organic compounds
(E)-3-(2,6-Dichlorobenzylidene)indolin-2-one
aDepartment of Chemistry, Southern Methodist University, Dallas, TX 75275, USA
*Correspondence e-mail: hzhang@smu.edu
There are two independent molecules in the 15H9Cl2NO. The dihedral angles between the oxindolyl and dichlorophenyl rings are essentially identical for the two independent molecules [63.4 (1) and 63.2 (1)°]. Dimers linked by amide–carbonyl N—H⋯O hydrogen bonds are formed from each symmetry-independent molecule and the respective symmetry equivalent created by inversion.
of the title compound, CRelated literature
For the syntheses and structures of related compounds, see: Ankati et al. (2009); Zhang et al. (2008, 2009a,b,c). For the pharmacological properties of 3-(substituted-benzylidene)-1,3-dihydro-indolin derivatives, see: Andreani et al. (2006); Balderamos et al. (2008); Johnson et al. (2005); Olgen et al. (2005, 2007); Sun et al. (2003)
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2009).
Supporting information
https://doi.org/10.1107/S1600536809043487/im2152sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809043487/im2152Isup2.hkl
The title compound was synthesized by the condensation of 2,6-dichlorobenzaldehyde (1 mmol) with 2-oxindole (1 mmol) in ethanol (10 ml) in the presence of catalytic amount of piperidine (0.1 mmol) with a yield of 83%. After refluxing for 3 hr, the reaction mixture was left to stand overnight. The resulting crude solid was filtered, washed with cold ethanol (10 ml) and dried. Red single crystals of the compound suitable for X-ray
obtained by recrystallization from ethanol.All H atom were placed in calculated positions and included in the final cycles of
using a riding model, with distances N–H = 0.86 Å and C–H = 0.93 Å, and displacement parameters Uĩso(H) = 1.2Ueq(N,C).3-(Substituted-benzylidene)-1,3-dihydro-indolin derivatives show a variety of pharmacologically important properties such as being protein and tyrosine kinase inhibitors (Olgen et al., 2005, 2007; Sun et al., 2003) as well as antitumor (Andreani et al., 2006) and neuroprotective agents (Johnson et al., 2005). We have designed, synthesized and crystallized several 3-substituted indolin-2-one derivatives to study their neuroprotective properties (Balderamos et al., 2008 and Ankati et al., 2009). In relation of structure-activity of 3-substituted indolin-2-ones, the title compound was synthesized and its
