organic compounds
Diethyl 6,13-dioxo-5,7,12,13b,13c,14-hexahydro-6H,13H-5a,6a,12a,13a-tetraazabenz[5,6]azuleno[2,1,8-ija]benz[f]azulene-13b,13c-dicarboxylate 1,2-dichloroethane solvate
aSchool of Environmental Science and Engineering, Huangshi Institute of Technology, Huangshi 435003, People's Republic of China, and bSchool of Chemical and Materials Engineering, Huangshi Institute of Technology, Huangshi 435003, People's Republic of China
*Correspondence e-mail: chwangzg@hsit.edu.cn
In the title 26H26N4O6·C2H4Cl2, the solvent molecule occupies a cavity inside the clip-type molecule which is based on the glycoluril skeleton with two ethyl acetate substituents on the convex face of the glycoluril system. The dihedral angle between the aromatic rings of the host is 43.59 (4)° and the centroid–centroid distance is 6.741 (5) Å. The 1,2-dichloroetane molecule adopts a gauche conformation enabling it to participate in C—H⋯π interactions with the host. The packing motif in the title compound differs from that observed in the crystal structures of the host and in the benzene solvate. The host molecules are linked into tapes by π–π stacking interactions (centroid–centroid distance = 3.733 Å) and are further assembled into layers via C—H⋯O interactions. One of the ethyl groups is disorded over two positions with site-occupancy factors of 0.702 (14) and 0.298 (14).
CRelated literature
For the related structures, see: Chen et al. (2007); Hof et al.,(2002); Hu et al. (2007); Isaacs & Fettinger (1999); Wang et al. (2006).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536809041373/gk2232sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809041373/gk2232Isup2.hkl
The host compound was synthesized as reported previously (Wang et al., 2006). Crystals of the title compound were obtained by slow evaporation at 293 K of 1,2-dichoroethane/methanol (vol. 3:1) solution .
The H atoms from methyl groups were placed in calculated positions, with C—H=0.96 Å, and refined to fit the electron density [Uiso(H)=1.5Ueq(C)]. Other H atoms were placed in calculated positions, with C—H = 0.93Å (aromatic) and 0.97Å (methylene), and refined in riding mode [Uiso(H)=1.2Ueq(C)]. One of the ester ethyl groups (C13,C14) is disordered over two positions. Restraints were imposed on the geometry of the disordered ethyl group and anisotropic displacement parameters. The occupanicies of the disordered atoms C13/C13' and C14/C14' refined at 0.702 (14)/0.298 (14).
Molecular clips based on the glycoluril skeleton, which have a well defined geometry due to the rigidity of the fused rings, have been prepared for a wide variety of supramolecular applications, including molecular recognition (Hu et al., 2007), molecular assemblies (Hof et al., 2002), crystal engineering (Wang et al., 2006; Chen et al., 2007),
The title host compound is a kind of molecular receptor, possessing a well defined U-shaped cavity formed by the glycoluril framework with two aromatic side walls. The crystal structures of monoclinic apohost obtained from dichloroethane solution (C2/c, Z' = 1/2; Wang et al., 2006) and monoclinic benzene solvate, C26H26N4O6.0.25C6H6, (P21/c, Z' = 2; Isaacs et al., 1999) have been already reported. Here, we report the structure of a new solvate (P-1, Z' = 1), C26H26N4O6.C2H4Cl2, crystallized from 1,2-dichoroethane/methanol (3:1 vol.) solution.
In the triclinic pseudopolymorph, the π interaction betweeen the host and the guest. The distance between atom H28B and Cg2 (the centroid of the C21—C26 ring) is 2.67 Å (Table 1).
contains one host molecule and one solvent molecule of 1,2-dichloroethane (Fig.1). There is a C-H···As solvent molecule occupies the cavity, the title compound exhibits different packing motif than the previously known two monoclinic forms. In Isaacs structure, the molecule was kined into three-dimensional network structure by π-π stacking, C—H···π and C—H···O hydrogen-bonds. In our previously reported structure of the apohost, the ethyl group occupied the cavity with C—H···π interactions and the molecules were linked into layers to the ab plane by four pairs of C—H···O hydrogen-bonds parallel .
The title molecules are linked into tapes by π-π stacking interactions. The benzene rings Cg1 (C1—C6) in the molecules at (x, y, z) and (1 - x, 1 - y, 1 - z) are strictly parallel, with an of 3.589 Å, a ring centroid separation of 3.733 Å and a centroid offset of 1.027 Å. In addition, intermolecular C—H···O (Table 1) hydrogen-bonds link molecules into two-dimensional layer structure.
For the related structures, see: Chen et al. (2007); Hof et al.,(2002); Hu et al. (2007); Isaacs & Fettinger (1999); Wang et al. (2006). Cg2 is the centroid of the C21–C26 ring.
