metal-organic compounds
Poly[[bis[μ2-8-ethyl-5-oxo-2-(piperazin-1-yl)-5,8-dihydropyrido[2,3-d]pyrimidine-6-carboxylato]cobalt(II)] dihydrate]
aThe First Affiliated Hospital, Harbin Medical University, Harbin 150001, People's Republic of China, and bThe Department of Health Care Services, Harbin Medical University, Harbin 150086, People's Republic of China
*Correspondence e-mail: shaom_hmu@126.com
The title compound, {[Co(C14H16N5O3)2]·2H2O}n or [Co(ppa)2]·2H2O}n, where ppa denotes the 8-ethyl-5-oxo-2-(piperazin-1-yl)-5,8-dihydropyrido[2,3-d]pyrimidine-6-carboxylate anion, was synthesized under hydrothermal conditions. The CoII atom (site symmetry ) exhibits a distorted trans-CoN2O4 octahedral geometry defined by two monodentate N-bonded and two bidentate O,O′-bonded ppa anions. The extended two-dimensional structure is a square grid, which is consolidated by N—H⋯O hydrogen bonds. The disordered uncoordinated water molecules occupy cavities within the grid.
Related literature
For the manganese and zinc complexes of the ppa anion, see: Huang et al. (2008); Xu et al. (2009). For background to the medicinal uses of pipemidic acid, see: Mizuki et al. (1996).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1998); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536809040185/hb5124sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809040185/hb5124Isup2.hkl
A mixture of Co(CH3COO)2.4H2O (0.25 mmol), Hppa (0.5 mmol), sodium hydroxide (1 mmol) and water (12 ml) was stirred for 40 min in air. The mixture was then transferred to a 23 ml Teflon-lined hydrothermal bomb. The bomb was kept at 433 K for 96 h under autogenous pressure. Upon cooling, pink prisms of (I) were obtained from the reaction mixture.
The carbon-bound H atoms were positioned geometrically (C—H = 0.93–0.97 Å) and were included in the
in the riding model approximation, with U(H) = 1.2Ueq(C). The H on Nitrogen atoms were located in a difference Fourier map, and were refined with a distance restraint of N—H = 0.86 (1) /%A and with Uiso(H) = 1.2Ueq(N).The water H atoms could not be placed due to this disorder.
Pipemidic acid (Hppa, C14H16N5O3, 8-Ethyl-5,8-dihydro-5-oxo-2- (1-piperazinyl)-pyrido(2,3 - d)-pyrimidine-6-carboxylic acid) is member of a class of quinolones used to treat infections (Mizuki et al., 1996). The manganese and cobalt complexes of the ppa anion have been reported (Huang et al., 2008; Xu et al. 2009). The title cobalt(II) complex is reported here(Fig. 1).
The cobalt(II) atom is coordinated by four oxygen atoms and two N atoms from four ppa ligands (two monodentate-N and two O,O-bidentate) to form a square grid propagating in (Fig. 2). The disordered, uncoordinated, water molecules occupy the cavities.
For the manganese and zinc complexe of the ppa anion, see: Huang et al. (2008); Xu et al. (2009). For background to the medicinal uses of pipemidic acid, see: Mizuki et al. (1996).