is reported here. It is similar to the structure of 5-bromo substituted (E)-5-bromo-3-(2,6-dichlorobenzylidene)indolin-2-one (Zhang et al. 2009c). The X-ray shows the title compound to show an E configuration.For studying the biological properties a series of 3-substituted indolin-2-one derivatives have been synthesized in our lab and their neuroprotective activities have been tested (Balderamos et al. 2008). As a part of our research on the relationship between the biological activities and solid structures a couple of crystal structures of the derivatives have been carried out (Zhang, et al., 2008, 2009a, 2009b, 2009c). The title compound consists of an oxindolyl and a dichlorophenyl unit (Fig 1). The dihedral angles between the two aromatic rings are basically identical for the two independent molecules and measure to 63.4°(1) and 63.2°(1), respectively. The
revealed that intermolecular H-bonds (Table 1), linking two symmetry related inverted molecules, form an eight membered dimeric ring system (Fig 2).For the syntheses and structures of related compounds, see: Ankati et al. (2009); Zhang et al. (2008, 2009a,b,c). For the pharmacological properties of 3-(substituted-benzylidene)-1,3-dihydro-indolin derivatives, see: Andreani et al. (2006); Balderamos et al. (2008); Johnson et al. (2005); Olgen et al. (2005, 2007); Sun et al. (2003)
Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and publCIF (Westrip, 2009).C15H9Cl2NO | Z = 4 |
Mr = 290.13 | F(000) = 592 |
Triclinic, P1 | Dx = 1.456 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.3908 (5) Å | Cell parameters from 6257 reflections |
b = 12.6079 (7) Å | θ = 2.8–27.9° |
c = 12.7635 (7) Å | µ = 0.48 mm−1 |
α = 99.334 (1)° | T = 296 K |
β = 91.188 (1)° | Plates, orange |
γ = 96.338 (1)° | 0.35 × 0.17 × 0.08 mm |
V = 1323.2 (1) Å3 |
Bruker APEX diffractometer | 6459 independent reflections |
Radiation source: fine-focus sealed tube | 4669 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
Detector resolution: 83.33 pixels mm-1 | θmax = 28.3°, θmin = 1.6° |
φ and ω scans | h = −11→11 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −16→16 |
Tmin = 0.849, Tmax = 0.964 | l = −16→16 |
16946 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0619P)2 + 0.2428P] where P = (Fo2 + 2Fc2)/3 |
6459 reflections | (Δ/σ)max < 0.001 |
343 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C15H9Cl2NO | γ = 96.338 (1)° |
Mr = 290.13 | V = 1323.2 (1) Å3 |
Triclinic, P1 | Z = 4 |
a = 8.3908 (5) Å | Mo Kα radiation |
b = 12.6079 (7) Å | µ = 0.48 mm−1 |
c = 12.7635 (7) Å | T = 296 K |
α = 99.334 (1)° | 0.35 × 0.17 × 0.08 mm |
β = 91.188 (1)° |
Bruker APEX diffractometer | 6459 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4669 reflections with I > 2σ(I) |
Tmin = 0.849, Tmax = 0.964 | Rint = 0.024 |
16946 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.33 e Å−3 |
6459 reflections | Δρmin = −0.23 e Å−3 |
343 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.8867 (2) | 0.59180 (14) | 0.44745 (13) | 0.0561 (4) | |
H1 | 0.9144 | 0.5842 | 0.5108 | 0.067* | |