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound with 50% probability displacement ellipsoids. | |
Fig. 2. Crystal packing of the title compound |
C26H26N4O6·C2H4Cl2 | Z = 2 |
Mr = 589.46 | F(000) = 616 |
Triclinic, P1 | Dx = 1.380 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.9468 (10) Å | Cell parameters from 5260 reflections |
b = 11.1544 (13) Å | θ = 2.3–26.1° |
c = 15.6260 (18) Å | µ = 0.28 mm−1 |
α = 69.257 (2)° | T = 292 K |
β = 82.688 (2)° | Block, colorless |
γ = 76.892 (2)° | 0.30 × 0.20 × 0.10 mm |
V = 1418.5 (3) Å3 |
Bruker SMART CCD area-detector diffractometer | 4056 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.020 |
Graphite monochromator | θmax = 25.0°, θmin = 2.0° |
φ and ω scans | h = −10→10 |
10171 measured reflections | k = −13→13 |
4947 independent reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.063 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.188 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.1032P)2 + 0.8923P] where P = (Fo2 + 2Fc2)/3 |
4947 reflections | (Δ/σ)max = 0.001 |
383 parameters | Δρmax = 0.69 e Å−3 |
28 restraints | Δρmin = −0.64 e Å−3 |
C26H26N4O6·C2H4Cl2 | γ = 76.892 (2)° |
Mr = 589.46 | V = 1418.5 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.9468 (10) Å | Mo Kα radiation |
b = 11.1544 (13) Å | µ = 0.28 mm−1 |
c = 15.6260 (18) Å | T = 292 K |
α = 69.257 (2)° | 0.30 × 0.20 × 0.10 mm |
β = 82.688 (2)° |
Bruker SMART CCD area-detector diffractometer | 4056 reflections with I > 2σ(I) |
10171 measured reflections | Rint = 0.020 |
4947 independent reflections |
R[F2 > 2σ(F2)] = 0.063 | 28 restraints |
wR(F2) = 0.188 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.69 e Å−3 |
4947 reflections | Δρmin = −0.64 e Å−3 |
383 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.3563 (3) | 0.4517 (3) | 0.43467 (17) | 0.0419 (6) | |
C2 | 0.4101 (3) | 0.3329 (3) | 0.5006 (2) | 0.0527 (7) | |
H2 | 0.3424 | 0.2944 | 0.5472 | 0.063* | |
C3 | 0.5627 (4) | 0.2702 (3) | 0.4988 (2) | 0.0585 (8) | |
H3 | 0.5962 | 0.1900 | 0.5434 | 0.070* | |
C4 | 0.6644 (3) | 0.3268 (3) | 0.4308 (2) | 0.0558 (8) | |
H4 | 0.7670 | 0.2856 | 0.4294 | 0.067* | |
C5 | 0.6127 (3) | 0.4452 (3) | 0.3650 (2) | 0.0489 (7) | |
H5 | 0.6816 | 0.4833 | 0.3191 | 0.059* | |
C6 | 0.4600 (3) | 0.5090 (3) | 0.36552 (18) | 0.0418 (6) | |
C7 | 0.4116 (3) | 0.6394 (3) | 0.29185 (19) | 0.0477 (7) | |
H7A | 0.3833 | 0.7071 | 0.3197 | 0.057* | |
H7B | 0.4982 | 0.6589 | 0.2487 | 0.057* | |
C8 | 0.1895 (3) | 0.5177 (3) | 0.44266 (18) | 0.0453 (6) | |
H8A | 0.1394 | 0.4605 | 0.4949 | 0.054* | |
H8B | 0.1866 | 0.5974 | 0.4552 | 0.054* | |
C9 | 0.2946 (3) | 0.6387 (2) | 0.15541 (18) | 0.0398 (6) | |
C10 | 0.0566 (3) | 0.4531 (2) | 0.34105 (17) | 0.0372 (6) | |
C11 | 0.1265 (3) | 0.6567 (2) | 0.27998 (17) | 0.0378 (6) | |
C12 | 0.0736 (3) | 0.7930 (3) | 0.2899 (2) | 0.0508 (7) | |
C14 | −0.0459 (15) | 0.9472 (8) | 0.4212 (6) | 0.128 (4) | 0.702 (14) |
H14A | −0.0458 | 0.8751 | 0.4776 | 0.192* | 0.702 (14) |
H14B | −0.0985 | 1.0265 | 0.4314 | 0.192* | 0.702 (14) |
