organic compounds
2,2,6-Trimethyl-5-[2-(4-methylphenyl)ethynyl]-4H-1,3-dioxin-4-one
aBioMat–Physics Department, Universidade Estadual Paulista Júlio de Mesquita Filho, UNESP, 17033-360 Bauru, SP, Brazil, bDepartment of Chemistry, Universidade Federal de São Carlos, 13565-905 São Carlos, SP, Brazil, cDepartamento de Farmácia, Faculdade de Ciências Farmacêuticas, Universidade de São Paulo, São Paulo-SP, Brazil, and dDepartment of Chemistry, University of Malaya, Kuala Lumpur 50603, Malaysia
*Correspondence e-mail: ignez@fc.unesp.br
The 1,3-dioxin-4-one ring in the title compound, C16H16O3, is in a half-boat conformation with the quaternary O—C(CH3)2—O atom lying 0.546 (1) Å out of the plane defined by the remaining five atoms. The is consolidated by C—H⋯O contacts that lead to supramolecular layers.
Related literature
For background to potassium organotrifluoroborate salts in organic synthesis, see: Caracelli et al. (2007); Stefani et al. (2007); Vieira et al. (2008). For related structures, see: Le & Pagenkopf (2004); Zukerman-Schpector et al. (2009). For see: Cremer & Pople (1975); Iulek & Zukerman-Schpector (1997).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
https://doi.org/10.1107/S1600536809041002/hg2577sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809041002/hg2577Isup2.hkl
The treatment of potassium p-tolylethynyltrifluoroborate (244 mg, 1.1 equiv) with K2CO3 (2 mmol, 276 mg) in 3 ml of degassed THF water (2:1) under an inert atmosphere, followed by the addition of PdCl2 (3.5 mg, 2.0 mol%) and 2,2,6-trimethyl-5-iodo-1,3-dioxin-4-one 1 (1.0 equiv) with vigorous stirring for 3 h at 353 K, afforded compound (I) in 72% yield after
Single crystals were obtained by slow evaporation from ethyl acetate.The H atoms were positioned with idealized geometry using a riding model with C—H = 0.95–0.98 Å, and with Uiso set to 1.2 times (1.5 for methyl) Ueq(parent atom).
The potential use of potassium organotrifluoroborate salts as intermediates in organic synthesis motivates continuing interest (Caracelli et al., 2007; Stefani et al., 2007; Vieira et al. 2008). As a part of on-going studies, the
of the title compound, (I), is reported herein, which was obtained by the Suzuki-Miyaura palladium-catalyzed cross-coupling reaction of 5-iodo-1,3-dioxin-4-one and a potassium alkynyltrifluoroborate salt.The molecular structure of (I), Fig. 1, shows the 1,3-dioxin-4-one ring to adopt a half-boat conformation with the C12 atom being displaced 0.546 (1) Å out of the plane defined by the remaining five atoms. The ring-puckering parameters are q2 = 0.346 (2) Å, q3 = 0.182 (2) Å, Q = 0.391 (2) Å, and φ2 = 299.3 (3)° (Cremer & Pople, 1975; Iulek & Zukerman-Schpector, 1997). A similar conformation has been observed in related structures containing the 1,3-dioxin-4-one ring (Le & Pagenkopf, 2004; Zukerman-Schpector et al., 2009). The presence of C—H···O contacts involving the bifurcated carbonyl-O1 atom interacting with two different molecules leads to a layer architecture in the ab plane, Fig. 2. These stack along the c direction to form the crystal structure.
