organic compounds
2-[N-(2,4-Difluorophenyl)carbamoyl]-3,4,5,6-tetrafluorobenzoic acid
aCollege of Pharmacy, The University of Arizona, 1295 N. Martin Avenue, Tucson, AZ 85721, USA, and bDepartment of Chemistry and Biochemistry, The University of Arizona, 1306 E. University Boulevard, Tucson, AZ 85721, USA
*Correspondence e-mail: guod@pharmacy.arizona.edu
The title compound, C14H5F6NO3, was synthesized by condensation of tetrafluorophthalic anhydride and 2,4-difluoroaniline. It was then recrystallized from hexane to give a nonmerohedral twin with two crystallographically unique molecules in the The refined twin fraction is 0.460 (3). Torsional differences between the aryl rings and the central amide group account for the presence of two unique molecules. The compound packs as double tapes formed by O—H⋯O and N—H⋯O hydrogen-bonding interactions between each unique molecule and its symmetry equivalents.
Related literature
For the synthesis of a related structure, see: Collin et al. (2001). For antitumor effects of thalidomide analogs, see: Ng et al. (2004).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXTL and local programs.
Supporting information
https://doi.org/10.1107/S1600536809038306/bt5063sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809038306/bt5063Isup2.hkl
Compound (I) was synthesized by coupling tetraflurophthalic anhydride (1 g, 4.54 mmol) and 2,4-difluoroaniline (0.59 g, 4.54 mmol) using 4-dimethylaminopyridine (56 mg, 0.454 mmol) as the catalyst and dry dichloromethane (10 ml) as the solvent. The mixture was stirred at ambient temperature for 72 h. After evaporation of the solvent, the reaction mixture was partitioned between ethyl acetate and 2 N HCl. The aqueous phase was then extracted twice more with ethyl acetate. The combined extracts were evaporated to a solid in vacuo. The solid was treated with diethyl ether at room temperature and the undissolved residue was discarded. The remaining solution was evaporated to give a white powder, which was recrystallized from hexane.
All H-atoms were placed geometrically and refined with Uiso(H) = 1.2Ueq(X) (X = C, H, O) and fixed distances of: O–H, 0.84 Å; N–H, 0.88 Å; C–H, 0.95 Å. The structure was refined as a non-merohedral twin (twin law: -1 0 0 / 0 -1 0 / -1 0.31 1). The fraction of the minor twin domain was 0.460 (3).
Analogs of thalidomide have demonstrated promising anti-cancer activity (Ng et al., 2004). Inhibition of the angiogenesis activity of 2-(2,4-difluorophenyl)-4,5,6,7-tetrafluoroisoindoline-1,3-dione led us to synthesize and test the activity of its degradation product, 2-(2,4-difluorophenylcarbamoyl)-3,4,5,6-tetrafluorobenzoic acid, (I). In the course of doing so we determined its crystal structure.
Compound (I) was recrystallized from hexane to yield, concomitantly, small needle and prism-like crystals. Both crystal morphologies have the same
parameters and data were collected on a prism crystal. Although the crystal was reasonably large the diffraction was phenomenally weak. With 60 second exposures using Cu radiation data could only be observed up to a resolution of 1 Å; the dataset was truncated at this resolution. The diffraction pattern is a non-merohedral twin with a refined twin fraction ration of 0.460 (3). A room temperature redetermination of the using a fresh crystal, showed that was still present and does not result from flash-cooling to 100 K.The structure features two crystallographically independent molecules in the
The structural discussion is limited to molecule A (atoms F1 > C14) with equivalent results for molecule B (F51 > C14) presented in square brackets. The is shown in Figure 1. Figure 2 shows an overlay of both molecules,formed by overlaying the central amide group.Molecular dimensions are unexceptional. The plane of the more highly-substituted aryl ring is rotated by 69.41 (5)° [69.64 (4)°] from the amide group, and the carboxylic acid group is rotated by 58.70 (2)° [61.10 (3)°] from the aryl ring. The plane of the second aryl ring is rotated by 70.25 (4)° [66.54 (4)°] from the amide group. As can be see from Figure 3 and from the direction of rotation is different for each molecule, most easily appreciated by considering the torsion angle N1–C1–C2–C3 - 49.0 (8)° [48.5 (10)°] (similar magnitude, opposite direction).As shown in Figures 3 and 4 the compound packs as a double tape structure with each crystallographically unique molecule hydrogen-bonded to its symmetry equivalents via O–H···O and N–H···O hydrogen bonding interactions. Each tape runs parallel to the a axis.
For the synthesis of a related structure, see Collin et al. (2001). For antitumor effects of thalidomide analogs, see Ng et al. (2004).