H14C | 0.0581 | 0.9543 | 0.3994 | 0.192* | 0.702 (14) |
C13 | −0.1260 (11) | 0.9249 (6) | 0.3514 (6) | 0.095 (3) | 0.702 (14) |
H13A | −0.2332 | 0.9230 | 0.3705 | 0.114* | 0.702 (14) |
H13B | −0.1203 | 0.9933 | 0.2925 | 0.114* | 0.702 (14) |
C15 | 0.0392 (3) | 0.6362 (2) | 0.20652 (16) | 0.0368 (5) | |
C16 | −0.1181 (3) | 0.7301 (3) | 0.18476 (19) | 0.0444 (6) | |
C17 | −0.2468 (4) | 0.9420 (3) | 0.1062 (3) | 0.0680 (9) | |
H17A | −0.3236 | 0.9100 | 0.0863 | 0.082* | |
H17B | −0.2870 | 0.9616 | 0.1614 | 0.082* | |
C18 | −0.2110 (6) | 1.0594 (4) | 0.0345 (3) | 0.0979 (15) | |
H18A | −0.1399 | 1.0935 | 0.0562 | 0.147* | |
H18B | −0.3036 | 1.1239 | 0.0187 | 0.147* | |
H18C | −0.1658 | 1.0379 | −0.0187 | 0.147* | |
C19 | −0.0402 (3) | 0.4324 (3) | 0.20547 (18) | 0.0429 (6) | |
H19A | −0.1262 | 0.4892 | 0.1699 | 0.052* | |
H19B | −0.0778 | 0.3591 | 0.2512 | 0.052* | |
C20 | 0.1259 (3) | 0.6119 (3) | 0.05267 (17) | 0.0428 (6) | |
H20A | 0.1919 | 0.6513 | 0.0009 | 0.051* | |
H20B | 0.0205 | 0.6467 | 0.0350 | 0.051* | |
C21 | 0.0802 (3) | 0.3813 (3) | 0.14224 (17) | 0.0419 (6) | |
C22 | 0.1590 (3) | 0.4658 (3) | 0.07154 (17) | 0.0406 (6) | |
C23 | 0.2683 (3) | 0.4133 (3) | 0.01628 (19) | 0.0493 (7) | |
H23 | 0.3224 | 0.4681 | −0.0301 | 0.059* | |
C24 | 0.2981 (4) | 0.2818 (3) | 0.0286 (2) | 0.0550 (7) | |
H24 | 0.3710 | 0.2487 | −0.0095 | 0.066* | |
C25 | 0.2200 (4) | 0.1994 (3) | 0.0975 (2) | 0.0572 (8) | |
H25 | 0.2394 | 0.1106 | 0.1059 | 0.069* | |
C26 | 0.1127 (3) | 0.2490 (3) | 0.1541 (2) | 0.0497 (7) | |
H26 | 0.0611 | 0.1927 | 0.2011 | 0.060* | |
C27 | 0.4248 (6) | 0.1793 (8) | 0.3161 (4) | 0.130 (2) | |
H27A | 0.3189 | 0.2096 | 0.3335 | 0.156* | |
H27B | 0.4875 | 0.1658 | 0.3663 | 0.156* | |
C28 | 0.4742 (5) | 0.2807 (4) | 0.2334 (4) | 0.0969 (16) | |
H28A | 0.4497 | 0.3640 | 0.2436 | 0.116* | |
H28B | 0.4169 | 0.2891 | 0.1822 | 0.116* | |
Cl1 | 0.4405 (2) | 0.03136 (15) | 0.29818 (12) | 0.1337 (6) | |
Cl2 | 0.67477 (15) | 0.24467 (12) | 0.20429 (9) | 0.0987 (4) | |
N1 | 0.2825 (2) | 0.6424 (2) | 0.24224 (15) | 0.0421 (5) | |
N2 | 0.1009 (2) | 0.5506 (2) | 0.36207 (14) | 0.0387 (5) | |
N3 | 0.1477 (2) | 0.6518 (2) | 0.12931 (13) | 0.0373 (5) | |
N4 | 0.0168 (2) | 0.5040 (2) | 0.25176 (14) | 0.0392 (5) | |
O1 | 0.4116 (2) | 0.6274 (2) | 0.10852 (13) | 0.0527 (5) | |
O2 | 0.0510 (2) | 0.34424 (19) | 0.39298 (13) | 0.0516 (5) | |
O3 | 0.1344 (3) | 0.8818 (2) | 0.2469 (2) | 0.0853 (8) | |
O4 | −0.0449 (3) | 0.7988 (2) | 0.3460 (2) | 0.0856 (8) | |
O5 | −0.2343 (3) | 0.7010 (3) | 0.2211 (2) | 0.0865 (9) | |
O6 | −0.1047 (2) | 0.84312 (19) | 0.12437 (15) | 0.0582 (6) | |
C14' | −0.178 (2) | 0.9307 (14) | 0.4359 (10) | 0.083 (6) | 0.298 (14) |
H14D | −0.2692 | 0.9053 | 0.4272 | 0.125* | 0.298 (14) |
H14E | −0.2036 | 1.0188 | 0.4364 | 0.125* | 0.298 (14) |
H14F | −0.1368 | 0.8732 | 0.4933 | 0.125* | 0.298 (14) |
C13' | −0.062 (3) | 0.9224 (17) | 0.3593 (19) | 0.109 (9) | 0.298 (14) |
H13C | −0.0937 | 0.9929 | 0.3033 | 0.131* | 0.298 (14) |
H13D | 0.0366 | 0.9318 | 0.3737 | 0.131* | 0.298 (14) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0371 (13) | 0.0563 (16) | 0.0361 (13) | −0.0142 (11) | −0.0003 (10) | −0.0176 (12) |