For background on potassium organotrifluoroborate salts in organic synthesis, see: Caracelli et al. (2007); Stefani et al. (2007); Vieira et al. (2008). For related structures, see: Le & Pagenkopf (2004); Zukerman-Schpector et al. (2009). For
see: Cremer & Pople (1975); Iulek & Zukerman-Schpector (1997).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: WinGX (Farrugia, 1999).C16H16O3 | F(000) = 1088 |
Mr = 256.29 | Dx = 1.258 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 4513 reflections |
a = 14.8486 (15) Å | θ = 2.7–23.7° |
b = 9.621 (1) Å | µ = 0.09 mm−1 |
c = 18.9438 (18) Å | T = 100 K |
V = 2706.3 (5) Å3 | Plate, colourless |
Z = 8 | 0.20 × 0.10 × 0.05 mm |
Bruker SMART APEXII diffractometer | 2382 independent reflections |
Radiation source: sealed tube | 1727 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.083 |
φ and ω scans | θmax = 25.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −17→17 |
Tmin = 0.911, Tmax = 1 | k = −8→11 |
32445 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0366P)2 + 1.3345P] where P = (Fo2 + 2Fc2)/3 |
2382 reflections | (Δ/σ)max < 0.001 |
174 parameters | Δρmax = 0.19 e Å−3 |
0 restraints | Δρmin = −0.17 e Å−3 |
C16H16O3 | V = 2706.3 (5) Å3 |
Mr = 256.29 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 14.8486 (15) Å | µ = 0.09 mm−1 |
b = 9.621 (1) Å | T = 100 K |
c = 18.9438 (18) Å | 0.20 × 0.10 × 0.05 mm |
Bruker SMART APEXII diffractometer | 2382 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1727 reflections with I > 2σ(I) |
Tmin = 0.911, Tmax = 1 | Rint = 0.083 |
32445 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.19 e Å−3 |
2382 reflections | Δρmin = −0.17 e Å−3 |
174 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.44450 (8) | −0.15682 (13) | 0.61722 (7) | 0.0282 (3) | |
O2 | 0.33370 (8) | −0.01835 (13) | 0.58506 (6) | 0.0238 (3) | |
O3 | 0.36181 (8) | 0.21026 (13) | 0.54478 (6) | 0.0225 (3) | |
C1 | 1.01927 (13) | −0.0304 (3) | 0.71504 (11) | 0.0403 (6) | |
H1A | 1.0539 | −0.0704 | 0.6760 | 0.060* | |
H1B | 1.0211 | −0.0935 | 0.7556 | 0.060* | |
H1C | 1.0454 | 0.0594 | 0.7284 | 0.060* | |
C2 | 0.92289 (12) | −0.0097 (2) | 0.69219 (9) | 0.0261 (5) | |
C3 | 0.85526 (12) | −0.0999 (2) | 0.71392 (9) | 0.0260 (4) | |
H3 | 0.8698 | −0.1753 | 0.7443 | 0.031* | |
C4 | 0.76733 (12) | −0.08212 (19) | 0.69223 (9) | 0.0234 (4) | |
H4 | 0.7221 | −0.1442 | 0.7084 | 0.028* | |
C5 | 0.74413 (12) | 0.02656 (19) | 0.64657 (8) | 0.0208 (4) | |
C6 | 0.81219 (12) | 0.1170 (2) | 0.62428 (10) | 0.0254 (4) | |
H6 | 0.7982 | 0.1909 | 0.5929 | 0.030* | |
C7 | 0.89939 (12) | 0.0998 (2) | 0.64750 (10) | 0.0273 (5) | |
H7 | 0.9444 | 0.1637 | 0.6328 | 0.033* | |
C8 | 0.65282 (13) | 0.0444 (2) | 0.62380 (9) | 0.0230 (4) | |