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Version 2.2; Macrae et al., 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and local programs.C14H5F6NO3 | Z = 4 |
Mr = 349.19 | F(000) = 696 |
Triclinic, P1 | Dx = 1.795 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54178 Å |
a = 7.5293 (4) Å | Cell parameters from 617 reflections |
b = 7.6795 (5) Å | θ = 3.7–56.9° |
c = 24.1969 (15) Å | µ = 1.65 mm−1 |
α = 89.809 (5)° | T = 100 K |
β = 82.747 (4)° | Prism, colorless |
γ = 68.712 (4)° | 0.27 × 0.19 × 0.09 mm |
V = 1291.83 (13) Å3 |
Bruker Kappa APEXII DUO CCD diffractometer | 3296 independent reflections |
Radiation source: microsource | 2467 reflections with I > 2σ(I) |
Silicon monochromator | Rint = 0.074 |
φ and ω scans | θmax = 58.5°, θmin = 1.8° |
Absorption correction: multi-scan (TWINABS; Sheldrick, 1996) | h = −8→8 |
Tmin = 0.664, Tmax = 0.868 | k = −8→8 |
7781 measured reflections | l = 0→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.067 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.182 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.1222P)2] where P = (Fo2 + 2Fc2)/3 |
3296 reflections | (Δ/σ)max < 0.001 |
434 parameters | Δρmax = 0.40 e Å−3 |
0 restraints | Δρmin = −0.43 e Å−3 |
C14H5F6NO3 | γ = 68.712 (4)° |
Mr = 349.19 | V = 1291.83 (13) Å3 |
Triclinic, P1 | Z = 4 |
a = 7.5293 (4) Å | Cu Kα radiation |
b = 7.6795 (5) Å | µ = 1.65 mm−1 |
c = 24.1969 (15) Å | T = 100 K |
α = 89.809 (5)° | 0.27 × 0.19 × 0.09 mm |
β = 82.747 (4)° |
Bruker Kappa APEXII DUO CCD diffractometer | 3296 independent reflections |
Absorption correction: multi-scan (TWINABS; Sheldrick, 1996) | 2467 reflections with I > 2σ(I) |
Tmin = 0.664, Tmax = 0.868 | Rint = 0.074 |
7781 measured reflections | θmax = 58.5° |
R[F2 > 2σ(F2)] = 0.067 | 0 restraints |
wR(F2) = 0.182 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.40 e Å−3 |
3296 reflections | Δρmin = −0.43 e Å−3 |
434 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.6312 (6) | 0.7940 (5) | 0.07802 (17) | 0.0314 (10) | |
F2 | 0.5202 (6) | 0.7903 (6) | 0.18695 (17) | 0.0342 (11) | |
F3 | 0.5293 (7) | 0.4660 (6) | 0.23442 (17) | 0.0380 (12) | |
F4 | 0.6469 (7) | 0.1469 (6) | 0.17134 (17) | 0.0368 (11) | |
F5 | 0.8026 (6) | 0.3185 (6) | −0.11126 (18) | 0.0310 (10) | |
F6 | 0.9832 (7) | 0.7035 (7) | −0.23925 (18) | 0.0441 (13) | |
O1 | 0.9457 (6) | 0.3317 (6) | −0.0108 (2) | 0.0233 (11) | |
O2 | 0.6865 (7) | 0.1123 (7) | 0.01592 (19) | 0.0252 (12) | |
O3 | 0.9119 (7) | −0.0116 (6) | 0.0722 (2) | 0.0279 (12) | |
H3 | 0.9411 | −0.1078 | 0.0513 | 0.034* | |
N1 | 0.6934 (8) | 0.5969 (8) | −0.0258 (2) | 0.0208 (13) | |
H1 | 0.5782 | 0.6737 | −0.0115 | 0.025* | |
C1 | 0.7927 (10) | 0.4594 (10) | 0.0057 (3) | 0.0221 (17) | |
C2 | 0.7033 (10) | 0.4683 (10) | 0.0659 (3) | 0.0233 (17) | |
C3 | 0.6390 (10) | 0.6307 (10) | 0.0997 (3) | 0.0252 (17) | |
