 | 0.1915 (3) | 0.3504 (3) | 0.8700 (3) | 0.0363 (10) | |
H3A | 0.2025 | 0.3072 | 0.8224 | 0.044* | |
C4 | 0.2065 (3) | 0.3940 (3) | 1.0424 (3) | 0.0326 (9) | |
C5 | 0.1350 (2) | 0.4930 (2) | 0.9059 (3) | 0.0240 (8) | |
C6 | 0.1293 (2) | 0.7739 (3) | 0.8822 (3) | 0.0362 (10) | |
H6 | 0.1307 | 0.7310 | 0.9350 | 0.043* | |
C7 | 0.1639 (3) | 0.8606 (3) | 0.9064 (4) | 0.0479 (12) | |
H7 | 0.1875 | 0.8750 | 0.9736 | 0.057* | |
C8 | 0.1626 (3) | 0.9232 (3) | 0.8298 (4) | 0.0507 (13) | |
H8 | 0.1847 | 0.9815 | 0.8448 | 0.061* | |
C9 | 0.1283 (3) | 0.9012 (3) | 0.7289 (4) | 0.0416 (11) | |
C10 | 0.0959 (2) | 0.8115 (3) | 0.7112 (3) | 0.0303 (9) | |
C11 | 0.0644 (2) | 0.7832 (3) | 0.6071 (3) | 0.0315 (9) | |
C12 | 0.0658 (3) | 0.8453 (3) | 0.5253 (4) | 0.0451 (11) | |
C13 | 0.0962 (3) | 0.9367 (4) | 0.5480 (4) | 0.0622 (15) | |
H13 | 0.0954 | 0.9786 | 0.4945 | 0.075* | |
C14 | 0.1256 (3) | 0.9631 (3) | 0.6439 (5) | 0.0610 (15) | |
H14 | 0.1449 | 1.0231 | 0.6559 | 0.073* | |
C15 | 0.0367 (3) | 0.8133 (4) | 0.4259 (4) | 0.0577 (14) | |
H15 | 0.0352 | 0.8526 | 0.3699 | 0.069* | |
C16 | 0.0108 (3) | 0.7253 (4) | 0.4111 (3) | 0.0514 (13) | |
H16 | −0.0064 | 0.7029 | 0.3448 | 0.062* | |
C17 | 0.0099 (2) | 0.6686 (3) | 0.4955 (3) | 0.0384 (10) | |
H17 | −0.0091 | 0.6085 | 0.4839 | 0.046* | |
O5 | 0.3087 (3) | 0.3123 (3) | 0.3401 (3) | 0.0926 (15) | |
H51 | 0.3201 | 0.2551 | 0.3440 | 0.139* | |
H52 | 0.2760 | 0.3253 | 0.2854 | 0.139* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Dy | 0.02842 (15) | 0.01487 (14) | 0.01945 (14) | 0.000 | −0.00135 (10) | 0.000 |
N1 | 0.0310 (18) | 0.0264 (18) | 0.0312 (18) | −0.0013 (14) | 0.0023 (14) | −0.0005 (14) |
N2 | 0.0311 (19) | 0.0288 (19) | 0.0350 (19) | −0.0034 (15) | 0.0049 (15) | −0.0040 (15) |
N3 | 0.060 (2) | 0.0248 (18) | 0.0264 (18) | 0.0105 (17) | −0.0002 (16) | 0.0024 (15) |
N4 | 0.042 (2) | 0.0245 (17) | 0.0195 (16) | 0.0066 (15) | 0.0000 (14) | −0.0021 (13) |
O1 | 0.0425 (16) | 0.0218 (14) | 0.0224 (13) | 0.0096 (13) | −0.0044 (12) | −0.0024 (11) |
O2 | 0.0439 (17) | 0.0310 (15) | 0.0209 (13) | 0.0115 (13) | −0.0003 (12) | 0.0015 (12) |
O3 | 0.0519 (18) | 0.0361 (16) | 0.0211 (14) | 0.0150 (14) | 0.0079 (13) | −0.0015 (12) |
O4 | 0.060 (2) | 0.0342 (17) | 0.0305 (16) | 0.0059 (15) | −0.0095 (14) | 0.0031 (13) |