C9 | 0.57567 (12) | 0.06035 (19) | 0.60694 (9) | 0.0226 (4) | |
C10 | 0.48224 (12) | 0.07787 (19) | 0.59006 (9) | 0.0216 (4) | |
C11 | 0.42172 (12) | −0.0405 (2) | 0.60048 (9) | 0.0222 (4) | |
C12 | 0.30049 (12) | 0.12229 (19) | 0.58355 (10) | 0.0218 (4) | |
C13 | 0.45014 (12) | 0.19506 (19) | 0.55944 (9) | 0.0213 (4) | |
C14 | 0.28969 (12) | 0.1777 (2) | 0.65791 (9) | 0.0259 (5) | |
H14A | 0.2478 | 0.1183 | 0.6841 | 0.039* | |
H14B | 0.2659 | 0.2727 | 0.6561 | 0.039* | |
H14C | 0.3483 | 0.1781 | 0.6816 | 0.039* | |
C15 | 0.21469 (12) | 0.1198 (2) | 0.54194 (10) | 0.0278 (5) | |
H15A | 0.1704 | 0.0612 | 0.5661 | 0.042* | |
H15B | 0.2265 | 0.0820 | 0.4948 | 0.042* | |
H15C | 0.1910 | 0.2145 | 0.5377 | 0.042* | |
C16 | 0.50431 (13) | 0.3156 (2) | 0.53576 (9) | 0.0258 (4) | |
H16A | 0.5116 | 0.3120 | 0.4844 | 0.039* | |
H16B | 0.5636 | 0.3126 | 0.5584 | 0.039* | |
H16C | 0.4735 | 0.4019 | 0.5489 | 0.039* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0285 (7) | 0.0213 (7) | 0.0350 (8) | 0.0050 (6) | −0.0016 (6) | −0.0007 (6) |
O2 | 0.0197 (7) | 0.0194 (7) | 0.0322 (7) | 0.0015 (6) | −0.0015 (6) | −0.0009 (6) |
O3 | 0.0202 (7) | 0.0228 (7) | 0.0244 (6) | 0.0018 (6) | −0.0003 (5) | 0.0029 (6) |
C1 | 0.0234 (12) | 0.0672 (17) | 0.0302 (11) | 0.0004 (11) | −0.0027 (9) | −0.0092 (11) |
C2 | 0.0218 (10) | 0.0367 (12) | 0.0199 (9) | 0.0010 (9) | −0.0010 (8) | −0.0103 (8) |
C3 | 0.0266 (11) | 0.0284 (11) | 0.0229 (9) | 0.0036 (9) | −0.0020 (8) | −0.0008 (8) |
C4 | 0.0245 (11) | 0.0238 (10) | 0.0220 (9) | −0.0055 (9) | 0.0021 (8) | −0.0013 (8) |
C5 | 0.0201 (9) | 0.0243 (10) | 0.0179 (8) | 0.0008 (8) | 0.0006 (7) | −0.0051 (8) |
C6 | 0.0283 (11) | 0.0233 (11) | 0.0246 (10) | −0.0004 (9) | 0.0033 (8) | 0.0001 (8) |
C7 | 0.0231 (10) | 0.0316 (11) | 0.0271 (10) | −0.0089 (9) | 0.0074 (8) | −0.0065 (9) |
C8 | 0.0242 (11) | 0.0242 (11) | 0.0206 (9) | −0.0004 (8) | 0.0019 (8) | −0.0007 (8) |
C9 | 0.0235 (11) | 0.0244 (10) | 0.0200 (9) | 0.0003 (8) | 0.0028 (8) | 0.0003 (8) |
C10 | 0.0209 (10) | 0.0247 (11) | 0.0193 (9) | 0.0024 (8) | 0.0019 (7) | −0.0021 (8) |
C11 | 0.0231 (10) | 0.0232 (11) | 0.0202 (9) | 0.0055 (8) | −0.0008 (7) | −0.0029 (8) |
C12 | 0.0195 (10) | 0.0197 (10) | 0.0262 (10) | 0.0024 (8) | 0.0021 (8) | 0.0020 (8) |
C13 | 0.0219 (10) | 0.0255 (11) | 0.0165 (8) | 0.0018 (8) | 0.0012 (7) | −0.0041 (8) |
C14 | 0.0243 (10) | 0.0272 (11) | 0.0262 (10) | 0.0036 (9) | 0.0017 (8) | −0.0001 (8) |
C15 | 0.0222 (10) | 0.0287 (11) | 0.0325 (10) | 0.0020 (9) | −0.0023 (8) | −0.0028 (9) |
C16 | 0.0266 (10) | 0.0257 (11) | 0.0250 (9) | −0.0006 (9) | 0.0034 (8) | 0.0004 (8) |
O1—C11 | 1.211 (2) | C6—H6 | 0.9500 |
O2—C11 | 1.356 (2) | C7—H7 | 0.9500 |
O2—C12 | 1.440 (2) | C8—C9 | 1.199 (2) |
O3—C13 | 1.349 (2) | C9—C10 | 1.434 (3) |
O3—C12 | 1.444 (2) | C10—C13 | 1.355 (3) |