C4 | 0.5817 (10) | 0.6302 (10) | 0.1557 (3) | 0.0257 (17) | |
C5 | 0.5853 (11) | 0.4681 (11) | 0.1803 (3) | 0.0270 (18) | |
C6 | 0.6523 (11) | 0.3034 (10) | 0.1465 (3) | 0.0289 (19) | |
C7 | 0.7083 (10) | 0.3010 (10) | 0.0908 (3) | 0.0210 (16) | |
C8 | 0.7685 (10) | 0.1238 (10) | 0.0551 (3) | 0.0229 (16) | |
C9 | 0.7661 (10) | 0.6233 (10) | −0.0807 (3) | 0.0216 (16) | |
C10 | 0.8250 (11) | 0.4836 (10) | −0.1232 (3) | 0.0285 (18) | |
C11 | 0.8983 (11) | 0.5061 (10) | −0.1755 (3) | 0.0288 (18) | |
H11 | 0.9396 | 0.4074 | −0.2032 | 0.035* | |
C12 | 0.9107 (11) | 0.6748 (12) | −0.1869 (3) | 0.032 (2) | |
C13 | 0.8517 (11) | 0.8235 (11) | −0.1472 (3) | 0.0289 (18) | |
H13 | 0.8582 | 0.9414 | −0.1566 | 0.035* | |
C14 | 0.7839 (11) | 0.7933 (11) | −0.0938 (3) | 0.0285 (18) | |
H14 | 0.7487 | 0.8899 | −0.0655 | 0.034* | |
F51 | 0.7042 (6) | 0.2634 (6) | 0.41888 (17) | 0.0305 (10) | |
F52 | 0.6881 (7) | 0.2199 (6) | 0.31022 (18) | 0.0402 (12) | |
F53 | 0.7306 (6) | −0.1187 (6) | 0.26531 (18) | 0.0383 (11) | |
F54 | 0.7893 (7) | −0.4145 (6) | 0.33004 (18) | 0.0350 (11) | |
F55 | 0.6962 (6) | −0.1608 (5) | 0.60603 (17) | 0.0311 (11) | |
F56 | 0.8200 (6) | 0.2169 (6) | 0.73646 (18) | 0.0413 (12) | |
O51 | 0.9354 (7) | −0.1677 (7) | 0.5081 (2) | 0.0264 (12) | |
O52 | 0.6925 (7) | −0.3957 (7) | 0.4849 (2) | 0.0259 (12) | |
O53 | 0.9737 (7) | −0.5342 (6) | 0.4286 (2) | 0.0279 (12) | |
H53 | 0.9875 | −0.6255 | 0.4491 | 0.034* | |
N51 | 0.6738 (9) | 0.1005 (8) | 0.5249 (2) | 0.0251 (14) | |
H51 | 0.5713 | 0.1778 | 0.5119 | 0.030* | |
C51 | 0.7952 (11) | −0.0447 (10) | 0.4919 (3) | 0.0245 (17) | |
C52 | 0.7609 (10) | −0.0563 (10) | 0.4324 (3) | 0.0253 (17) | |
C53 | 0.7284 (11) | 0.0938 (10) | 0.3988 (3) | 0.0269 (17) | |
C54 | 0.7213 (11) | 0.0727 (10) | 0.3424 (3) | 0.0270 (18) | |
C55 | 0.7409 (11) | −0.1006 (11) | 0.3196 (3) | 0.0268 (18) | |
C56 | 0.7748 (10) | −0.2496 (10) | 0.3531 (3) | 0.0236 (17) | |
C57 | 0.7811 (10) | −0.2303 (10) | 0.4091 (3) | 0.0221 (17) | |
C58 | 0.8084 (11) | −0.3979 (10) | 0.4460 (3) | 0.0246 (17) | |
C59 | 0.7037 (11) | 0.1344 (10) | 0.5794 (3) | 0.0272 (18) | |
C60 | 0.7205 (10) | 0.0006 (10) | 0.6193 (3) | 0.0252 (17) | |
C61 | 0.7593 (11) | 0.0240 (11) | 0.6723 (3) | 0.0307 (18) | |
H61 | 0.7755 | −0.0707 | 0.6986 | 0.037* | |
C62 | 0.7733 (12) | 0.1938 (11) | 0.6849 (3) | 0.032 (2) | |
C63 | 0.7495 (11) | 0.3315 (11) | 0.6487 (3) | 0.0299 (19) | |
H63 | 0.7575 | 0.4470 | 0.6595 | 0.036* | |
C64 | 0.7138 (11) | 0.3034 (11) | 0.5961 (3) | 0.0300 (18) | |
H64 | 0.6955 | 0.4007 | 0.5706 | 0.036* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.040 (3) | 0.024 (2) | 0.032 (2) | −0.014 (2) | −0.003 (2) | −0.0027 (19) |
F2 | 0.040 (3) | 0.029 (2) | 0.032 (2) | −0.010 (2) | −0.005 (2) | −0.006 (2) |
F3 | 0.047 (3) | 0.033 (3) | 0.022 (2) | −0.002 (2) | −0.001 (2) | 0.0010 (19) |