C1 | 0.036 (2) | 0.021 (2) | 0.025 (2) | −0.0020 (18) | 0.0015 (17) | 0.0014 (17) |
C2 | 0.032 (2) | 0.024 (2) | 0.0217 (19) | 0.0052 (17) | 0.0024 (16) | 0.0012 (16) |
C3 | 0.053 (3) | 0.025 (2) | 0.029 (2) | 0.010 (2) | 0.0043 (19) | −0.0041 (18) |
C4 | 0.039 (2) | 0.028 (2) | 0.028 (2) | −0.0024 (18) | −0.0028 (17) | 0.0038 (17) |
C5 | 0.029 (2) | 0.021 (2) | 0.0211 (19) | −0.0003 (16) | 0.0017 (15) | 0.0000 (15) |
C6 | 0.038 (2) | 0.033 (2) | 0.035 (2) | −0.0083 (19) | 0.0024 (19) | −0.0072 (19) |
C7 | 0.043 (3) | 0.048 (3) | 0.052 (3) | −0.014 (2) | 0.009 (2) | −0.024 (2) |
C8 | 0.051 (3) | 0.034 (3) | 0.068 (3) | −0.016 (2) | 0.013 (3) | −0.019 (3) |
C9 | 0.042 (3) | 0.024 (2) | 0.061 (3) | −0.0076 (19) | 0.014 (2) | −0.006 (2) |
C10 | 0.025 (2) | 0.026 (2) | 0.040 (2) | −0.0013 (16) | 0.0070 (17) | −0.0005 (18) |
C11 | 0.029 (2) | 0.029 (2) | 0.037 (2) | 0.0015 (17) | 0.0071 (18) | 0.0051 (18) |
C12 | 0.044 (3) | 0.041 (3) | 0.052 (3) | −0.003 (2) | 0.012 (2) | 0.014 (2) |
C13 | 0.077 (4) | 0.044 (3) | 0.066 (4) | −0.014 (3) | 0.013 (3) | 0.022 (3) |
C14 | 0.070 (4) | 0.028 (3) | 0.088 (4) | −0.015 (2) | 0.022 (3) | 0.005 (3) |
C15 | 0.067 (4) | 0.066 (4) | 0.038 (3) | −0.010 (3) | 0.007 (2) | 0.024 (3) |
C16 | 0.056 (3) | 0.070 (4) | 0.028 (2) | −0.013 (3) | 0.007 (2) | 0.005 (2) |
C17 | 0.037 (2) | 0.042 (3) | 0.036 (2) | −0.004 (2) | 0.0056 (19) | −0.005 (2) |
O5 | 0.142 (4) | 0.047 (2) | 0.070 (3) | 0.003 (3) | −0.027 (3) | −0.010 (2) |
Dy—O2i | 2.256 (3) | C2—C5 | 1.420 (5) |
Dy—O2 | 2.256 (3) | C3—H3A | 0.9300 |
Dy—O1i | 2.313 (2) | C6—C7 | 1.398 (6) |
Dy—O1 | 2.313 (2) | C6—H6 | 0.9300 |
Dy—N2 | 2.554 (3) | C7—C8 | 1.355 (7) |
Dy—N2i | 2.554 (3) | C7—H7 | 0.9300 |
Dy—N1i | 2.576 (3) | C8—C9 | 1.392 (7) |
Dy—N1 | 2.576 (3) | C8—H8 | 0.9300 |
N1—C17 | 1.331 (5) | C9—C10 | 1.412 (5) |
N1—C11 | 1.360 (5) | C9—C14 | 1.431 (7) |
N2—C6 | 1.324 (5) | C10—C11 | 1.442 (6) |
N2—C10 | 1.358 (5) | C11—C12 | 1.408 (6) |
N3—C3 | 1.335 (5) | C12—C15 | 1.397 (7) |
N3—C4 | 1.364 (5) | C12—C13 | 1.430 (7) |
N3—H3 | 0.8600 | C13—C14 | 1.331 (8) |
N4—C5 | 1.365 (5) | C13—H13 | 0.9300 |
N4—C4 | 1.382 (5) | C14—H14 | 0.9300 |
N4—H4 | 0.8600 | C15—C16 | 1.349 (7) |
O1—C5 | 1.253 (4) | C15—H15 | 0.9300 |
O2—C1 | 1.279 (4) | C16—C17 | 1.386 (6) |