C2 | 0.0476 (16) | 0.0627 (18) | 0.0445 (15) | −0.0184 (13) | −0.0048 (12) | −0.0086 (13) |
C3 | 0.0564 (19) | 0.0537 (17) | 0.0596 (18) | −0.0080 (14) | −0.0156 (15) | −0.0096 (14) |
C4 | 0.0385 (15) | 0.0658 (19) | 0.068 (2) | −0.0054 (13) | −0.0085 (14) | −0.0292 (16) |
C5 | 0.0338 (14) | 0.0666 (18) | 0.0494 (16) | −0.0145 (12) | 0.0019 (12) | −0.0218 (14) |
C6 | 0.0354 (13) | 0.0540 (15) | 0.0411 (14) | −0.0148 (11) | −0.0013 (11) | −0.0187 (12) |
C7 | 0.0353 (14) | 0.0592 (17) | 0.0485 (15) | −0.0192 (12) | −0.0022 (11) | −0.0118 (13) |
C8 | 0.0372 (14) | 0.0653 (17) | 0.0349 (13) | −0.0139 (12) | 0.0024 (11) | −0.0176 (12) |
C9 | 0.0352 (13) | 0.0367 (13) | 0.0410 (14) | −0.0095 (10) | 0.0016 (11) | −0.0049 (10) |
C10 | 0.0270 (12) | 0.0450 (14) | 0.0365 (13) | −0.0094 (10) | 0.0044 (10) | −0.0105 (11) |
C11 | 0.0305 (12) | 0.0421 (13) | 0.0402 (13) | −0.0094 (10) | 0.0005 (10) | −0.0123 (11) |
C12 | 0.0506 (17) | 0.0498 (16) | 0.0552 (17) | −0.0114 (13) | −0.0061 (14) | −0.0194 (14) |
C14 | 0.196 (11) | 0.081 (5) | 0.103 (6) | 0.005 (6) | −0.015 (6) | −0.044 (4) |
C13 | 0.089 (5) | 0.063 (4) | 0.115 (5) | 0.019 (3) | 0.020 (4) | −0.036 (3) |
C15 | 0.0323 (12) | 0.0401 (13) | 0.0359 (13) | −0.0097 (10) | 0.0002 (10) | −0.0094 (10) |
C16 | 0.0347 (14) | 0.0491 (15) | 0.0466 (15) | −0.0094 (11) | −0.0008 (11) | −0.0125 (12) |
C17 | 0.0547 (19) | 0.0559 (19) | 0.076 (2) | 0.0096 (15) | −0.0052 (16) | −0.0134 (16) |
C18 | 0.099 (3) | 0.054 (2) | 0.103 (3) | 0.013 (2) | 0.000 (3) | 0.000 (2) |
C19 | 0.0405 (14) | 0.0486 (15) | 0.0423 (14) | −0.0183 (11) | 0.0012 (11) | −0.0136 (12) |
C20 | 0.0441 (14) | 0.0478 (15) | 0.0330 (13) | −0.0109 (11) | −0.0008 (11) | −0.0085 (11) |
C21 | 0.0398 (14) | 0.0502 (15) | 0.0383 (13) | −0.0132 (11) | −0.0062 (11) | −0.0140 (11) |
C22 | 0.0378 (13) | 0.0494 (15) | 0.0353 (13) | −0.0096 (11) | −0.0032 (10) | −0.0140 (11) |
C23 | 0.0454 (15) | 0.0612 (18) | 0.0432 (15) | −0.0137 (13) | 0.0013 (12) | −0.0189 (13) |
C24 | 0.0495 (17) | 0.0634 (19) | 0.0596 (18) | −0.0066 (14) | 0.0005 (14) | −0.0337 (15) |
C25 | 0.0621 (19) | 0.0514 (17) | 0.0642 (19) | −0.0075 (14) | −0.0086 (15) | −0.0272 (15) |
C26 | 0.0543 (17) | 0.0487 (16) | 0.0494 (16) | −0.0181 (13) | −0.0049 (13) | −0.0146 (13) |
C27 | 0.073 (3) | 0.229 (8) | 0.118 (4) | −0.017 (4) | 0.000 (3) | −0.105 (5) |
C28 | 0.089 (3) | 0.066 (2) | 0.145 (4) | 0.007 (2) | −0.055 (3) | −0.044 (3) |
Cl1 | 0.1401 (13) | 0.1025 (10) | 0.1312 (12) | −0.0443 (9) | −0.0254 (10) | 0.0126 (8) |
Cl2 | 0.1068 (9) | 0.0891 (8) | 0.1020 (8) | −0.0310 (6) | 0.0009 (7) | −0.0292 (6) |
N1 | 0.0317 (11) | 0.0554 (13) | 0.0394 (12) | −0.0153 (9) | 0.0016 (9) | −0.0134 (10) |
N2 | 0.0312 (11) | 0.0488 (12) | 0.0351 (11) | −0.0116 (9) | 0.0020 (8) | −0.0119 (9) |
N3 | 0.0331 (11) | 0.0408 (11) | 0.0344 (11) | −0.0087 (8) | 0.0027 (8) | −0.0090 (9) |
N4 | 0.0401 (11) | 0.0413 (11) | 0.0369 (11) | −0.0146 (9) | 0.0001 (9) | −0.0107 (9) |