F4 | 0.052 (3) | 0.021 (2) | 0.032 (2) | −0.008 (2) | −0.002 (2) | 0.0045 (19) |
F5 | 0.029 (2) | 0.027 (2) | 0.038 (3) | −0.010 (2) | −0.013 (2) | 0.0016 (19) |
F6 | 0.052 (3) | 0.051 (3) | 0.023 (2) | −0.016 (2) | 0.006 (2) | 0.007 (2) |
O1 | 0.015 (3) | 0.018 (3) | 0.034 (3) | −0.002 (2) | −0.005 (2) | −0.006 (2) |
O2 | 0.024 (3) | 0.027 (3) | 0.028 (3) | −0.013 (2) | −0.003 (2) | −0.003 (2) |
O3 | 0.035 (3) | 0.014 (3) | 0.033 (3) | −0.004 (2) | −0.015 (2) | −0.001 (2) |
N1 | 0.005 (3) | 0.024 (3) | 0.031 (3) | −0.001 (2) | −0.009 (3) | 0.005 (3) |
C1 | 0.027 (4) | 0.019 (4) | 0.030 (4) | −0.016 (4) | −0.011 (3) | −0.001 (3) |
C2 | 0.019 (4) | 0.033 (4) | 0.029 (4) | −0.020 (3) | −0.009 (3) | 0.001 (3) |
C3 | 0.016 (4) | 0.018 (4) | 0.038 (4) | −0.003 (3) | −0.005 (4) | 0.001 (3) |
C4 | 0.027 (4) | 0.029 (4) | 0.025 (4) | −0.013 (3) | −0.007 (3) | −0.007 (3) |
C5 | 0.024 (4) | 0.025 (4) | 0.029 (4) | −0.004 (3) | −0.009 (3) | 0.000 (3) |
C6 | 0.030 (4) | 0.022 (4) | 0.036 (5) | −0.009 (4) | −0.009 (4) | 0.015 (4) |
C7 | 0.016 (4) | 0.024 (4) | 0.024 (4) | −0.008 (3) | −0.006 (3) | 0.004 (3) |
C8 | 0.023 (4) | 0.028 (4) | 0.021 (4) | −0.014 (3) | −0.001 (3) | 0.002 (3) |
C9 | 0.015 (4) | 0.026 (4) | 0.022 (4) | −0.004 (3) | −0.008 (3) | 0.002 (3) |
C10 | 0.031 (4) | 0.026 (4) | 0.031 (4) | −0.012 (4) | −0.005 (4) | 0.005 (3) |
C11 | 0.031 (4) | 0.018 (4) | 0.031 (4) | −0.002 (3) | −0.004 (4) | −0.005 (3) |
C12 | 0.024 (4) | 0.044 (5) | 0.025 (4) | −0.009 (4) | −0.003 (3) | 0.003 (4) |
C13 | 0.027 (4) | 0.024 (4) | 0.038 (5) | −0.009 (3) | −0.011 (4) | 0.012 (4) |
C14 | 0.032 (4) | 0.032 (4) | 0.028 (4) | −0.015 (4) | −0.014 (3) | 0.006 (4) |
F51 | 0.035 (2) | 0.022 (2) | 0.036 (2) | −0.0108 (19) | −0.010 (2) | 0.0055 (19) |
F52 | 0.052 (3) | 0.035 (3) | 0.034 (3) | −0.015 (2) | −0.011 (2) | 0.013 (2) |
F53 | 0.047 (3) | 0.042 (3) | 0.027 (2) | −0.017 (2) | −0.007 (2) | 0.005 (2) |
F54 | 0.042 (3) | 0.026 (2) | 0.035 (3) | −0.007 (2) | −0.011 (2) | −0.005 (2) |
F55 | 0.036 (2) | 0.018 (2) | 0.039 (3) | −0.010 (2) | 0.000 (2) | 0.0043 (19) |
F56 | 0.036 (3) | 0.051 (3) | 0.036 (3) | −0.015 (2) | −0.007 (2) | −0.008 (2) |
O51 | 0.031 (3) | 0.019 (3) | 0.031 (3) | −0.011 (3) | −0.006 (2) | 0.001 (2) |
O52 | 0.024 (3) | 0.021 (3) | 0.033 (3) | −0.008 (2) | −0.001 (3) | 0.005 (2) |
O53 | 0.023 (3) | 0.020 (3) | 0.041 (3) | −0.008 (2) | −0.004 (2) | 0.009 (2) |
N51 | 0.024 (3) | 0.022 (3) | 0.027 (3) | −0.005 (3) | −0.009 (3) | 0.002 (3) |
C51 | 0.029 (4) | 0.024 (4) | 0.028 (4) | −0.016 (4) | −0.009 (4) | 0.010 (3) |
C52 | 0.019 (4) | 0.026 (4) | 0.030 (4) | −0.006 (3) | −0.005 (3) | −0.002 (3) |
C53 | 0.021 (4) | 0.024 (4) | 0.036 (5) | −0.008 (3) | −0.005 (4) | 0.005 (4) |
C54 | 0.022 (4) | 0.024 (4) | 0.033 (4) | −0.007 (3) | −0.005 (3) | 0.018 (4) |
C55 | 0.018 (4) | 0.033 (5) | 0.025 (4) | −0.002 (3) | −0.006 (3) | 0.003 (4) |
