metal-organic compounds
Tetraaqua(4,5-diazafluoren-9-one-κ2N,N′)nickel(II) dinitrate
aMicroscale Science Institute, Department of Chemistry and Chemical Engineering, Weifang University, Weifang 261061, People's Republic of China
*Correspondence e-mail: guomeng7101@126.com
The title compound, [Ni(C11H6N2O)(H2O)4](NO3)2, was prepared by the reaction of Ni(NO3)2 and 4,5-diazafluoren-9-one (dafo). The crystal packing consists of a three-dimensional network via O—H⋯O hydrogen bonds between the coordinated water molecules and the nitrate anions. The Ni atom lies on a special position (Wyckoff position 4e, 2), as does the carbonyl O atom.
Related literature
For properties of 4,5-diazafluoren-9-one compounds, see: Prasad et al. (2001, 2002). For coordination compounds with dafo, see: Prasad et al. (2001, 2002); Li et al. (2003); Wu et al. (2003); Zhang et al. (2003). For Ni—N and Ni—O bond lengths in related structures, see: Swamy et al. (2001); Kramer et al. (2002).
Experimental
Crystal data
|
Refinement
|
Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536809041221/fi2084sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809041221/fi2084Isup2.hkl
All commercially obtained reagent-grade chemicals were used without further purification. To a solution of dafo (0.452 g, 2.5 mmol) in methanol solution (30 ml) was added Ni(NO3)2 6(H2O) (0.581 g, 2.0 mmol) in water (20 ml). The solution was stirred for 1.5 h. The resultant dark green precipitate was filtered and dried thoroughly in air. The green crystals (yield 0.79 g) were grown by slow evaporation from the water and methanol (2:3 v/v) mixed solution.
H atoms were positioned geometrically and allowed to ride on their parent atoms, with C—H and O—H distances of 0.93 and 0.85 Å, respectively, and with Uiso(H) = 1.2Ueq of the parent atoms.
4,5-diazafluoren-9-one (dafo), as well as the modified 1,10-phenanthroline (phen) neutral ligand, have allured interest in electrochemical, DNA intercalation and biological properties (Prasad et al., 2002 & Prasad et al., 2001). Because of the larger bite distance (2.99 Å) between two coordination nitrogen atoms, dafo provides an uncommon coordination environment, yielding a number of coordination compounds, such as two-dimensional sheets of [(dafone)2Cu(NCS)]n (Prasad et al., 2002), the zigzag chain structure of [Cu(Hnta)(afo)] (nta=nitrilotriacetate) (Li et al., 2003), the helical chains of cations formed by π-π stacking interaction in [Cd(dafo)2(tphpo)(CH3COO)]ClO4 (tphpo=triphenylphosphine oxide) (Wu et al., 2003), [Cu(dafone)2Cl2(dafoneH+H2O)2(ClO4)2] (Prasad et al., 2001) and [Zn(C11H6N2O)2(H2O)2](NO3)2 (Zhang et al., 2003). Compared to phen and 2,2'-bipyridine, the number of characterised metal compounds with dafo ligand is still small. Here we report the synthesis and structure of the title compound, which formes a three-dimensional network by O–H···O bonding.
The title structure (Fig. 1) features one Ni atom on a special position (Wyckoff position 4e,
2), one 4,5-diazafluoren-9-one (dafo) ligand, four coordination water molecules and two nitrate anion. Even the dafo ligand lies on a special position (Wyckoff position 4e, 2 with the C=O bond containing the twofold axis). Ni is coordinated by the two N atoms from dafo ligand, and four water molecules, yielding an overall tetragonally distorted octahedral geometry. The nitrogen donor atoms and two coordinated water molecules are found in the equatorial plane while the remaining two water molecules occupy the axial positions. The mean Ni—N and Ni—O bond lengths are similar to the reported (Swamy et al., 2001, Kramer et al., 2002). The torsion angles of O1W—Ni1—N2—C1, O2W—Ni1—N2—C1 are -91.30 (2) and -3.40 (2)°, respectively.Hydrogen bonds are formed between the water molecules and O atoms from nitrate anions and the carbonyl group of the dafo ligand. O2w···O4 hydrogen-bond interactions link neighboring cations and form the one-dimensional chains. The anion NO3- link these chains together by O1w···O and O2w···O hydrogen bonds, resulting in the three-dimensional network (Fig.2).