C2 | 0.9182 (3) | 0.52439 (18) | 0.35853 (16) | 0.0548 (5) | |
O2 | 0.9914 (2) | 0.44512 (13) | 0.35421 (12) | 0.0729 (5) | |
C3 | 0.8476 (2) | 0.56692 (16) | 0.26602 (15) | 0.0480 (5) | |
C4 | 0.6896 (3) | 0.73604 (17) | 0.27271 (17) | 0.0537 (5) | |
H4 | 0.6677 | 0.7285 | 0.2000 | 0.064* | |
C5 | 0.6374 (3) | 0.82040 (18) | 0.3414 (2) | 0.0609 (6) | |
H5 | 0.5800 | 0.8698 | 0.3146 | 0.073* | |
C6 | 0.6698 (3) | 0.83215 (18) | 0.44947 (19) | 0.0613 (6) | |
H6 | 0.6343 | 0.8898 | 0.4944 | 0.074* | |
C7 | 0.7538 (3) | 0.76009 (18) | 0.49217 (17) | 0.0575 (5) | |
H7 | 0.7760 | 0.7684 | 0.5649 | 0.069* | |
C8 | 0.8033 (2) | 0.67554 (16) | 0.42338 (16) | 0.0487 (5) | |
C9 | 0.7750 (2) | 0.66252 (16) | 0.31353 (15) | 0.0461 (4) | |
C10 | 0.8627 (3) | 0.51431 (17) | 0.16770 (16) | 0.0520 (5) | |
H10 | 0.9152 | 0.4526 | 0.1636 | 0.062* | |
C11 | 0.8090 (2) | 0.53923 (16) | 0.06520 (15) | 0.0478 (5) | |
C12 | 0.8584 (2) | 0.63401 (17) | 0.02580 (16) | 0.0511 (5) | |
Cl12 | 0.99044 (8) | 0.73448 (5) | 0.10073 (5) | 0.07059 (19) | |
C13 | 0.8105 (3) | 0.6502 (2) | −0.07446 (18) | 0.0665 (6) | |
H13 | 0.8441 | 0.7148 | −0.0979 | 0.080* | |
C14 | 0.7137 (3) | 0.5705 (3) | −0.13847 (19) | 0.0764 (8) | |
H14 | 0.6818 | 0.5810 | −0.2059 | 0.092* | |
C15 | 0.6628 (3) | 0.4751 (2) | −0.10437 (19) | 0.0747 (7) | |
H15 | 0.5965 | 0.4211 | −0.1482 | 0.090* | |
C16 | 0.7111 (3) | 0.46028 (18) | −0.00474 (17) | 0.0570 (5) | |
Cl16 | 0.64687 (9) | 0.33919 (5) | 0.03774 (6) | 0.0858 (2) | |
N21 | 0.6215 (2) | 0.38621 (13) | 0.51019 (13) | 0.0534 (4) | |
H21 | 0.6146 | 0.4447 | 0.5543 | 0.064* | |
C22 | 0.5593 (3) | 0.36652 (16) | 0.40938 (16) | 0.0513 (5) | |
O22 | 0.4820 (2) | 0.42554 (12) | 0.36706 (12) | 0.0687 (5) | |
C23 | 0.6022 (2) | 0.25727 (15) | 0.36049 (15) | 0.0461 (4) | |
C24 | 0.7577 (3) | 0.12452 (17) | 0.44962 (18) | 0.0558 (5) | |
H24 | 0.7547 | 0.0704 | 0.3904 | 0.067* | |
C25 | 0.8278 (3) | 0.1109 (2) | 0.5444 (2) | 0.0666 (6) | |
H25 | 0.8720 | 0.0473 | 0.5491 | 0.080* | |
C26 | 0.8328 (3) | 0.1911 (2) | 0.6324 (2) | 0.0684 (6) | |
H26 | 0.8808 | 0.1805 | 0.6957 | 0.082* | |
C27 | 0.7682 (3) | 0.28678 (19) | 0.62897 (17) | 0.0602 (6) | |
H27 | 0.7717 | 0.3405 | 0.6885 | 0.072* | |
C28 | 0.6985 (2) | 0.29923 (16) | 0.53382 (16) | 0.0491 (5) | |
C29 | 0.6920 (2) | 0.21915 (15) | 0.44319 (15) | 0.0461 (4) | |
C30 | 0.5491 (2) | 0.21366 (15) | 0.26238 (15) | 0.0481 (5) | |
H30 | 0.4870 | 0.2549 | 0.2276 | 0.058* | |
C31 | 0.5768 (2) | 0.10769 (15) | 0.20232 (14) | 0.0461 (4) | |
C32 | 0.4491 (3) | 0.02878 (16) | 0.16894 (16) | 0.0518 (5) | |
Cl32 | 0.25656 (7) | 0.05641 (5) | 0.20230 (6) | 0.0764 (2) | |
C33 | 0.4683 (3) | −0.07053 (18) | 0.10949 (18) | 0.0655 (6) | |
H33 | 0.3801 | −0.1218 | 0.0890 | 0.079* | |