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1998); data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Co(C14H16N5O3)2]·2H2O | F(000) = 722 |
Mr = 699.58 | Dx = 1.433 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4362 reflections |
a = 6.1093 (3) Å | θ = 2.5–28.2° |
b = 21.3690 (11) Å | µ = 0.60 mm−1 |
c = 12.5944 (6) Å | T = 295 K |
β = 101.254 (1)° | Prism, pink |
V = 1612.58 (14) Å3 | 0.32 × 0.26 × 0.18 mm |
Z = 2 |
Bruker SMART CCD diffractometer | 3894 independent reflections |
Radiation source: fine-focus sealed tube | 3327 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ω scans | θmax = 28.3°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −8→6 |
Tmin = 0.832, Tmax = 0.900 | k = −27→28 |
9807 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.181 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0899P)2 + 1.3252P] where P = (Fo2 + 2Fc2)/3 |
3894 reflections | (Δ/σ)max = 0.003 |
227 parameters | Δρmax = 0.77 e Å−3 |
1 restraint | Δρmin = −0.46 e Å−3 |
[Co(C14H16N5O3)2]·2H2O | V = 1612.58 (14) Å3 |
Mr = 699.58 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.1093 (3) Å | µ = 0.60 mm−1 |
b = 21.3690 (11) Å | T = 295 K |
c = 12.5944 (6) Å | 0.32 × 0.26 × 0.18 mm |
β = 101.254 (1)° |
Bruker SMART CCD diffractometer | 3894 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3327 reflections with I > 2σ(I) |
Tmin = 0.832, Tmax = 0.900 | Rint = 0.029 |
9807 measured reflections |
R[F2 > 2σ(F2)] = 0.060 | 1 restraint |
wR(F2) = 0.181 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.77 e Å−3 |
3894 reflections | Δρmin = −0.46 e Å−3 |
227 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1W | 0.669 (4) | 0.5177 (8) | 0.5335 (9) | 0.255 (11) | 0.50 |
O2W | −0.024 (4) | 0.5581 (10) | 0.4291 (11) | 0.254 (10) | 0.50 |
Co1 | 0.5000 | 0.5000 | 0.0000 | 0.02469 (18) | |
O1 | 0.6496 (3) | 0.57810 (9) | 0.08289 (16) | 0.0324 (4) | |
O2 | 0.1437 (5) | 0.51651 (14) | 0.2499 (2) | 0.0626 (8) | |
N1 | 0.5101 (5) | 0.67072 (13) | 0.3478 (2) | 0.0487 (7) | |
N2 | 0.7758 (5) | 0.74617 (12) | 0.3332 (2) | 0.0390 (6) | |
N3 | 1.0138 (5) | 0.73519 (13) | 0.2023 (2) | 0.0437 (7) | |
N4 | 1.0250 (4) | 0.82327 (11) | 0.3106 (2) | 0.0362 (6) | |
C1 | 0.2840 (5) | 0.52788 (13) | 0.1939 (2) | 0.0328 (6) | |
C2 | 0.4347 (5) | 0.58348 (13) | 0.2241 (2) | 0.0330 (6) | |
C3 | 0.6059 (4) | 0.60347 (12) | 0.1662 (2) | 0.0275 (5) | |
C4 | 0.7269 (5) | 0.65898 (13) | 0.2104 (2) | 0.0318 (6) | |
C5 | 0.9081 (5) | 0.68298 (14) | 0.1695 (3) | 0.0398 (7) | |
H5 | 0.9566 | 0.6603 | 0.1155 | 0.048* | |
C6 | 0.9339 (5) | 0.76685 (13) | 0.2815 (2) | 0.0334 (6) | |
C7 | 0.6763 (5) | 0.69244 (13) | 0.2976 (3) | 0.0364 (6) | |