C1—C2 | 1.508 (3) | C10—C11 | 1.464 (3) |
C1—H1A | 0.9800 | C12—C15 | 1.498 (2) |
C1—H1B | 0.9800 | C12—C14 | 1.515 (2) |
C1—H1C | 0.9800 | C13—C16 | 1.481 (3) |
C2—C3 | 1.390 (3) | C14—H14A | 0.9800 |
C2—C7 | 1.395 (3) | C14—H14B | 0.9800 |
C3—C4 | 1.379 (2) | C14—H14C | 0.9800 |
C3—H3 | 0.9500 | C15—H15A | 0.9800 |
C4—C5 | 1.400 (2) | C15—H15B | 0.9800 |
C4—H4 | 0.9500 | C15—H15C | 0.9800 |
C5—C6 | 1.399 (3) | C16—H16A | 0.9800 |
C5—C8 | 1.433 (3) | C16—H16B | 0.9800 |
C6—C7 | 1.378 (3) | C16—H16C | 0.9800 |
C11—O2—C12 | 118.82 (14) | O1—C11—O2 | 118.10 (17) |
C13—O3—C12 | 116.42 (14) | O1—C11—C10 | 125.63 (17) |
C2—C1—H1A | 109.5 | O2—C11—C10 | 116.10 (16) |
C2—C1—H1B | 109.5 | O2—C12—O3 | 110.17 (13) |
H1A—C1—H1B | 109.5 | O2—C12—C15 | 106.64 (15) |
C2—C1—H1C | 109.5 | O3—C12—C15 | 106.15 (14) |
H1A—C1—H1C | 109.5 | O2—C12—C14 | 110.40 (15) |
H1B—C1—H1C | 109.5 | O3—C12—C14 | 109.47 (15) |
C3—C2—C7 | 118.06 (17) | C15—C12—C14 | 113.88 (15) |
C3—C2—C1 | 121.20 (19) | O3—C13—C10 | 121.37 (17) |
C7—C2—C1 | 120.74 (18) | O3—C13—C16 | 112.39 (16) |
C4—C3—C2 | 121.19 (18) | C10—C13—C16 | 126.19 (16) |
C4—C3—H3 | 119.4 | C12—C14—H14A | 109.5 |
C2—C3—H3 | 119.4 | C12—C14—H14B | 109.5 |
C3—C4—C5 | 120.65 (17) | H14A—C14—H14B | 109.5 |
C3—C4—H4 | 119.7 | C12—C14—H14C | 109.5 |
C5—C4—H4 | 119.7 | H14A—C14—H14C | 109.5 |
C6—C5—C4 | 118.24 (17) | H14B—C14—H14C | 109.5 |
C6—C5—C8 | 121.20 (17) | C12—C15—H15A | 109.5 |
C4—C5—C8 | 120.56 (17) | C12—C15—H15B | 109.5 |
C7—C6—C5 | 120.52 (18) | H15A—C15—H15B | 109.5 |
C7—C6—H6 | 119.7 | C12—C15—H15C | 109.5 |
C5—C6—H6 | 119.7 | H15A—C15—H15C | 109.5 |
C6—C7—C2 | 121.31 (18) | H15B—C15—H15C | 109.5 |
C6—C7—H7 | 119.3 | C13—C16—H16A | 109.5 |
C2—C7—H7 | 119.3 | C13—C16—H16B | 109.5 |
C9—C8—C5 | 177.91 (18) | H16A—C16—H16B | 109.5 |
C8—C9—C10 | 177.35 (19) | C13—C16—H16C | 109.5 |
C13—C10—C9 | 122.26 (17) | H16A—C16—H16C | 109.5 |
C13—C10—C11 | 119.30 (16) | H16B—C16—H16C | 109.5 |
C9—C10—C11 | 118.19 (16) | ||
C7—C2—C3—C4 | −0.1 (3) | C13—C10—C11—O2 | −6.8 (2) |
C1—C2—C3—C4 | −179.09 (17) | C9—C10—C11—O2 | 178.82 (15) |
C2—C3—C4—C5 | 1.1 (3) | C11—O2—C12—O3 | 45.9 (2) |
C3—C4—C5—C6 | −0.7 (3) | C11—O2—C12—C15 | 160.69 (14) |
C3—C4—C5—C8 | 179.67 (17) | C11—O2—C12—C14 | −75.12 (19) |
C4—C5—C6—C7 | −0.7 (3) | C13—O3—C12—O2 | −45.2 (2) |
C8—C5—C6—C7 | 178.97 (17) | C13—O3—C12—C15 | −160.28 (15) |
C5—C6—C7—C2 | 1.7 (3) | C13—O3—C12—C14 | 76.39 (18) |
C3—C2—C7—C6 | −1.2 (3) | C12—O3—C13—C10 | 20.6 (2) |
C1—C2—C7—C6 | 177.71 (18) | C12—O3—C13—C16 | −161.70 (14) |
C12—O2—C11—O1 | 163.63 (15) | C9—C10—C13—O3 | −179.15 (15) |
C12—O2—C11—C10 | −20.8 (2) | C11—C10—C13—O3 | 6.7 (2) |
C13—C10—C11—O1 | 168.37 (17) | C9—C10—C13—C16 | 3.5 (3) |