C34 | 0.6194 (4) | −0.0920 (2) | 0.08132 (18) | 0.0710 (7) | |
H34 | 0.6337 | −0.1587 | 0.0415 | 0.085* | |
C35 | 0.7498 (3) | −0.0170 (2) | 0.11093 (19) | 0.0692 (7) | |
H35 | 0.8519 | −0.0322 | 0.0910 | 0.083* | |
C36 | 0.7281 (3) | 0.08203 (18) | 0.17090 (17) | 0.0562 (5) | |
Cl36 | 0.89345 (8) | 0.17731 (6) | 0.20621 (6) | 0.0860 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0754 (12) | 0.0573 (11) | 0.0375 (9) | 0.0106 (9) | −0.0024 (8) | 0.0117 (8) |
C2 | 0.0685 (14) | 0.0529 (12) | 0.0444 (11) | 0.0080 (10) | −0.0019 (10) | 0.0122 (9) |
O2 | 0.1095 (14) | 0.0638 (10) | 0.0513 (9) | 0.0352 (10) | −0.0080 (9) | 0.0110 (7) |
C3 | 0.0548 (11) | 0.0485 (11) | 0.0418 (10) | 0.0073 (9) | −0.0001 (8) | 0.0099 (8) |
C4 | 0.0568 (12) | 0.0541 (12) | 0.0520 (12) | 0.0080 (10) | 0.0024 (9) | 0.0128 (10) |
C5 | 0.0615 (13) | 0.0540 (13) | 0.0704 (15) | 0.0139 (10) | 0.0091 (11) | 0.0136 (11) |
C6 | 0.0663 (14) | 0.0517 (12) | 0.0647 (15) | 0.0066 (11) | 0.0176 (11) | 0.0042 (11) |
C7 | 0.0677 (14) | 0.0572 (13) | 0.0451 (11) | 0.0011 (11) | 0.0086 (10) | 0.0043 (10) |
C8 | 0.0525 (11) | 0.0490 (11) | 0.0443 (11) | −0.0009 (9) | 0.0015 (8) | 0.0116 (9) |
C9 | 0.0490 (11) | 0.0462 (11) | 0.0434 (10) | 0.0035 (8) | 0.0030 (8) | 0.0095 (8) |
C10 | 0.0614 (13) | 0.0488 (11) | 0.0481 (11) | 0.0164 (10) | −0.0007 (9) | 0.0084 (9) |
C11 | 0.0518 (11) | 0.0534 (12) | 0.0386 (10) | 0.0184 (9) | 0.0017 (8) | 0.0004 (8) |
C12 | 0.0529 (12) | 0.0584 (12) | 0.0437 (11) | 0.0180 (10) | 0.0048 (9) | 0.0053 (9) |
Cl12 | 0.0724 (4) | 0.0672 (4) | 0.0680 (4) | −0.0048 (3) | 0.0039 (3) | 0.0073 (3) |
C13 | 0.0767 (16) | 0.0827 (17) | 0.0482 (13) | 0.0330 (14) | 0.0112 (11) | 0.0175 (12) |
C14 | 0.0839 (18) | 0.109 (2) | 0.0389 (12) | 0.0392 (17) | −0.0063 (11) | 0.0035 (13) |
C15 | 0.0667 (15) | 0.097 (2) | 0.0513 (14) | 0.0177 (14) | −0.0086 (11) | −0.0180 (14) |
C16 | 0.0572 (12) | 0.0594 (13) | 0.0507 (12) | 0.0134 (10) | 0.0053 (10) | −0.0062 (10) |
Cl16 | 0.0954 (5) | 0.0576 (4) | 0.0953 (5) | −0.0016 (3) | 0.0205 (4) | −0.0090 (3) |
N21 | 0.0712 (11) | 0.0381 (9) | 0.0460 (10) | 0.0049 (8) | −0.0040 (8) | −0.0062 (7) |
C22 | 0.0656 (13) | 0.0391 (10) | 0.0470 (11) | 0.0052 (9) | 0.0022 (9) | 0.0009 (8) |
O22 | 0.1060 (13) | 0.0475 (8) | 0.0536 (9) | 0.0290 (9) | −0.0097 (8) | −0.0010 (7) |
C23 | 0.0558 (11) | 0.0354 (9) | 0.0457 (11) | 0.0053 (8) | 0.0030 (9) | 0.0020 (8) |
C24 | 0.0636 (13) | 0.0454 (11) | 0.0568 (13) | 0.0091 (10) | −0.0043 (10) | 0.0029 (9) |
C25 | 0.0698 (15) | 0.0580 (14) | 0.0739 (16) | 0.0116 (11) | −0.0136 (12) | 0.0158 (12) |
C26 | 0.0715 (15) | 0.0714 (16) | 0.0608 (14) | 0.0008 (12) | −0.0205 (12) | 0.0145 (12) |
C27 | 0.0659 (14) | 0.0593 (13) | 0.0485 (12) | −0.0037 (11) | −0.0092 (10) | −0.0024 (10) |