C8 | 0.3996 (6) | 0.61779 (15) | 0.3104 (3) | 0.0452 (8) | |
H8 | 0.2905 | 0.6036 | 0.3467 | 0.054* | |
C9 | 0.4470 (8) | 0.7043 (2) | 0.4423 (4) | 0.0646 (12) | |
H9A | 0.4693 | 0.7489 | 0.4351 | 0.078* | |
H9B | 0.2902 | 0.6972 | 0.4425 | 0.078* | |
C10 | 0.5781 (12) | 0.6828 (4) | 0.5417 (5) | 0.118 (2) | |
H10A | 0.5474 | 0.6393 | 0.5513 | 0.177* | |
H10B | 0.5417 | 0.7065 | 0.6006 | 0.177* | |
H10C | 0.7335 | 0.6880 | 0.5401 | 0.177* | |
C11 | 1.1614 (6) | 0.85706 (17) | 0.2461 (3) | 0.0478 (8) | |
H11A | 1.0667 | 0.8839 | 0.1943 | 0.057* | |
H11B | 1.2345 | 0.8274 | 0.2062 | 0.057* | |
C12 | 1.3372 (5) | 0.89675 (15) | 0.3196 (3) | 0.0400 (7) | |
H12A | 1.4448 | 0.8690 | 0.3630 | 0.048* | |
H12B | 1.4162 | 0.9216 | 0.2747 | 0.048* | |
C13 | 1.1106 (5) | 0.90153 (13) | 0.4537 (2) | 0.0330 (6) | |
H13A | 1.0424 | 0.9293 | 0.4989 | 0.040* | |
H13B | 1.2078 | 0.8731 | 0.5011 | 0.040* | |
C14 | 0.9295 (5) | 0.86418 (14) | 0.3823 (3) | 0.0353 (6) | |
H14A | 0.8505 | 0.8392 | 0.4270 | 0.042* | |
H14B | 0.8233 | 0.8925 | 0.3395 | 0.042* | |
N5 | 1.2458 (4) | 0.93890 (10) | 0.39246 (19) | 0.0286 (5) | |
O3 | 0.3027 (3) | 0.49641 (8) | 0.11147 (17) | 0.0295 (4) | |
H5N | 1.155 (5) | 0.9660 (14) | 0.350 (2) | 0.044* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1W | 0.52 (4) | 0.180 (13) | 0.073 (8) | −0.084 (17) | 0.063 (13) | 0.045 (8) |
O2W | 0.35 (2) | 0.33 (2) | 0.122 (10) | −0.09 (2) | 0.147 (13) | −0.030 (13) |
Co1 | 0.0276 (3) | 0.0158 (3) | 0.0304 (3) | −0.00028 (17) | 0.0050 (2) | −0.00242 (17) |
O1 | 0.0350 (10) | 0.0243 (9) | 0.0395 (11) | −0.0065 (8) | 0.0113 (8) | −0.0089 (8) |
O2 | 0.0732 (18) | 0.0635 (16) | 0.0631 (17) | −0.0401 (15) | 0.0429 (15) | −0.0297 (14) |
N1 | 0.0630 (18) | 0.0404 (15) | 0.0494 (16) | −0.0222 (14) | 0.0271 (14) | −0.0189 (12) |
N2 | 0.0494 (15) | 0.0296 (12) | 0.0413 (14) | −0.0138 (11) | 0.0167 (11) | −0.0129 (10) |
N3 | 0.0454 (15) | 0.0348 (14) | 0.0556 (16) | −0.0152 (12) | 0.0221 (13) | −0.0200 (12) |
N4 | 0.0390 (13) | 0.0268 (12) | 0.0462 (14) | −0.0093 (10) | 0.0169 (11) | −0.0132 (10) |
C1 | 0.0354 (14) | 0.0250 (13) | 0.0379 (15) | −0.0061 (11) | 0.0068 (12) | −0.0030 (11) |
C2 | 0.0409 (15) | 0.0244 (13) | 0.0343 (14) | −0.0074 (11) | 0.0091 (12) | −0.0035 (10) |
C3 | 0.0309 (13) | 0.0192 (12) | 0.0314 (13) | −0.0023 (10) | 0.0034 (10) | −0.0024 (10) |
C4 | 0.0354 (14) | 0.0241 (12) | 0.0365 (14) | −0.0064 (11) | 0.0082 (11) | −0.0064 (11) |
C5 | 0.0434 (16) | 0.0300 (14) | 0.0498 (18) | −0.0102 (12) | 0.0186 (14) | −0.0180 (13) |
C6 | 0.0338 (14) | 0.0248 (13) | 0.0427 (16) | −0.0058 (11) | 0.0097 (12) | −0.0087 (11) |
C7 | 0.0449 (16) | 0.0269 (13) | 0.0397 (15) | −0.0099 (12) | 0.0139 (13) | −0.0087 (11) |