O1 | 0.0362 (10) | 0.0659 (13) | 0.0494 (11) | −0.0124 (9) | 0.0105 (9) | −0.0143 (9) |
O2 | 0.0540 (12) | 0.0500 (11) | 0.0436 (11) | −0.0175 (9) | −0.0005 (9) | −0.0034 (9) |
O3 | 0.106 (2) | 0.0513 (14) | 0.101 (2) | −0.0313 (14) | 0.0131 (17) | −0.0258 (14) |
O4 | 0.0864 (18) | 0.0585 (14) | 0.101 (2) | −0.0014 (13) | 0.0328 (16) | −0.0346 (14) |
O5 | 0.0343 (12) | 0.0731 (16) | 0.119 (2) | −0.0072 (10) | 0.0087 (13) | 0.0011 (15) |
O6 | 0.0463 (11) | 0.0451 (11) | 0.0637 (13) | 0.0029 (9) | 0.0031 (9) | −0.0041 (10) |
C14' | 0.103 (11) | 0.060 (7) | 0.082 (9) | 0.005 (7) | −0.001 (8) | −0.031 (6) |
C13' | 0.102 (12) | 0.102 (11) | 0.117 (12) | −0.003 (8) | 0.006 (9) | −0.044 (8) |
C1—C2 | 1.385 (4) | C16—O6 | 1.300 (3) |
C1—C6 | 1.401 (4) | C17—C18 | 1.460 (5) |
C1—C8 | 1.518 (4) | C17—O6 | 1.465 (4) |
C2—C3 | 1.388 (4) | C17—H17A | 0.9700 |
C2—H2 | 0.9300 | C17—H17B | 0.9700 |
C3—C4 | 1.377 (5) | C18—H18A | 0.9600 |
C3—H3 | 0.9300 | C18—H18B | 0.9600 |
C4—C5 | 1.377 (4) | C18—H18C | 0.9600 |
C4—H4 | 0.9300 | C19—N4 | 1.453 (3) |
C5—C6 | 1.391 (4) | C19—C21 | 1.520 (4) |
C5—H5 | 0.9300 | C19—H19A | 0.9700 |
C6—C7 | 1.511 (4) | C19—H19B | 0.9700 |
C7—N1 | 1.459 (3) | C20—N3 | 1.466 (3) |
C7—H7A | 0.9700 | C20—C22 | 1.515 (4) |
C7—H7B | 0.9700 | C20—H20A | 0.9700 |
C8—N2 | 1.464 (3) | C20—H20B | 0.9700 |
C8—H8A | 0.9700 | C21—C26 | 1.387 (4) |
C8—H8B | 0.9700 | C21—C22 | 1.403 (4) |
C9—O1 | 1.208 (3) | C22—C23 | 1.389 (4) |
C9—N1 | 1.362 (3) | C23—C24 | 1.376 (4) |
C9—N3 | 1.386 (3) | C23—H23 | 0.9300 |
C10—O2 | 1.206 (3) | C24—C25 | 1.375 (5) |
C10—N4 | 1.367 (3) | C24—H24 | 0.9300 |
C10—N2 | 1.389 (3) | C25—C26 | 1.378 (4) |
C11—N2 | 1.439 (3) | C25—H25 | 0.9300 |
C11—N1 | 1.441 (3) | C26—H26 | 0.9300 |
C11—C12 | 1.543 (4) | C27—C28 | 1.480 (8) |
C11—C15 | 1.573 (3) | C27—Cl1 | 1.742 (7) |
C12—O3 | 1.186 (4) | C27—H27A | 0.9700 |
C12—O4 | 1.292 (4) | C27—H27B | 0.9700 |
C14—C13 | 1.496 (8) | C28—Cl2 | 1.784 (5) |
C14—H14A | 0.9600 | C28—H28A | 0.9700 |
C14—H14B | 0.9600 | C28—H28B | 0.9700 |
C14—H14C | 0.9600 | O4—C13' | 1.438 (9) |
C13—O4 | 1.455 (5) | C14'—C13' | 1.500 (9) |
C13—H13A | 0.9700 | C14'—H14D | 0.9600 |
C13—H13B | 0.9700 | C14'—H14E | 0.9600 |
C15—N3 | 1.435 (3) | C14'—H14F | 0.9600 |
C15—N4 | 1.440 (3) | C13'—H13C | 0.9700 |
C15—C16 | 1.547 (4) | C13'—H13D | 0.9700 |
C16—O5 | 1.175 (3) | ||
C2—C1—C6 | 118.6 (3) | H18B—C18—H18C | 109.5 |
C2—C1—C8 | 118.8 (2) | N4—C19—C21 | 113.5 (2) |
C6—C1—C8 | 122.5 (2) | N4—C19—H19A | 108.9 |
C1—C2—C3 | 121.4 (3) | C21—C19—H19A | 108.9 |
C1—C2—H2 | 119.3 | N4—C19—H19B | 108.9 |
C3—C2—H2 | 119.3 | C21—C19—H19B | 108.9 |
C4—C3—C2 | 119.8 (3) | H19A—C19—H19B | 107.7 |
C4—C3—H3 | 120.1 | N3—C20—C22 | 115.3 (2) |
C2—C3—H3 | 120.1 | N3—C20—H20A | 108.4 |
C3—C4—C5 | 119.3 (3) | C22—C20—H20A | 108.4 |
C3—C4—H4 | 120.3 | N3—C20—H20B | 108.4 |
C5—C4—H4 | 120.3 | C22—C20—H20B | 108.4 |
C4—C5—C6 | 121.6 (3) | H20A—C20—H20B | 107.5 |
C4—C5—H5 | 119.2 | C26—C21—C22 | 119.2 (3) |
C6—C5—H5 | 119.2 | C26—C21—C19 | 119.6 (2) |
C5—C6—C1 | 119.2 (3) | C22—C21—C19 | 121.3 (2) |
C5—C6—C7 | 118.8 (2) | C23—C22—C21 | 118.6 (3) |