O3—C1 | 1.239 (5) | C16—H16 | 0.9300 |
O4—C4 | 1.239 (5) | C17—H17 | 0.9300 |
C1—C2 | 1.488 (5) | O5—H51 | 0.8483 |
C2—C3 | 1.363 (6) | O5—H52 | 0.8510 |
O2i—Dy—O2 | 88.73 (14) | C5—C2—C1 | 123.4 (3) |
O2i—Dy—O1i | 74.32 (9) | N3—C3—C2 | 126.1 (4) |
O2—Dy—O1i | 81.97 (10) | N3—C3—H3A | 117.0 |
O2i—Dy—O1 | 81.97 (10) | C2—C3—H3A | 117.0 |
O2—Dy—O1 | 74.32 (9) | O4—C4—N3 | 122.5 (4) |
O1i—Dy—O1 | 146.67 (13) | O4—C4—N4 | 121.7 (4) |
O2i—Dy—N2 | 147.90 (10) | N3—C4—N4 | 115.8 (3) |
O2—Dy—N2 | 105.34 (10) | O1—C5—N4 | 117.4 (3) |
O1i—Dy—N2 | 135.32 (10) | O1—C5—C2 | 126.3 (3) |
O1—Dy—N2 | 74.62 (10) | N4—C5—C2 | 116.3 (3) |
O2i—Dy—N2i | 105.34 (10) | N2—C6—C7 | 123.4 (4) |
O2—Dy—N2i | 147.90 (10) | N2—C6—H6 | 118.3 |
O1i—Dy—N2i | 74.62 (10) | C7—C6—H6 | 118.3 |
O1—Dy—N2i | 135.32 (10) | C8—C7—C6 | 118.7 (4) |
N2—Dy—N2i | 77.95 (15) | C8—C7—H7 | 120.6 |
O2i—Dy—N1i | 79.80 (10) | C6—C7—H7 | 120.6 |
O2—Dy—N1i | 148.05 (10) | C7—C8—C9 | 120.6 (4) |
O1i—Dy—N1i | 122.34 (10) | C7—C8—H8 | 119.7 |
O1—Dy—N1i | 74.60 (9) | C9—C8—H8 | 119.7 |
N2—Dy—N1i | 73.07 (10) | C8—C9—C10 | 116.9 (4) |
N2i—Dy—N1i | 63.96 (10) | C8—C9—C14 | 123.8 (4) |
O2i—Dy—N1 | 148.05 (10) | C10—C9—C14 | 119.3 (4) |
O2—Dy—N1 | 79.80 (10) | N2—C10—C9 | 122.7 (4) |
O1i—Dy—N1 | 74.60 (9) | N2—C10—C11 | 118.3 (3) |
O1—Dy—N1 | 122.34 (10) | C9—C10—C11 | 119.0 (4) |
N2—Dy—N1 | 63.96 (10) | N1—C11—C12 | 122.6 (4) |
N2i—Dy—N1 | 73.07 (10) | N1—C11—C10 | 117.7 (3) |
N1i—Dy—N1 | 123.98 (14) | C12—C11—C10 | 119.8 (4) |
C17—N1—C11 | 117.3 (4) | C15—C12—C11 | 117.2 (4) |
C17—N1—Dy | 123.9 (3) | C15—C12—C13 | 123.8 (4) |
C11—N1—Dy | 117.0 (2) | C11—C12—C13 | 118.9 (4) |
C6—N2—C10 | 117.6 (3) | C14—C13—C12 | 121.6 (5) |
C6—N2—Dy | 123.4 (3) | C14—C13—H13 | 119.2 |
C10—N2—Dy | 117.5 (2) | C12—C13—H13 | 119.2 |
C3—N3—C4 | 119.6 (3) | C13—C14—C9 | 121.3 (5) |
C3—N3—H3 | 120.2 | C13—C14—H14 | 119.3 |
C4—N3—H3 | 120.2 | C9—C14—H14 | 119.3 |
C5—N4—C4 | 126.0 (3) | C16—C15—C12 | 120.0 (4) |
C5—N4—H4 | 117.0 | C16—C15—H15 | 120.0 |
C4—N4—H4 | 117.0 | C12—C15—H15 | 120.0 |
C5—O1—Dy | 132.2 (2) | C15—C16—C17 | 119.4 (4) |
C1—O2—Dy | 140.8 (2) | C15—C16—H16 | 120.3 |
O3—C1—O2 | 123.1 (3) | C17—C16—H16 | 120.3 |
O3—C1—C2 | 118.8 (3) | N1—C17—C16 | 123.3 (4) |
O2—C1—C2 | 118.1 (3) | N1—C17—H17 | 118.3 |