For properties of 4,5-diazafluoren-9-one compounds, see: Prasad et al. (2001, 2002). For coordination compounds with dafo, see: Prasad et al. (2001, 2002); Li et al. (2003); Wu et al. (2003); Zhang et al. (2003). For Ni—N and Ni—O bond lengths in related structures, see: Swamy et al. (2001); Kramer et al. (2002).
Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Ni(C11H6N2O)(H2O)4](NO3)2 | F(000) = 896 |
Mr = 436.97 | Dx = 1.751 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1023 reflections |
a = 12.904 (3) Å | θ = 2.6–25.0° |
b = 10.207 (2) Å | µ = 1.24 mm−1 |
c = 13.084 (3) Å | T = 293 K |
β = 105.85 (3)° | Prism, green |
V = 1657.8 (6) Å3 | 0.26 × 0.25 × 0.20 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 1465 independent reflections |
Radiation source: fine-focus sealed tube | 1303 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
φ and ω scans | θmax = 25.0°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −15→14 |
Tmin = 0.739, Tmax = 0.790 | k = −12→6 |
4262 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.107 | H-atom parameters constrained |
S = 1.14 | w = 1/[σ2(Fo2) + (0.0607P)2 + 2.0108P] where P = (Fo2 + 2Fc2)/3 |
1465 reflections | (Δ/σ)max < 0.001 |
124 parameters | Δρmax = 0.46 e Å−3 |
0 restraints | Δρmin = −0.60 e Å−3 |
[Ni(C11H6N2O)(H2O)4](NO3)2 | V = 1657.8 (6) Å3 |
Mr = 436.97 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 12.904 (3) Å | µ = 1.24 mm−1 |
b = 10.207 (2) Å | T = 293 K |
c = 13.084 (3) Å | 0.26 × 0.25 × 0.20 mm |
β = 105.85 (3)° |
Bruker SMART CCD area-detector diffractometer | 1465 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 1303 reflections with I > 2σ(I) |
Tmin = 0.739, Tmax = 0.790 | Rint = 0.018 |
4262 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.107 | H-atom parameters constrained |
S = 1.14 | Δρmax = 0.46 e Å−3 |
1465 reflections | Δρmin = −0.60 e Å−3 |
124 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.0000 | 0.25222 (4) | 0.2500 | 0.0324 (2) | |
O4 | 0.0000 | 0.8551 (3) | 0.2500 | 0.0626 (9) | |
N2 | 0.06304 (18) | 0.4111 (2) | 0.35714 (17) | 0.0364 (5) | |
C1 | 0.1215 (2) | 0.4279 (3) | 0.4587 (2) | 0.0457 (7) | |
H1A | 0.1466 | 0.3544 | 0.5000 | 0.055* | |
C2 | 0.1455 (3) | 0.5512 (3) | 0.5037 (2) | 0.0532 (8) | |
H2A | 0.1856 | 0.5581 | 0.5742 | 0.064* | |
C3 | 0.1109 (2) | 0.6640 (3) | 0.4459 (2) | 0.0509 (7) | |
H3A | 0.1265 | 0.7467 | 0.4759 | 0.061* | |
C4 | 0.0525 (2) | 0.6478 (3) | 0.3418 (2) | 0.0398 (6) | |
C5 | 0.0318 (2) | 0.5207 (2) | 0.3050 (2) | 0.0338 (6) | |
C6 | 0.0000 | 0.7384 (4) | 0.2500 | 0.0452 (10) | |
O1W | 0.13445 (18) | 0.24757 (16) | 0.19659 (18) | 0.0457 (5) | |
H1W1 | 0.1848 | 0.2789 | 0.1735 | 0.055* | |
H2W1 | 0.1543 | 0.1723 | 0.2223 | 0.055* | |
O2W | 0.07053 (17) | 0.11039 (19) | 0.35806 (16) | 0.0494 (5) | |