C1—C6—C7 | 122.0 (2) | C23—C22—C20 | 119.3 (2) |
N1—C7—C6 | 112.8 (2) | C21—C22—C20 | 122.1 (2) |
N1—C7—H7A | 109.0 | C24—C23—C22 | 121.4 (3) |
C6—C7—H7A | 109.0 | C24—C23—H23 | 119.3 |
N1—C7—H7B | 109.0 | C22—C23—H23 | 119.3 |
C6—C7—H7B | 109.0 | C25—C24—C23 | 119.9 (3) |
H7A—C7—H7B | 107.8 | C25—C24—H24 | 120.0 |
N2—C8—C1 | 115.4 (2) | C23—C24—H24 | 120.0 |
N2—C8—H8A | 108.4 | C24—C25—C26 | 119.7 (3) |
C1—C8—H8A | 108.4 | C24—C25—H25 | 120.1 |
N2—C8—H8B | 108.4 | C26—C25—H25 | 120.1 |
C1—C8—H8B | 108.4 | C25—C26—C21 | 121.2 (3) |
H8A—C8—H8B | 107.5 | C25—C26—H26 | 119.4 |
O1—C9—N1 | 126.6 (2) | C21—C26—H26 | 119.4 |
O1—C9—N3 | 125.6 (2) | C28—C27—Cl1 | 112.0 (4) |
N1—C9—N3 | 107.8 (2) | C28—C27—H27A | 109.2 |
O2—C10—N4 | 126.3 (2) | Cl1—C27—H27A | 109.2 |
O2—C10—N2 | 126.0 (2) | C28—C27—H27B | 109.2 |
N4—C10—N2 | 107.6 (2) | Cl1—C27—H27B | 109.2 |
N2—C11—N1 | 113.7 (2) | H27A—C27—H27B | 107.9 |
N2—C11—C12 | 113.9 (2) | C27—C28—Cl2 | 112.9 (3) |
N1—C11—C12 | 110.0 (2) | C27—C28—H28A | 109.0 |
N2—C11—C15 | 103.24 (19) | Cl2—C28—H28A | 109.0 |
N1—C11—C15 | 101.53 (19) | C27—C28—H28B | 109.0 |
C12—C11—C15 | 113.7 (2) | Cl2—C28—H28B | 109.0 |
O3—C12—O4 | 125.4 (3) | H28A—C28—H28B | 107.8 |
O3—C12—C11 | 122.0 (3) | C9—N1—C11 | 113.3 (2) |
O4—C12—C11 | 112.6 (2) | C9—N1—C7 | 124.3 (2) |
O4—C13—C14 | 105.1 (6) | C11—N1—C7 | 122.2 (2) |
O4—C13—H13A | 110.7 | C10—N2—C11 | 110.7 (2) |
C14—C13—H13A | 110.7 | C10—N2—C8 | 120.4 (2) |
O4—C13—H13B | 110.7 | C11—N2—C8 | 120.6 (2) |
C14—C13—H13B | 110.7 | C9—N3—C15 | 111.0 (2) |
H13A—C13—H13B | 108.8 | C9—N3—C20 | 120.1 (2) |
N3—C15—N4 | 114.1 (2) | C15—N3—C20 | 120.6 (2) |
N3—C15—C16 | 113.7 (2) | C10—N4—C15 | 113.5 (2) |
N4—C15—C16 | 109.9 (2) | C10—N4—C19 | 123.9 (2) |
N3—C15—C11 | 103.08 (18) | C15—N4—C19 | 122.6 (2) |
N4—C15—C11 | 101.56 (19) | C12—O4—C13' | 105.1 (7) |
C16—C15—C11 | 113.7 (2) | C12—O4—C13 | 119.7 (5) |
O5—C16—O6 | 125.1 (3) | C13'—O4—C13 | 23.8 (11) |
O5—C16—C15 | 122.6 (3) | C16—O6—C17 | 115.7 (2) |
O6—C16—C15 | 112.2 (2) | C13'—C14'—H14D | 109.5 |
C18—C17—O6 | 107.9 (3) | C13'—C14'—H14E | 109.5 |
C18—C17—H17A | 110.1 | H14D—C14'—H14E | 109.5 |
O6—C17—H17A | 110.1 | C13'—C14'—H14F | 109.5 |
C18—C17—H17B | 110.1 | H14D—C14'—H14F | 109.5 |
O6—C17—H17B | 110.1 | H14E—C14'—H14F | 109.5 |
H17A—C17—H17B | 108.4 | O4—C13'—C14' | 110.2 (11) |
C17—C18—H18A | 109.5 | O4—C13'—H13C | 109.6 |
C17—C18—H18B | 109.5 | C14'—C13'—H13C | 109.6 |
H18A—C18—H18B | 109.5 | O4—C13'—H13D | 109.6 |
C17—C18—H18C | 109.5 | C14'—C13'—H13D | 109.6 |
H18A—C18—H18C | 109.5 | H13C—C13'—H13D | 108.1 |
C6—C1—C2—C3 | −0.6 (4) | N2—C11—N1—C9 | 120.0 (2) |
C8—C1—C2—C3 | −177.7 (3) | C12—C11—N1—C9 | −110.9 (2) |
C1—C2—C3—C4 | 0.7 (5) | C15—C11—N1—C9 | 9.8 (3) |
C2—C3—C4—C5 | −0.4 (5) | N2—C11—N1—C7 | −63.1 (3) |
C3—C4—C5—C6 | 0.1 (5) | C12—C11—N1—C7 | 66.1 (3) |
C4—C5—C6—C1 | 0.0 (4) | C15—C11—N1—C7 | −173.2 (2) |
C4—C5—C6—C7 | 179.3 (3) | C6—C7—N1—C9 | −105.6 (3) |
C2—C1—C6—C5 | 0.3 (4) | C6—C7—N1—C11 | 77.8 (3) |
C8—C1—C6—C5 | 177.2 (2) | O2—C10—N2—C11 | 167.3 (2) |