C8 | 0.057 (2) | 0.0352 (16) | 0.0486 (18) | −0.0198 (15) | 0.0238 (16) | −0.0107 (14) |
C9 | 0.080 (3) | 0.058 (2) | 0.065 (3) | −0.030 (2) | 0.035 (2) | −0.025 (2) |
C10 | 0.121 (5) | 0.155 (7) | 0.082 (4) | −0.025 (5) | 0.028 (4) | −0.020 (4) |
C11 | 0.055 (2) | 0.0429 (18) | 0.0501 (19) | −0.0253 (15) | 0.0221 (16) | −0.0187 (15) |
C12 | 0.0370 (15) | 0.0326 (15) | 0.0537 (18) | −0.0113 (12) | 0.0167 (13) | −0.0110 (13) |
C13 | 0.0334 (14) | 0.0266 (13) | 0.0402 (15) | −0.0067 (11) | 0.0104 (12) | −0.0072 (11) |
C14 | 0.0290 (13) | 0.0276 (13) | 0.0507 (17) | −0.0062 (11) | 0.0114 (12) | −0.0119 (12) |
N5 | 0.0283 (11) | 0.0208 (10) | 0.0362 (12) | −0.0017 (8) | 0.0053 (9) | −0.0010 (9) |
O3 | 0.0337 (10) | 0.0199 (9) | 0.0353 (11) | −0.0035 (7) | 0.0072 (8) | −0.0029 (7) |
Co1—O3i | 2.022 (2) | C4—C5 | 1.405 (4) |
Co1—O3 | 2.022 (2) | C5—H5 | 0.9300 |
Co1—O1i | 2.0829 (18) | C8—H8 | 0.9300 |
Co1—O1 | 2.0829 (18) | C9—C10 | 1.425 (9) |
Co1—N5ii | 2.265 (2) | C9—H9A | 0.9700 |
Co1—N5iii | 2.265 (2) | C9—H9B | 0.9700 |
O1—C3 | 1.255 (3) | C10—H10A | 0.9600 |
O2—C1 | 1.235 (4) | C10—H10B | 0.9600 |
N1—C8 | 1.354 (4) | C10—H10C | 0.9600 |
N1—C7 | 1.376 (4) | C11—C12 | 1.530 (4) |
N1—C9 | 1.503 (5) | C11—H11A | 0.9700 |
N2—C7 | 1.335 (4) | C11—H11B | 0.9700 |
N2—C6 | 1.341 (4) | C12—N5 | 1.471 (4) |
N3—C5 | 1.315 (4) | C12—H12A | 0.9700 |
N3—C6 | 1.371 (4) | C12—H12B | 0.9700 |
N4—C6 | 1.348 (3) | C13—N5 | 1.471 (3) |
N4—C14 | 1.459 (3) | C13—C14 | 1.510 (4) |
N4—C11 | 1.462 (4) | C13—H13A | 0.9700 |
C1—O3 | 1.261 (3) | C13—H13B | 0.9700 |
C1—C2 | 1.506 (4) | C14—H14A | 0.9700 |
C2—C8 | 1.362 (4) | C14—H14B | 0.9700 |
C2—C3 | 1.451 (4) | N5—Co1iv | 2.265 (2) |
C3—C4 | 1.450 (4) | N5—H5N | 0.900 (10) |
C4—C7 | 1.396 (4) | ||
O3i—Co1—O3 | 180.0 | N1—C8—H8 | 117.2 |
O3i—Co1—O1i | 86.86 (7) | C2—C8—H8 | 117.2 |
O3—Co1—O1i | 93.14 (7) | C10—C9—N1 | 110.8 (5) |
O3i—Co1—O1 | 93.14 (7) | C10—C9—H9A | 109.5 |
O3—Co1—O1 | 86.86 (7) | N1—C9—H9A | 109.5 |
O1i—Co1—O1 | 180.0 | C10—C9—H9B | 109.5 |
O3i—Co1—N5ii | 90.28 (8) | N1—C9—H9B | 109.5 |
O3—Co1—N5ii | 89.72 (8) | H9A—C9—H9B | 108.1 |
O1i—Co1—N5ii | 91.18 (8) | C9—C10—H10A | 109.5 |
O1—Co1—N5ii | 88.82 (8) | C9—C10—H10B | 109.5 |
O3i—Co1—N5iii | 89.72 (8) | H10A—C10—H10B | 109.5 |
O3—Co1—N5iii | 90.28 (8) | C9—C10—H10C | 109.5 |
O1i—Co1—N5iii | 88.82 (8) | H10A—C10—H10C | 109.5 |
O1—Co1—N5iii | 91.18 (8) | H10B—C10—H10C | 109.5 |
N5ii—Co1—N5iii | 180.0 | N4—C11—C12 | 110.3 (3) |
C3—O1—Co1 | 128.37 (17) | N4—C11—H11A | 109.6 |
C8—N1—C7 | 119.0 (3) | C12—C11—H11A | 109.6 |
C8—N1—C9 | 119.1 (3) | N4—C11—H11B | 109.6 |
C7—N1—C9 | 121.9 (3) | C12—C11—H11B | 109.6 |