H1W2 | 0.1031 | 0.0988 | 0.4233 | 0.059* | |
H2W2 | 0.0398 | 0.0387 | 0.3341 | 0.059* | |
N1 | 0.1702 (2) | 0.9279 (3) | 0.1387 (2) | 0.0557 (7) | |
O1 | 0.2159 (2) | 0.9812 (3) | 0.2222 (2) | 0.0748 (8) | |
O2 | 0.1842 (2) | 0.8094 (3) | 0.1304 (3) | 0.0966 (11) | |
O3 | 0.1130 (3) | 0.9928 (4) | 0.0676 (2) | 0.1121 (13) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0441 (3) | 0.0220 (3) | 0.0305 (3) | 0.000 | 0.0092 (2) | 0.000 |
O4 | 0.093 (2) | 0.0298 (16) | 0.073 (2) | 0.000 | 0.0366 (19) | 0.000 |
N2 | 0.0461 (12) | 0.0296 (11) | 0.0330 (11) | 0.0009 (9) | 0.0098 (9) | 0.0010 (9) |
C1 | 0.0495 (15) | 0.0509 (17) | 0.0345 (14) | 0.0049 (13) | 0.0078 (11) | 0.0055 (12) |
C2 | 0.0532 (17) | 0.067 (2) | 0.0363 (15) | −0.0054 (15) | 0.0063 (13) | −0.0120 (15) |
C3 | 0.0580 (17) | 0.0455 (17) | 0.0504 (17) | −0.0118 (14) | 0.0172 (14) | −0.0173 (14) |
C4 | 0.0476 (14) | 0.0297 (13) | 0.0458 (15) | −0.0041 (11) | 0.0190 (12) | −0.0067 (11) |
C5 | 0.0395 (13) | 0.0297 (13) | 0.0336 (13) | −0.0008 (10) | 0.0123 (11) | −0.0028 (10) |
C6 | 0.055 (2) | 0.029 (2) | 0.060 (3) | 0.000 | 0.030 (2) | 0.000 |
O1W | 0.0526 (12) | 0.0386 (12) | 0.0502 (13) | −0.0020 (8) | 0.0214 (10) | 0.0063 (8) |
O2W | 0.0717 (14) | 0.0324 (10) | 0.0403 (11) | 0.0043 (9) | 0.0089 (9) | 0.0060 (9) |
N1 | 0.0442 (13) | 0.0670 (18) | 0.0534 (16) | 0.0116 (13) | 0.0092 (12) | −0.0186 (14) |
O1 | 0.0706 (15) | 0.0778 (18) | 0.0633 (15) | 0.0083 (13) | −0.0032 (12) | −0.0237 (13) |
O2 | 0.090 (2) | 0.070 (2) | 0.134 (3) | −0.0015 (16) | 0.0374 (19) | −0.052 (2) |
O3 | 0.103 (2) | 0.172 (3) | 0.0543 (16) | 0.077 (2) | 0.0078 (15) | 0.0039 (19) |
Ni1—O1Wi | 2.040 (2) | C3—C4 | 1.374 (4) |
Ni1—O1W | 2.040 (2) | C3—H3A | 0.9300 |
Ni1—O2Wi | 2.054 (2) | C4—C5 | 1.383 (3) |
Ni1—O2W | 2.054 (2) | C4—C6 | 1.521 (4) |
Ni1—O2W | 2.054 (2) | C5—C5i | 1.450 (5) |
Ni1—N2 | 2.153 (2) | C6—C4i | 1.521 (4) |
Ni1—N2i | 2.153 (2) | O1W—H1W1 | 0.8502 |
O4—C6 | 1.191 (4) | O1W—H2W1 | 0.8501 |
N2—C5 | 1.315 (3) | O2W—O2W | 0.000 (4) |
N2—C1 | 1.347 (4) | O2W—H1W2 | 0.8501 |
C1—C2 | 1.388 (4) | O2W—H2W2 | 0.8500 |
C1—H1A | 0.9300 | N1—O3 | 1.214 (4) |
C2—C3 | 1.382 (5) | N1—O1 | 1.219 (4) |
C2—H2A | 0.9300 | N1—O2 | 1.231 (4) |
O1Wi—Ni1—O1W | 177.33 (10) | C3—C2—C1 | 121.5 (3) |
O1Wi—Ni1—O2Wi | 87.77 (8) | C3—C2—H2A | 119.3 |
O1W—Ni1—O2Wi | 90.35 (9) | C1—C2—H2A | 119.3 |
O1Wi—Ni1—O2W | 90.35 (9) | C4—C3—C2 | 116.7 (3) |
O1W—Ni1—O2W | 87.77 (8) | C4—C3—H3A | 121.7 |
O2Wi—Ni1—O2W | 90.39 (12) | C2—C3—H3A | 121.7 |
O1Wi—Ni1—O2W | 90.35 (9) | C3—C4—C5 | 117.3 (3) |
O1W—Ni1—O2W | 87.77 (8) | C3—C4—C6 | 135.6 (3) |
O2Wi—Ni1—O2W | 90.39 (12) | C5—C4—C6 | 107.1 (2) |
O2W—Ni1—O2W | 0.00 (12) | N2—C5—C4 | 127.9 (2) |
O1Wi—Ni1—N2 | 89.99 (8) | N2—C5—C5i | 121.67 (14) |