C3—C2—C5 | 116.1 (3) | C16—C17—H17 | 118.3 |
C3—C2—C1 | 120.5 (3) | H51—O5—H52 | 112.0 |
O2i—Dy—N1—C17 | −6.9 (4) | C1—C2—C3—N3 | −178.9 (4) |
O2—Dy—N1—C17 | 63.8 (3) | C3—N3—C4—O4 | −178.8 (4) |
O1i—Dy—N1—C17 | −20.6 (3) | C3—N3—C4—N4 | 1.0 (6) |
O1—Dy—N1—C17 | 127.8 (3) | C5—N4—C4—O4 | −176.8 (4) |
N2—Dy—N1—C17 | 176.6 (3) | C5—N4—C4—N3 | 3.4 (6) |
N2i—Dy—N1—C17 | −98.8 (3) | Dy—O1—C5—N4 | −158.4 (3) |
N1i—Dy—N1—C17 | −139.5 (3) | Dy—O1—C5—C2 | 22.1 (6) |
O2i—Dy—N1—C11 | 157.4 (2) | C4—N4—C5—O1 | 174.7 (4) |
O2—Dy—N1—C11 | −132.0 (3) | C4—N4—C5—C2 | −5.7 (6) |
O1i—Dy—N1—C11 | 143.6 (3) | C3—C2—C5—O1 | −177.0 (4) |
O1—Dy—N1—C11 | −68.0 (3) | C1—C2—C5—O1 | 2.6 (6) |
N2—Dy—N1—C11 | −19.2 (3) | C3—C2—C5—N4 | 3.4 (5) |
N2i—Dy—N1—C11 | 65.4 (3) | C1—C2—C5—N4 | −177.0 (3) |
N1i—Dy—N1—C11 | 24.7 (2) | C10—N2—C6—C7 | 2.7 (6) |
O2i—Dy—N2—C6 | 8.4 (4) | Dy—N2—C6—C7 | −162.9 (3) |
O2—Dy—N2—C6 | −104.8 (3) | N2—C6—C7—C8 | −0.4 (7) |
O1i—Dy—N2—C6 | 161.1 (3) | C6—C7—C8—C9 | −0.9 (7) |
O1—Dy—N2—C6 | −36.2 (3) | C7—C8—C9—C10 | −0.2 (7) |
N2i—Dy—N2—C6 | 108.1 (3) | C7—C8—C9—C14 | −179.1 (5) |
N1i—Dy—N2—C6 | 42.0 (3) | C6—N2—C10—C9 | −3.9 (6) |
N1—Dy—N2—C6 | −175.0 (3) | Dy—N2—C10—C9 | 162.6 (3) |
O2i—Dy—N2—C10 | −157.3 (3) | C6—N2—C10—C11 | 174.8 (4) |
O2—Dy—N2—C10 | 89.6 (3) | Dy—N2—C10—C11 | −18.7 (5) |
O1i—Dy—N2—C10 | −4.5 (3) | C8—C9—C10—N2 | 2.7 (6) |
O1—Dy—N2—C10 | 158.1 (3) | C14—C9—C10—N2 | −178.4 (4) |
N2i—Dy—N2—C10 | −57.6 (2) | C8—C9—C10—C11 | −176.0 (4) |
N1i—Dy—N2—C10 | −123.7 (3) | C14—C9—C10—C11 | 2.9 (6) |
N1—Dy—N2—C10 | 19.3 (3) | C17—N1—C11—C12 | 2.9 (6) |
O2i—Dy—O1—C5 | 68.0 (3) | Dy—N1—C11—C12 | −162.4 (3) |
O2—Dy—O1—C5 | −22.9 (3) | C17—N1—C11—C10 | −176.5 (4) |
O1i—Dy—O1—C5 | 23.4 (3) | Dy—N1—C11—C10 | 18.3 (4) |
N2—Dy—O1—C5 | −134.2 (4) | N2—C10—C11—N1 | 0.1 (5) |
N2i—Dy—O1—C5 | 171.7 (3) | C9—C10—C11—N1 | 178.8 (4) |
N1i—Dy—O1—C5 | 149.6 (4) | N2—C10—C11—C12 | −179.3 (4) |
N1—Dy—O1—C5 | −89.6 (3) | C9—C10—C11—C12 | −0.6 (6) |
O2i—Dy—O2—C1 | −72.1 (4) | N1—C11—C12—C15 | −1.3 (7) |
O1i—Dy—O2—C1 | −146.4 (4) | C10—C11—C12—C15 | 178.1 (4) |
O1—Dy—O2—C1 | 9.9 (4) | N1—C11—C12—C13 | 178.6 (4) |
N2—Dy—O2—C1 | 78.7 (4) | C10—C11—C12—C13 | −2.0 (6) |
N2i—Dy—O2—C1 | 170.4 (4) | C15—C12—C13—C14 | −177.8 (6) |