C7—N2—C6 | 116.4 (2) | H11A—C11—H11B | 108.1 |
C5—N3—C6 | 115.1 (3) | N5—C12—C11 | 114.2 (3) |
C6—N4—C14 | 120.7 (2) | N5—C12—H12A | 108.7 |
C6—N4—C11 | 122.7 (2) | C11—C12—H12A | 108.7 |
C14—N4—C11 | 112.8 (2) | N5—C12—H12B | 108.7 |
O2—C1—O3 | 123.3 (3) | C11—C12—H12B | 108.7 |
O2—C1—C2 | 118.0 (3) | H12A—C12—H12B | 107.6 |
O3—C1—C2 | 118.6 (2) | N5—C13—C14 | 113.3 (2) |
C8—C2—C3 | 118.9 (3) | N5—C13—H13A | 108.9 |
C8—C2—C1 | 116.3 (3) | C14—C13—H13A | 108.9 |
C3—C2—C1 | 124.8 (2) | N5—C13—H13B | 108.9 |
O1—C3—C4 | 119.9 (2) | C14—C13—H13B | 108.9 |
O1—C3—C2 | 125.8 (2) | H13A—C13—H13B | 107.7 |
C4—C3—C2 | 114.3 (2) | N4—C14—C13 | 110.5 (2) |
C7—C4—C5 | 114.4 (2) | N4—C14—H14A | 109.5 |
C7—C4—C3 | 123.1 (3) | C13—C14—H14A | 109.5 |
C5—C4—C3 | 122.5 (3) | N4—C14—H14B | 109.5 |
N3—C5—C4 | 124.7 (3) | C13—C14—H14B | 109.5 |
N3—C5—H5 | 117.7 | H14A—C14—H14B | 108.1 |
C4—C5—H5 | 117.7 | C13—N5—C12 | 108.4 (2) |
N2—C6—N4 | 117.5 (2) | C13—N5—Co1iv | 112.89 (17) |
N2—C6—N3 | 125.7 (3) | C12—N5—Co1iv | 115.23 (17) |
N4—C6—N3 | 116.9 (3) | C13—N5—H5N | 108 (2) |
N2—C7—N1 | 117.7 (3) | C12—N5—H5N | 107 (2) |
N2—C7—C4 | 123.3 (3) | Co1iv—N5—H5N | 105 (2) |
N1—C7—C4 | 119.0 (3) | C1—O3—Co1 | 135.54 (18) |
N1—C8—C2 | 125.6 (3) | ||
O3i—Co1—O1—C3 | −179.8 (2) | C8—N1—C7—N2 | 177.2 (3) |
O3—Co1—O1—C3 | 0.2 (2) | C9—N1—C7—N2 | −2.4 (5) |
N5ii—Co1—O1—C3 | −89.6 (2) | C8—N1—C7—C4 | −0.5 (5) |
N5iii—Co1—O1—C3 | 90.4 (2) | C9—N1—C7—C4 | 179.9 (4) |
O2—C1—C2—C8 | −1.4 (5) | C5—C4—C7—N2 | 6.3 (5) |
O3—C1—C2—C8 | 176.6 (3) | C3—C4—C7—N2 | −174.7 (3) |
O2—C1—C2—C3 | −179.3 (3) | C5—C4—C7—N1 | −176.2 (3) |
O3—C1—C2—C3 | −1.3 (4) | C3—C4—C7—N1 | 2.8 (5) |
Co1—O1—C3—C4 | −178.49 (19) | C7—N1—C8—C2 | −1.4 (6) |
Co1—O1—C3—C2 | −0.6 (4) | C9—N1—C8—C2 | 178.2 (4) |
C8—C2—C3—O1 | −176.7 (3) | C3—C2—C8—N1 | 0.9 (6) |
C1—C2—C3—O1 | 1.2 (5) | C1—C2—C8—N1 | −177.2 (3) |
C8—C2—C3—C4 | 1.3 (4) | C8—N1—C9—C10 | 91.4 (5) |
C1—C2—C3—C4 | 179.2 (3) | C7—N1—C9—C10 | −89.0 (5) |
O1—C3—C4—C7 | 175.0 (3) | C6—N4—C11—C12 | −149.0 (3) |
C2—C3—C4—C7 | −3.1 (4) | C14—N4—C11—C12 | 52.8 (4) |
O1—C3—C4—C5 | −6.0 (4) | N4—C11—C12—N5 | −53.2 (4) |
C2—C3—C4—C5 | 175.8 (3) | C6—N4—C14—C13 | 146.4 (3) |
C6—N3—C5—C4 | −0.5 (5) | C11—N4—C14—C13 | −54.9 (4) |
C7—C4—C5—N3 | −5.4 (5) | N5—C13—C14—N4 | 56.7 (3) |
C3—C4—C5—N3 | 175.5 (3) | C14—C13—N5—C12 | −55.3 (3) |
C7—N2—C6—N4 | 175.2 (3) | C14—C13—N5—Co1iv | 175.84 (18) |
C7—N2—C6—N3 | −5.8 (5) | C11—C12—N5—C13 | 53.7 (4) |
C14—N4—C6—N2 | −9.8 (4) | C11—C12—N5—Co1iv | −178.7 (2) |
C11—N4—C6—N2 | −166.4 (3) | O2—C1—O3—Co1 | 178.9 (3) |
C14—N4—C6—N3 | 171.1 (3) | C2—C1—O3—Co1 | 1.0 (4) |
C11—N4—C6—N3 | 14.5 (5) | O1i—Co1—O3—C1 | 179.6 (3) |
C5—N3—C6—N2 | 6.6 (5) | O1—Co1—O3—C1 | −0.4 (3) |