C56 | 0.018 (4) | 0.026 (4) | 0.032 (4) | −0.013 (3) | −0.007 (3) | −0.001 (4) |
C57 | 0.014 (4) | 0.022 (4) | 0.028 (4) | −0.005 (3) | −0.003 (3) | 0.006 (3) |
C58 | 0.021 (4) | 0.014 (4) | 0.038 (5) | −0.003 (3) | −0.011 (4) | −0.001 (3) |
C59 | 0.024 (4) | 0.027 (4) | 0.026 (4) | −0.004 (3) | −0.003 (3) | 0.008 (3) |
C60 | 0.015 (4) | 0.018 (4) | 0.041 (5) | −0.004 (3) | −0.005 (3) | −0.001 (3) |
C61 | 0.031 (4) | 0.028 (4) | 0.028 (4) | −0.005 (3) | −0.004 (3) | 0.003 (3) |
C62 | 0.033 (5) | 0.029 (5) | 0.025 (4) | −0.001 (4) | −0.003 (4) | −0.003 (4) |
C63 | 0.032 (5) | 0.026 (4) | 0.033 (4) | −0.011 (4) | −0.005 (4) | −0.003 (4) |
C64 | 0.029 (4) | 0.025 (4) | 0.036 (5) | −0.010 (4) | −0.004 (4) | 0.006 (4) |
F1—C3 | 1.342 (8) | F51—C53 | 1.332 (8) |
F2—C4 | 1.342 (8) | F52—C54 | 1.336 (8) |
F3—C5 | 1.326 (8) | F53—C55 | 1.337 (9) |
F4—C6 | 1.353 (8) | F54—C56 | 1.348 (8) |
F5—C10 | 1.364 (8) | F55—C60 | 1.361 (8) |
F6—C12 | 1.365 (9) | F56—C62 | 1.367 (9) |
O1—C1 | 1.230 (9) | O51—C51 | 1.240 (8) |
O2—C8 | 1.214 (8) | O52—C58 | 1.195 (9) |
O3—H3 | 0.840 | O53—H53 | 0.840 |
O3—C8 | 1.309 (8) | O53—C58 | 1.321 (9) |
N1—H1 | 0.880 | N51—H51 | 0.880 |
N1—C1 | 1.349 (9) | N51—C51 | 1.341 (10) |
N1—C9 | 1.416 (9) | N51—C59 | 1.405 (10) |
C1—C2 | 1.517 (10) | C51—C52 | 1.504 (10) |
C2—C3 | 1.388 (10) | C52—C53 | 1.375 (11) |
C2—C7 | 1.408 (10) | C52—C57 | 1.401 (10) |
C3—C4 | 1.369 (10) | C53—C54 | 1.384 (11) |
C4—C5 | 1.371 (11) | C54—C55 | 1.393 (11) |
C5—C6 | 1.400 (11) | C55—C56 | 1.366 (11) |
C6—C7 | 1.359 (11) | C56—C57 | 1.371 (11) |
C7—C8 | 1.506 (10) | C57—C58 | 1.532 (10) |
C9—C10 | 1.396 (11) | C59—C60 | 1.390 (10) |
C9—C14 | 1.391 (10) | C59—C64 | 1.391 (11) |
C10—C11 | 1.351 (10) | C60—C61 | 1.378 (11) |
C11—H11 | 0.950 | C61—H61 | 0.950 |
C11—C12 | 1.357 (11) | C61—C62 | 1.383 (11) |
C12—C13 | 1.399 (11) | C62—C63 | 1.348 (11) |
C13—H13 | 0.950 | C63—H63 | 0.950 |
C13—C14 | 1.378 (11) | C63—C64 | 1.366 (11) |
C14—H14 | 0.950 | C64—H64 | 0.950 |
H3—O3—C8 | 109.5 | H53—O53—C58 | 109.5 |
H1—N1—C1 | 118.5 | H51—N51—C51 | 118.6 |
H1—N1—C9 | 118.5 | H51—N51—C59 | 118.6 |
C1—N1—C9 | 123.0 (6) | C51—N51—C59 | 122.7 (6) |
O1—C1—N1 | 125.2 (7) | O51—C51—N51 | 122.9 (6) |
O1—C1—C2 | 119.4 (6) | O51—C51—C52 | 118.8 (7) |
N1—C1—C2 | 115.4 (6) | N51—C51—C52 | 118.2 (6) |
C1—C2—C3 | 122.6 (6) | C51—C52—C53 | 122.1 (7) |
C1—C2—C7 | 118.8 (6) | C51—C52—C57 | 118.6 (6) |
C3—C2—C7 | 118.1 (7) | C53—C52—C57 | 119.0 (7) |
F1—C3—C2 | 120.4 (7) | F51—C53—C52 | 121.6 (6) |
F1—C3—C4 | 118.0 (6) | F51—C53—C54 | 117.7 (7) |
C2—C3—C4 | 121.6 (7) | C52—C53—C54 | 120.7 (7) |
F2—C4—C3 | 119.8 (6) | F52—C54—C53 | 120.1 (7) |
F2—C4—C5 | 119.4 (6) | F52—C54—C55 | 119.9 (7) |
C3—C4—C5 | 120.8 (7) | C53—C54—C55 | 119.9 (7) |
F3—C5—C4 | 121.4 (7) | F53—C55—C54 | 119.4 (7) |
F3—C5—C6 | 120.7 (7) | F53—C55—C56 | 121.4 (7) |