N1i—Dy—O2—C1 | −3.8 (5) | C11—C12—C13—C14 | 2.3 (8) |
N1—Dy—O2—C1 | 137.9 (4) | C12—C13—C14—C9 | 0.1 (9) |
Dy—O2—C1—O3 | −176.1 (3) | C8—C9—C14—C13 | 176.1 (5) |
Dy—O2—C1—C2 | 4.2 (6) | C10—C9—C14—C13 | −2.8 (8) |
O3—C1—C2—C3 | −15.5 (6) | C11—C12—C15—C16 | −1.7 (8) |
O2—C1—C2—C3 | 164.1 (4) | C13—C12—C15—C16 | 178.4 (5) |
O3—C1—C2—C5 | 164.9 (4) | C12—C15—C16—C17 | 2.9 (8) |
O2—C1—C2—C5 | −15.4 (6) | C11—N1—C17—C16 | −1.7 (6) |
C4—N3—C3—C2 | −3.0 (7) | Dy—N1—C17—C16 | 162.5 (3) |
C5—C2—C3—N3 | 0.7 (7) | C15—C16—C17—N1 | −1.2 (8) |
Symmetry code: (i) −x, y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···N3ii | 0.86 | 1.80 | 2.659 (7) | 174 |
N4—H4···O3iii | 0.86 | 2.01 | 2.867 (4) | 178 |
N4—H4···O2iii | 0.86 | 2.62 | 3.183 (4) | 124 |
O5—H51···O3iv | 0.85 | 2.15 | 2.993 (5) | 175 |
O5—H52···O4v | 0.85 | 2.15 | 2.960 (5) | 160 |
Symmetry codes: (ii) −x+1/2, −y+1/2, −z+2; (iii) x, −y+1, z+1/2; (iv) −x+1/2, −y+1/2, −z+1; (v) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | [Dy(C5H2.5N2O4)2(C12H8N2)2]·2H2O |
Mr | 868.12 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 295 |
a, b, c (Å) | 17.143 (2), 14.4470 (17), 13.2211 (16) |
β (°) | 100.613 (2) |
V (Å3) | 3218.3 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.40 |
Crystal size (mm) | 0.10 × 0.03 × 0.02 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.796, 0.954 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11116, 2842, 2619 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.068, 1.06 |
No. of reflections | 2842 |
No. of parameters | 240 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.93, −1.22 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Dy—O2 | 2.256 (3) | Dy—N2 | 2.554 (3) |
Dy—O1 | 2.313 (2) | Dy—N1 | 2.576 (3) |
O2i—Dy—O2 | 88.73 (14) | N2—Dy—N2i | 77.95 (15) |
O2—Dy—O1i | 81.97 (10) | O2—Dy—N1i | 148.05 (10) |
O2—Dy—O1 | 74.32 (9) | O1—Dy—N1i | 74.60 (9) |
O1i—Dy—O1 | 146.67 (13) | N2—Dy—N1i | 73.07 (10) |
O2i—Dy—N2 | 147.90 (10) | O2—Dy—N1 | 79.80 (10) |
O2—Dy—N2 | 105.34 (10) | O1—Dy—N1 | 122.34 (10) |
O1i—Dy—N2 | 135.32 (10) | N2—Dy—N1 | 63.96 (10) |
O1—Dy—N2 | 74.62 (10) | N1i—Dy—N1 | 123.98 (14) |
Symmetry code: (i) −x, y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···N3ii | 0.86 | 1.80 | 2.659 (7) | 174.2 |