C5—N3—C6—N4 | −174.4 (3) | N5ii—Co1—O3—C1 | 88.4 (3) |
C6—N2—C7—N1 | −178.7 (3) | N5iii—Co1—O3—C1 | −91.6 (3) |
C6—N2—C7—C4 | −1.1 (5) |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+2, y−1/2, −z+1/2; (iii) x−1, −y+3/2, z−1/2; (iv) −x+2, y+1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5N···O2v | 0.90 (1) | 2.28 (1) | 3.156 (4) | 165 (3) |
Symmetry code: (v) −x+1, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Co(C14H16N5O3)2]·2H2O |
Mr | 699.58 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 295 |
a, b, c (Å) | 6.1093 (3), 21.3690 (11), 12.5944 (6) |
β (°) | 101.254 (1) |
V (Å3) | 1612.58 (14) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.60 |
Crystal size (mm) | 0.32 × 0.26 × 0.18 |
Data collection | |
Diffractometer | Bruker SMART CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.832, 0.900 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9807, 3894, 3327 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.181, 1.12 |
No. of reflections | 3894 |
No. of parameters | 227 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.77, −0.46 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Co1—O3 | 2.022 (2) | Co1—N5i | 2.265 (2) |
Co1—O1 | 2.0829 (18) |
Symmetry code: (i) −x+2, y−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N5—H5N···O2ii | 0.900 (10) | 2.278 (14) | 3.156 (4) | 165 (3) |
Symmetry code: (ii) −x+1, y+1/2, −z+1/2. |
Acknowledgements
The authors acknowledge financial support from the Foundation for Youth of Heilongjiang Province (grant No. QC07C97).
References
Bruker (1998). SMART and SAINT-Plus. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Huang, J., Hu, W.-P. & An, Z. (2008). Acta Cryst. E64, m547. Web of Science CSD CrossRef IUCr Journals Google Scholar
Mizuki, Y., Fujiwara, I. & Yamaguchi, T. (1996). J. Antimicrob. Chemother. 37 (Suppl. A), 41-45. Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Xu, W., Zhu, D.-S., Song, X.-D. & An, Z. (2009). Acta Cryst. E65, m1223. Web of Science CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pipemidic acid (Hppa, C14H16N5O3, 8-Ethyl-5,8-dihydro-5-oxo-2- (1-piperazinyl)-pyrido(2,3 - d)-pyrimidine-6-carboxylic acid) is member of a class of quinolones used to treat infections (Mizuki et al., 1996). The manganese and cobalt complexes of the ppa anion have been reported (Huang et al., 2008; Xu et al. 2009). The title cobalt(II) complex is reported here(Fig. 1).
The cobalt(II) atom is coordinated by four oxygen atoms and two N atoms from four ppa ligands (two monodentate-N and two O,O-bidentate) to form a square grid propagating in (Fig. 2). The disordered, uncoordinated, water molecules occupy the cavities.