C4—C5—C6 | 117.9 (7) | C54—C55—C56 | 119.1 (7) |
F4—C6—C5 | 116.7 (7) | F54—C56—C55 | 117.6 (6) |
F4—C6—C7 | 120.9 (7) | F54—C56—C57 | 120.8 (7) |
C5—C6—C7 | 122.3 (7) | C55—C56—C57 | 121.5 (7) |
C2—C7—C6 | 119.4 (7) | C52—C57—C56 | 119.8 (7) |
C2—C7—C8 | 119.5 (6) | C52—C57—C58 | 120.1 (6) |
C6—C7—C8 | 121.0 (6) | C56—C57—C58 | 120.1 (7) |
O2—C8—O3 | 125.7 (7) | O52—C58—O53 | 127.9 (7) |
O2—C8—C7 | 122.0 (6) | O52—C58—C57 | 122.0 (7) |
O3—C8—C7 | 112.3 (6) | O53—C58—C57 | 110.1 (7) |
N1—C9—C10 | 122.7 (6) | N51—C59—C60 | 120.9 (7) |
N1—C9—C14 | 119.7 (6) | N51—C59—C64 | 121.8 (7) |
C10—C9—C14 | 117.5 (7) | C60—C59—C64 | 117.2 (7) |
F5—C10—C9 | 118.0 (6) | F55—C60—C59 | 119.2 (6) |
F5—C10—C11 | 118.8 (6) | F55—C60—C61 | 117.9 (7) |
C9—C10—C11 | 123.2 (7) | C59—C60—C61 | 122.9 (7) |
C10—C11—H11 | 121.2 | C60—C61—H61 | 122.0 |
C10—C11—C12 | 117.6 (7) | C60—C61—C62 | 116.0 (7) |
H11—C11—C12 | 121.2 | H61—C61—C62 | 122.0 |
F6—C12—C11 | 119.5 (7) | F56—C62—C61 | 117.0 (7) |
F6—C12—C13 | 117.6 (7) | F56—C62—C63 | 119.6 (7) |
C11—C12—C13 | 122.9 (7) | C61—C62—C63 | 123.4 (7) |
C12—C13—H13 | 121.1 | C62—C63—H63 | 120.4 |
C12—C13—C14 | 117.8 (7) | C62—C63—C64 | 119.3 (7) |
H13—C13—C14 | 121.1 | H63—C63—C64 | 120.4 |
C9—C14—C13 | 120.9 (7) | C59—C64—C63 | 121.0 (7) |
C9—C14—H14 | 119.6 | C59—C64—H64 | 119.5 |
C13—C14—H14 | 119.6 | C63—C64—H64 | 119.5 |
C9—N1—C1—O1 | −7.7 (10) | C59—N51—C51—O51 | 5.3 (11) |
C9—N1—C1—C2 | 172.3 (6) | C59—N51—C51—C52 | −173.6 (6) |
O1—C1—C2—C3 | 131.0 (7) | O51—C51—C52—C53 | −130.4 (8) |
O1—C1—C2—C7 | −40.5 (9) | O51—C51—C52—C57 | 43.4 (10) |
N1—C1—C2—C3 | −49.0 (8) | N51—C51—C52—C53 | 48.5 (10) |
N1—C1—C2—C7 | 139.5 (6) | N51—C51—C52—C57 | −137.7 (7) |
C1—C2—C3—F1 | 8.5 (10) | C51—C52—C53—F51 | −7.6 (11) |
C1—C2—C3—C4 | −171.5 (7) | C51—C52—C53—C54 | 171.8 (7) |
C7—C2—C3—F1 | −180.0 (6) | C57—C52—C53—F51 | 178.6 (6) |
C7—C2—C3—C4 | 0.0 (11) | C57—C52—C53—C54 | −2.0 (12) |
F1—C3—C4—F2 | 0.0 (10) | F51—C53—C54—F52 | −1.1 (11) |
F1—C3—C4—C5 | 179.7 (6) | F51—C53—C54—C55 | −178.4 (6) |
C2—C3—C4—F2 | −180.0 (6) | C52—C53—C54—F52 | 179.5 (7) |
C2—C3—C4—C5 | −0.3 (11) | C52—C53—C54—C55 | 2.2 (12) |
F2—C4—C5—F3 | 0.0 (11) | F52—C54—C55—F53 | 1.6 (11) |
F2—C4—C5—C6 | −179.3 (6) | F52—C54—C55—C56 | −180.0 (7) |
C3—C4—C5—F3 | −179.7 (6) | C53—C54—C55—F53 | 178.9 (7) |
C3—C4—C5—C6 | 1.1 (11) | C53—C54—C55—C56 | −2.7 (11) |
F3—C5—C6—F4 | 3.4 (10) | F53—C55—C56—F54 | −2.8 (11) |
F3—C5—C6—C7 | 179.1 (7) | F53—C55—C56—C57 | −178.5 (6) |
C4—C5—C6—F4 | −177.4 (6) | C54—C55—C56—F54 | 178.8 (6) |
C4—C5—C6—C7 | −1.6 (11) | C54—C55—C56—C57 | 3.1 (11) |
F4—C6—C7—C2 | 176.9 (6) | F54—C56—C57—C52 | −178.4 (6) |
F4—C6—C7—C8 | −0.8 (11) | F54—C56—C57—C58 | 1.1 (10) |
C5—C6—C7—C2 | 1.4 (11) | C55—C56—C57—C52 | −2.9 (11) |
C5—C6—C7—C8 | −176.3 (7) | C55—C56—C57—C58 | 176.6 (7) |
C1—C2—C7—C6 | 171.3 (6) | C51—C52—C57—C56 | −171.7 (6) |