C9—C10—C11—O1 | −6.0 (3) | C11—C10—C13—C16 | −170.62 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16A···O1i | 0.98 | 2.52 | 3.363 (2) | 144 |
C7—H7···O1ii | 0.95 | 2.41 | 3.344 (2) | 169 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+3/2, y+1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C16H16O3 |
Mr | 256.29 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 14.8486 (15), 9.621 (1), 18.9438 (18) |
V (Å3) | 2706.3 (5) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.20 × 0.10 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART APEXII |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.911, 1 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 32445, 2382, 1727 |
Rint | 0.083 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.096, 1.04 |
No. of reflections | 2382 |
No. of parameters | 174 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.19, −0.17 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16A···O1i | 0.98 | 2.52 | 3.363 (2) | 144 |
C7—H7···O1ii | 0.95 | 2.41 | 3.344 (2) | 169 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+3/2, y+1/2, z. |
Acknowledgements
The authors thank FAPESP [grant Nos. 07/59404-2 (HAS) and 08/02531-5 (JZ-S)], CNPq [grant Nos. 472237/2008-0 (IC), 300613/2007 (HAS), 307121/2006-0 (JZ-S)] and CAPES for financial support.
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Zukerman-Schpector, J., Vieira, A. S., Stefani, H. A. & Tiekink, E. R. T. (2009). Acta Cryst. E65, o1694. Web of Science CSD CrossRef IUCr Journals Google Scholar
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The potential use of potassium organotrifluoroborate salts as intermediates in organic synthesis motivates continuing interest (Caracelli et al., 2007; Stefani et al., 2007; Vieira et al. 2008). As a part of on-going studies, the crystal structure of the title compound, (I), is reported herein, which was obtained by the Suzuki-Miyaura palladium-catalyzed cross-coupling reaction of 5-iodo-1,3-dioxin-4-one and a potassium alkynyltrifluoroborate salt.
The molecular structure of (I), Fig. 1, shows the 1,3-dioxin-4-one ring to adopt a half-boat conformation with the C12 atom being displaced 0.546 (1) Å out of the plane defined by the remaining five atoms. The ring-puckering parameters are q2 = 0.346 (2) Å, q3 = 0.182 (2) Å, Q = 0.391 (2) Å, and φ2 = 299.3 (3)° (Cremer & Pople, 1975; Iulek & Zukerman-Schpector, 1997). A similar conformation has been observed in related structures containing the 1,3-dioxin-4-one ring (Le & Pagenkopf, 2004; Zukerman-Schpector et al., 2009). The presence of C—H···O contacts involving the bifurcated carbonyl-O1 atom interacting with two different molecules leads to a layer architecture in the ab plane, Fig. 2. These stack along the c direction to form the crystal structure.