N4—H4···O3iii | 0.86 | 2.01 | 2.867 (4) | 177.5 |
N4—H4···O2iii | 0.86 | 2.62 | 3.183 (4) | 124.4 |
O5—H51···O3iv | 0.85 | 2.15 | 2.993 (5) | 175.4 |
O5—H52···O4v | 0.85 | 2.15 | 2.960 (5) | 159.8 |
Symmetry codes: (ii) −x+1/2, −y+1/2, −z+2; (iii) x, −y+1, z+1/2; (iv) −x+1/2, −y+1/2, −z+1; (v) x, y, z−1. |
Acknowledgements
The authors are grateful for financial support from the Guangxi Natural Science Foundation (grant No. 0991008) and the Scientific Research Foundation for Returned Overseas Chinese Scholars, State Education Ministry, China (grant No. [2006]331).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
2,4-Dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid has been extensively used in the preparation of robust networks or some porous coordination polymers because of its versatile coordination modes. For further investigation of its coordination behavior to lanthanide(III) ions, we report here a new DyIII complex of 2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylic acid, which turned out to be isostructural with the analogues EuIII, TbIII, YbIII (2004a,b), ErIII (Xing et al., 2008a) and YIII, GdIII (Xiong et al., 2008a,b) complexes.
In the title complex, (I), the DyIII ion is located on a twofold rotation axis and coordinated in square-antiprismatic geometry completed by four N atoms from two chelating phenanthroline molecules, four O atoms from two chelating 4-oxido-2-oxo-2,3-dihydropyrimidin-1-ium-5-carboxylate(1.5-) anions. The distances of Dy—O are 2.256 (3) and 2.313 (2)Å, and those of Dy—N are 2.554 (3) and 2.576 (3)Å. The averge distance of Dy—O is 2.285Å, which is much shorter than that of Dy—N (2.565Å). The dihedral angle between two phen molecules is 37.726°. As shown in Table 2 and Fig. 2, each coordination unit [Dy(C5H3N2O4)(C5H2N2O4)(C12H8N2)2)] interacts with another four via intermolecular N—H···O and N—H···N hydrogen bonds. Each lattice water molecule links two coordination units mentioned above via O—H···O hydrogen bonds. As a result, these hydrogen bonds link the title complex units and lattice water molecules into a three-dimensional supramolecular network as shown in the packing diagram (Fig. 2). The H atom involved in an N—H···N hydrogen bond is disordered around a twofold rotation axis with half occupancy.