C1—C2—C7—C8 | −11.0 (9) | C51—C52—C57—C58 | 8.7 (10) |
C3—C2—C7—C6 | −0.6 (10) | C53—C52—C57—C56 | 2.3 (11) |
C3—C2—C7—C8 | 177.2 (6) | C53—C52—C57—C58 | −177.2 (7) |
C2—C7—C8—O2 | −57.0 (9) | C52—C57—C58—O52 | 59.1 (10) |
C2—C7—C8—O3 | 124.7 (7) | C52—C57—C58—O53 | −119.9 (7) |
C6—C7—C8—O2 | 120.8 (8) | C56—C57—C58—O52 | −120.4 (8) |
C6—C7—C8—O3 | −57.6 (9) | C56—C57—C58—O53 | 60.5 (9) |
C1—N1—C9—C10 | 57.0 (9) | C51—N51—C59—C60 | −57.9 (10) |
C1—N1—C9—C14 | −121.9 (7) | C51—N51—C59—C64 | 123.5 (8) |
N1—C9—C10—F5 | 3.1 (10) | N51—C59—C60—F55 | −3.9 (11) |
N1—C9—C10—C11 | −178.6 (7) | N51—C59—C60—C61 | 176.7 (7) |
C14—C9—C10—F5 | −178.0 (6) | C64—C59—C60—F55 | 174.8 (6) |
C14—C9—C10—C11 | 0.3 (11) | C64—C59—C60—C61 | −4.6 (11) |
F5—C10—C11—C12 | 177.0 (6) | F55—C60—C61—C62 | −176.8 (6) |
C9—C10—C11—C12 | −1.3 (11) | C59—C60—C61—C62 | 2.6 (11) |
C10—C11—C12—F6 | −179.7 (7) | C60—C61—C62—F56 | −177.2 (7) |
C10—C11—C12—C13 | 0.1 (11) | C60—C61—C62—C63 | 0.6 (12) |
F6—C12—C13—C14 | −178.1 (6) | F56—C62—C63—C64 | 176.3 (7) |
C11—C12—C13—C14 | 2.1 (11) | C61—C62—C63—C64 | −1.5 (12) |
C12—C13—C14—C9 | −3.1 (10) | C62—C63—C64—C59 | −0.7 (12) |
N1—C9—C14—C13 | −179.1 (6) | N51—C59—C64—C63 | −177.7 (7) |
C10—C9—C14—C13 | 1.9 (10) | C60—C59—C64—C63 | 3.6 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O1i | 0.84 | 1.84 | 2.666 (6) | 168 |
N1—H1···O2ii | 0.88 | 2.09 | 2.902 (7) | 154 |
O53—H53···O51iii | 0.84 | 1.84 | 2.675 (6) | 170 |
N51—H51···O52iv | 0.88 | 2.07 | 2.902 (8) | 157 |
Symmetry codes: (i) −x+2, −y, −z; (ii) −x+1, −y+1, −z; (iii) −x+2, −y−1, −z+1; (iv) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C14H5F6NO3 |
Mr | 349.19 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.5293 (4), 7.6795 (5), 24.1969 (15) |
α, β, γ (°) | 89.809 (5), 82.747 (4), 68.712 (4) |
V (Å3) | 1291.83 (13) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 1.65 |
Crystal size (mm) | 0.27 × 0.19 × 0.09 |
Data collection | |
Diffractometer | Bruker Kappa APEXII DUO CCD |
Absorption correction | Multi-scan (TWINABS; Sheldrick, 1996) |
Tmin, Tmax | 0.664, 0.868 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7781, 3296, 2467 |
Rint | 0.074 |
θmax (°) | 58.5 |
(sin θ/λ)max (Å−1) | 0.553 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.067, 0.182, 0.99 |
No. of reflections | 3296 |
No. of parameters | 434 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.40, −0.43 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Version 2.2; Macrae et al., 2008), SHELXTL (Sheldrick, 2008) and local programs.
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O1i | 0.84 | 1.84 | 2.666 (6) | 168.0 |
N1—H1···O2ii | 0.88 | 2.09 | 2.902 (7) | 153.5 |
O53—H53···O51iii | 0.84 | 1.84 | 2.675 (6) | 169.6 |
N51—H51···O52iv | 0.88 | 2.07 | 2.902 (8) | 156.6 |
Symmetry codes: (i) −x+2, −y, −z; (ii) −x+1, −y+1, −z; (iii) −x+2, −y−1, −z+1; (iv) −x+1, −y, −z+1. |