C2—C1—C6—C7 | −179.0 (3) | N4—C10—N2—C11 | −14.3 (3) |
C8—C1—C6—C7 | −2.0 (4) | O2—C10—N2—C8 | 18.7 (4) |
C5—C6—C7—N1 | 125.7 (3) | N4—C10—N2—C8 | −162.9 (2) |
C1—C6—C7—N1 | −55.0 (4) | N1—C11—N2—C10 | −90.4 (2) |
C2—C1—C8—N2 | −125.1 (3) | C12—C11—N2—C10 | 142.5 (2) |
C6—C1—C8—N2 | 57.9 (4) | C15—C11—N2—C10 | 18.7 (2) |
N2—C11—C12—O3 | 150.2 (3) | N1—C11—N2—C8 | 58.1 (3) |
N1—C11—C12—O3 | 21.2 (4) | C12—C11—N2—C8 | −69.0 (3) |
C15—C11—C12—O3 | −91.9 (3) | C15—C11—N2—C8 | 167.2 (2) |
N2—C11—C12—O4 | −32.4 (3) | C1—C8—N2—C10 | 72.8 (3) |
N1—C11—C12—O4 | −161.4 (3) | C1—C8—N2—C11 | −72.7 (3) |
C15—C11—C12—O4 | 85.6 (3) | O1—C9—N3—C15 | 168.2 (2) |
N2—C11—C15—N3 | −134.01 (19) | N1—C9—N3—C15 | −12.5 (3) |
N1—C11—C15—N3 | −16.0 (2) | O1—C9—N3—C20 | 19.6 (4) |
C12—C11—C15—N3 | 102.1 (2) | N1—C9—N3—C20 | −161.1 (2) |
N2—C11—C15—N4 | −15.6 (2) | N4—C15—N3—C9 | −91.4 (2) |
N1—C11—C15—N4 | 102.4 (2) | C16—C15—N3—C9 | 141.5 (2) |
C12—C11—C15—N4 | −139.5 (2) | C11—C15—N3—C9 | 17.9 (3) |
N2—C11—C15—C16 | 102.4 (2) | N4—C15—N3—C20 | 57.1 (3) |
N1—C11—C15—C16 | −139.6 (2) | C16—C15—N3—C20 | −70.1 (3) |
C12—C11—C15—C16 | −21.5 (3) | C11—C15—N3—C20 | 166.3 (2) |
N3—C15—C16—O5 | 147.3 (3) | C22—C20—N3—C9 | 71.6 (3) |
N4—C15—C16—O5 | 18.0 (4) | C22—C20—N3—C15 | −74.0 (3) |
C11—C15—C16—O5 | −95.1 (3) | O2—C10—N4—C15 | −178.7 (2) |
N3—C15—C16—O6 | −34.2 (3) | N2—C10—N4—C15 | 2.9 (3) |
N4—C15—C16—O6 | −163.5 (2) | O2—C10—N4—C19 | 0.3 (4) |
C11—C15—C16—O6 | 83.4 (3) | N2—C10—N4—C19 | −178.1 (2) |
N4—C19—C21—C26 | 124.3 (3) | N3—C15—N4—C10 | 118.4 (2) |
N4—C19—C21—C22 | −56.0 (3) | C16—C15—N4—C10 | −112.5 (2) |
C26—C21—C22—C23 | −0.7 (4) | C11—C15—N4—C10 | 8.3 (3) |
C19—C21—C22—C23 | 179.7 (2) | N3—C15—N4—C19 | −60.6 (3) |
C26—C21—C22—C20 | 178.0 (2) | C16—C15—N4—C19 | 68.5 (3) |
C19—C21—C22—C20 | −1.6 (4) | C11—C15—N4—C19 | −170.8 (2) |
N3—C20—C22—C23 | −122.5 (3) | C21—C19—N4—C10 | −102.0 (3) |
N3—C20—C22—C21 | 58.8 (3) | C21—C19—N4—C15 | 76.9 (3) |
C21—C22—C23—C24 | 1.2 (4) | O3—C12—O4—C13' | −12.5 (15) |
C20—C22—C23—C24 | −177.6 (3) | C11—C12—O4—C13' | 170.2 (14) |
C22—C23—C24—C25 | −0.7 (4) | O3—C12—O4—C13 | 8.0 (7) |
C23—C24—C25—C26 | −0.4 (5) | C11—C12—O4—C13 | −169.3 (5) |
C24—C25—C26—C21 | 0.8 (4) | C14—C13—O4—C12 | −88.2 (9) |
C22—C21—C26—C25 | −0.3 (4) | C14—C13—O4—C13' | −32 (3) |
C19—C21—C26—C25 | 179.3 (3) | O5—C16—O6—C17 | 4.0 (5) |
Cl1—C27—C28—Cl2 | −66.8 (4) | C15—C16—O6—C17 | −174.5 (3) |
O1—C9—N1—C11 | −180.0 (2) | C18—C17—O6—C16 | −177.6 (3) |
N3—C9—N1—C11 | 0.7 (3) | C12—O4—C13'—C14' | −170.1 (18) |
O1—C9—N1—C7 | 3.2 (4) | C13—O4—C13'—C14' | 58.7 (18) |
N3—C9—N1—C7 | −176.2 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C28—H28B···Cg2 | 0.97 | 2.55 | 3.476 (3) | 160 |
C5—H5···O5i | 0.93 | 2.59 | 3.393 (4) | 145 |
C7—H7B···O5i | 0.97 | 2.50 | 3.359 (3) | 148 |
C14—H14A···O2ii | 0.96 | 2.57 | 3.514 (9) | 168 |
C14′—H14F···O2ii | 0.96 | 2.47 | 3.351 (6) | 153 |
Symmetry codes: (i) x+1, y, z; (ii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C26H26N4O6·C2H4Cl2 |
Mr | 589.46 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 292 |