O1W—Ni1—N2 | 92.01 (8) | C4—C5—C5i | 110.40 (16) |
O2Wi—Ni1—N2 | 175.31 (8) | O4—C6—C4i | 127.46 (15) |
O2W—Ni1—N2 | 93.74 (9) | O4—C6—C4 | 127.46 (15) |
O2W—Ni1—N2 | 93.74 (9) | C4i—C6—C4 | 105.1 (3) |
O1Wi—Ni1—N2i | 92.01 (8) | Ni1—O1W—H1W1 | 156.5 |
O1W—Ni1—N2i | 89.99 (8) | Ni1—O1W—H2W1 | 94.5 |
O2Wi—Ni1—N2i | 93.74 (9) | H1W1—O1W—H2W1 | 107.7 |
O2W—Ni1—N2i | 175.31 (8) | O2W—O2W—Ni1 | 0 (10) |
O2W—Ni1—N2i | 175.31 (8) | O2W—O2W—H1W2 | 0.0 |
N2—Ni1—N2i | 82.22 (12) | Ni1—O2W—H1W2 | 142.5 |
C5—N2—C1 | 114.4 (2) | O2W—O2W—H2W2 | 0.0 |
C5—N2—Ni1 | 107.21 (16) | Ni1—O2W—H2W2 | 106.1 |
C1—N2—Ni1 | 138.41 (19) | H1W2—O2W—H2W2 | 107.7 |
N2—C1—C2 | 122.2 (3) | O3—N1—O1 | 119.1 (3) |
N2—C1—H1A | 118.9 | O3—N1—O2 | 122.8 (3) |
C2—C1—H1A | 118.9 | O1—N1—O2 | 118.1 (3) |
Symmetry code: (i) −x, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H2W1···O2W | 0.85 | 2.40 | 2.838 (3) | 113 |
O1W—H1W1···O1ii | 0.85 | 2.61 | 3.070 (3) | 115 |
O1W—H2W1···O1iii | 0.85 | 2.11 | 2.901 (3) | 156 |
O2W—H1W2···O3iv | 0.85 | 2.08 | 2.848 (4) | 150 |
O2W—H2W2···O4iii | 0.85 | 2.16 | 2.986 (3) | 163 |
Symmetry codes: (ii) −x+1/2, y−1/2, −z+1/2; (iii) x, y−1, z; (iv) x, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C11H6N2O)(H2O)4](NO3)2 |
Mr | 436.97 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 12.904 (3), 10.207 (2), 13.084 (3) |
β (°) | 105.85 (3) |
V (Å3) | 1657.8 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.24 |
Crystal size (mm) | 0.26 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.739, 0.790 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4262, 1465, 1303 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.107, 1.14 |
No. of reflections | 1465 |
No. of parameters | 124 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.46, −0.60 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H2W1···O2W | 0.85 | 2.40 | 2.838 (3) | 113 |
O1W—H1W1···O1i | 0.85 | 2.61 | 3.070 (3) | 115 |
O1W—H2W1···O1ii | 0.85 | 2.11 | 2.901 (3) | 156 |
O2W—H1W2···O3iii | 0.85 | 2.08 | 2.848 (4) | 150 |
O2W—H2W2···O4ii | 0.85 | 2.16 | 2.986 (3) | 163 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+1/2; (ii) x, y−1, z; (iii) x, −y+1, z+1/2. |
References
Bruker (1997). SADABS, SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Kramer, R., Kovbasyuk, L. & Pritzkow, H. (2002). New J. Chem. 26, 516–518. Web of Science CSD CrossRef Google Scholar
Li, B. L., Li, B. Z., Zhu, X. & Zhang, Y. (2003). Inorg. Chem. Commun. 6, 1304–1306. Web of Science CSD CrossRef CAS Google Scholar
Prasad, K., Subhash, P. & Ekkehard, S. (2001). Inorg. Chim. Acta, 321, 193–199. Google Scholar