Acknowledgements
We thank the National Science Foundation for funding the diffractometer purchase (grant No. CHE-0741837).
References
Bruker (2007). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Collin, X., Robert, J., Wielgosz, G., Le Baut, G., Bobin-Dubigeon, C., Grimaud, N. & Petit, J. (2001). Eur. J. Med. Chem. 36, 639–649. Web of Science CrossRef PubMed CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
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Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Analogs of thalidomide have demonstrated promising anti-cancer activity (Ng et al., 2004). Inhibition of the angiogenesis activity of 2-(2,4-difluorophenyl)-4,5,6,7-tetrafluoroisoindoline-1,3-dione led us to synthesize and test the activity of its degradation product, 2-(2,4-difluorophenylcarbamoyl)-3,4,5,6-tetrafluorobenzoic acid, (I). In the course of doing so we determined its crystal structure.
Compound (I) was recrystallized from hexane to yield, concomitantly, small needle and prism-like crystals. Both crystal morphologies have the same unit cell parameters and data were collected on a prism crystal. Although the crystal was reasonably large the diffraction was phenomenally weak. With 60 second exposures using Cu radiation data could only be observed up to a resolution of 1 Å; the dataset was truncated at this resolution. The diffraction pattern is a non-merohedral twin with a refined twin fraction ration of 0.460 (3). A room temperature redetermination of the unit cell, using a fresh crystal, showed that twinning was still present and does not result from flash-cooling to 100 K.
The structure features two crystallographically independent molecules in the asymmetric unit. The structural discussion is limited to molecule A (atoms F1 > C14) with equivalent results for molecule B (F51 > C14) presented in square brackets. The asymmetric unit is shown in Figure 1. Figure 2 shows an overlay of both molecules,formed by overlaying the central amide group.Molecular dimensions are unexceptional. The plane of the more highly-substituted aryl ring is rotated by 69.41 (5)° [69.64 (4)°] from the amide group, and the carboxylic acid group is rotated by 58.70 (2)° [61.10 (3)°] from the aryl ring. The plane of the second aryl ring is rotated by 70.25 (4)° [66.54 (4)°] from the amide group. As can be see from Figure 3 and from the direction of rotation is different for each molecule, most easily appreciated by considering the torsion angle N1–C1–C2–C3 - 49.0 (8)° [48.5 (10)°] (similar magnitude, opposite direction).
As shown in Figures 3 and 4 the compound packs as a double tape structure with each crystallographically unique molecule hydrogen-bonded to its symmetry equivalents via O–H···O and N–H···O hydrogen bonding interactions. Each tape runs parallel to the a axis.