a, b, c (Å) | 8.9468 (10), 11.1544 (13), 15.6260 (18) |
α, β, γ (°) | 69.257 (2), 82.688 (2), 76.892 (2) |
V (Å3) | 1418.5 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.30 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10171, 4947, 4056 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.063, 0.188, 1.04 |
No. of reflections | 4947 |
No. of parameters | 383 |
No. of restraints | 28 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.69, −0.64 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C28—H28B···Cg2 | 0.97 | 2.55 | 3.476 (3) | 160 |
C5—H5···O5i | 0.93 | 2.59 | 3.393 (4) | 145 |
C7—H7B···O5i | 0.97 | 2.50 | 3.359 (3) | 148 |
C14—H14A···O2ii | 0.96 | 2.57 | 3.514 (9) | 168 |
C14'—H14F···O2ii | 0.96 | 2.47 | 3.351 (6) | 153 |
Symmetry codes: (i) x+1, y, z; (ii) −x, −y+1, −z+1. |
Acknowledgements
This study was financially supported by Huangshi Institute of Technology (B20083002).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Molecular clips based on the glycoluril skeleton, which have a well defined geometry due to the rigidity of the fused rings, have been prepared for a wide variety of supramolecular applications, including molecular recognition (Hu et al., 2007), molecular assemblies (Hof et al., 2002), crystal engineering (Wang et al., 2006; Chen et al., 2007),
The title host compound is a kind of molecular receptor, possessing a well defined U-shaped cavity formed by the glycoluril framework with two aromatic side walls. The crystal structures of monoclinic apohost obtained from dichloroethane solution (C2/c, Z' = 1/2; Wang et al., 2006) and monoclinic benzene solvate, C26H26N4O6.0.25C6H6, (P21/c, Z' = 2; Isaacs et al., 1999) have been already reported. Here, we report the structure of a new solvate (P-1, Z' = 1), C26H26N4O6.C2H4Cl2, crystallized from 1,2-dichoroethane/methanol (3:1 vol.) solution.
In the triclinic pseudopolymorph, the asymmetric unit contains one host molecule and one solvent molecule of 1,2-dichloroethane (Fig.1). There is a C-H···π interaction betweeen the host and the guest. The distance between atom H28B and Cg2 (the centroid of the C21—C26 ring) is 2.67 Å (Table 1).
As solvent molecule occupies the cavity, the title compound exhibits different packing motif than the previously known two monoclinic forms. In Isaacs structure, the molecule was kined into three-dimensional network structure by π-π stacking, C—H···π and C—H···O hydrogen-bonds. In our previously reported structure of the apohost, the ethyl group occupied the cavity with C—H···π interactions and the molecules were linked into layers to the ab plane by four pairs of C—H···O hydrogen-bonds parallel .
The title molecules are linked into tapes by π-π stacking interactions. The benzene rings Cg1 (C1—C6) in the molecules at (x, y, z) and (1 - x, 1 - y, 1 - z) are strictly parallel, with an interplanar spacing of 3.589 Å, a ring centroid separation of 3.733 Å and a centroid offset of 1.027 Å. In addition, intermolecular C—H···O (Table 1) hydrogen-bonds link molecules into two-dimensional layer structure.