Prasad, K., Subhash, P., Ekkehard, S., Christopher, E. A. & Annie, K. P. (2002). Inorg. Chim. Acta, 332, 167–175. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Swamy, G. Y. S. K., Mohan, K. C. & Ravikumar, K. (2001). Cryst. Res. Technol. 36, 615–622. Web of Science CSD CrossRef CAS Google Scholar
Wu, B.-L., Zhang, H.-Y., Wu, Q.-A., Hou, H.-W. & Zh, Y. (2003). J. Mol. Struct. 655, 467–472. Web of Science CSD CrossRef CAS Google Scholar
Zhang, R. L., Zhao, J. S., Shi, Q. Z. & Ng, S. W. (2003). Acta Cryst. E59, m476–m477. Web of Science CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
4,5-diazafluoren-9-one (dafo), as well as the modified 1,10-phenanthroline (phen) neutral ligand, have allured interest in electrochemical, DNA intercalation and biological properties (Prasad et al., 2002 & Prasad et al., 2001). Because of the larger bite distance (2.99 Å) between two coordination nitrogen atoms, dafo provides an uncommon coordination environment, yielding a number of coordination compounds, such as two-dimensional sheets of [(dafone)2Cu(NCS)]n (Prasad et al., 2002), the zigzag chain structure of [Cu(Hnta)(afo)] (nta=nitrilotriacetate) (Li et al., 2003), the helical chains of cations formed by π-π stacking interaction in [Cd(dafo)2(tphpo)(CH3COO)]ClO4 (tphpo=triphenylphosphine oxide) (Wu et al., 2003), [Cu(dafone)2Cl2(dafoneH+H2O)2(ClO4)2] (Prasad et al., 2001) and [Zn(C11H6N2O)2(H2O)2](NO3)2 (Zhang et al., 2003). Compared to phen and 2,2'-bipyridine, the number of characterised metal compounds with dafo ligand is still small. Here we report the synthesis and structure of the title compound, which formes a three-dimensional network by O–H···O bonding.
The title structure (Fig. 1) features one Ni atom on a special position (Wyckoff position 4e, site symmetry 2), one 4,5-diazafluoren-9-one (dafo) ligand, four coordination water molecules and two nitrate anion. Even the dafo ligand lies on a special position (Wyckoff position 4e, site symmetry 2 with the C=O bond containing the twofold axis). Ni is coordinated by the two N atoms from dafo ligand, and four water molecules, yielding an overall tetragonally distorted octahedral geometry. The nitrogen donor atoms and two coordinated water molecules are found in the equatorial plane while the remaining two water molecules occupy the axial positions. The mean Ni—N and Ni—O bond lengths are similar to the reported (Swamy et al., 2001, Kramer et al., 2002). The torsion angles of O1W—Ni1—N2—C1, O2W—Ni1—N2—C1 are -91.30 (2) and -3.40 (2)°, respectively.
Hydrogen bonds are formed between the water molecules and O atoms from nitrate anions and the carbonyl group of the dafo ligand. O2w···O4 hydrogen-bond interactions link neighboring cations and form the one-dimensional chains. The anion NO3- link these chains together by O1w···O and O2w···O hydrogen bonds, resulting in the three-dimensional network (Fig.2).