C28 | 0.0502 (11) | 0.0421 (10) | 0.0509 (11) | −0.0026 (8) | −0.0017 (9) | 0.0019 (8) |
C29 | 0.0488 (11) | 0.0423 (10) | 0.0454 (10) | 0.0008 (8) | −0.0010 (8) | 0.0046 (8) |
C30 | 0.0578 (12) | 0.0420 (10) | 0.0450 (11) | 0.0141 (9) | 0.0004 (9) | 0.0038 (8) |
C31 | 0.0609 (12) | 0.0435 (10) | 0.0346 (9) | 0.0146 (9) | −0.0012 (8) | 0.0030 (8) |
C32 | 0.0658 (13) | 0.0482 (11) | 0.0414 (10) | 0.0149 (10) | −0.0065 (9) | 0.0028 (9) |
Cl32 | 0.0616 (4) | 0.0763 (4) | 0.0860 (5) | 0.0078 (3) | −0.0018 (3) | −0.0020 (3) |
C33 | 0.0947 (18) | 0.0446 (12) | 0.0544 (13) | 0.0137 (12) | −0.0129 (12) | −0.0020 (10) |
C34 | 0.115 (2) | 0.0513 (13) | 0.0489 (13) | 0.0359 (15) | −0.0008 (13) | −0.0040 (10) |
C35 | 0.0865 (18) | 0.0728 (16) | 0.0558 (13) | 0.0412 (14) | 0.0129 (12) | 0.0105 (12) |
C36 | 0.0642 (13) | 0.0562 (12) | 0.0503 (12) | 0.0174 (10) | 0.0042 (10) | 0.0082 (10) |
Cl36 | 0.0609 (4) | 0.0907 (5) | 0.1046 (6) | 0.0068 (3) | 0.0163 (4) | 0.0106 (4) |
N1—C2 | 1.353 (3) | N21—C22 | 1.353 (3) |
N1—C8 | 1.399 (3) | N21—C28 | 1.403 (3) |
N1—H1 | 0.8600 | N21—H21 | 0.8600 |
C2—O2 | 1.224 (2) | C22—O22 | 1.220 (3) |
C2—C3 | 1.510 (3) | C22—C23 | 1.502 (3) |
C3—C10 | 1.336 (3) | C23—C30 | 1.330 (3) |
C3—C9 | 1.460 (3) | C23—C29 | 1.457 (3) |
C4—C5 | 1.381 (3) | C24—C25 | 1.378 (3) |
C4—C9 | 1.390 (3) | C24—C29 | 1.382 (3) |
C4—H4 | 0.9300 | C24—H24 | 0.9300 |
C5—C6 | 1.381 (3) | C25—C26 | 1.381 (3) |
C5—H5 | 0.9300 | C25—H25 | 0.9300 |
C6—C7 | 1.380 (3) | C26—C27 | 1.383 (3) |
C6—H6 | 0.9300 | C26—H26 | 0.9300 |
C7—C8 | 1.375 (3) | C27—C28 | 1.376 (3) |
C7—H7 | 0.9300 | C27—H27 | 0.9300 |
C8—C9 | 1.397 (3) | C28—C29 | 1.402 (3) |
C10—C11 | 1.468 (3) | C30—C31 | 1.473 (3) |
C10—H10 | 0.9300 | C30—H30 | 0.9300 |
C11—C12 | 1.395 (3) | C31—C32 | 1.389 (3) |
C11—C16 | 1.401 (3) | C31—C36 | 1.395 (3) |
C12—C13 | 1.386 (3) | C32—C33 | 1.382 (3) |
C12—Cl12 | 1.732 (2) | C32—Cl32 | 1.737 (2) |
C13—C14 | 1.365 (4) | C33—C34 | 1.369 (4) |
C13—H13 | 0.9300 | C33—H33 | 0.9300 |
C14—C15 | 1.372 (4) | C34—C35 | 1.369 (4) |
C14—H14 | 0.9300 | C34—H34 | 0.9300 |
C15—C16 | 1.374 (3) | C35—C36 | 1.387 (3) |
C15—H15 | 0.9300 | C35—H35 | 0.9300 |
C16—Cl16 | 1.736 (3) | C36—Cl36 | 1.733 (2) |
C2—N1—C8 | 111.47 (17) | C22—N21—C28 | 111.48 (16) |
C2—N1—H1 | 124.3 | C22—N21—H21 | 124.3 |
C8—N1—H1 | 124.3 | C28—N21—H21 | 124.3 |
O2—C2—N1 | 126.48 (19) | O22—C22—N21 | 126.61 (19) |
O2—C2—C3 | 126.87 (19) | O22—C22—C23 | 126.87 (19) |
N1—C2—C3 | 106.64 (18) | N21—C22—C23 | 106.52 (18) |
C10—C3—C9 | 136.10 (19) | C30—C23—C29 | 133.96 (18) |
C10—C3—C2 | 118.73 (18) | C30—C23—C22 | 120.05 (18) |
C9—C3—C2 | 105.17 (17) | C29—C23—C22 | 105.84 (16) |
C5—C4—C9 | 119.3 (2) | C25—C24—C29 | 119.5 (2) |
C5—C4—H4 | 120.4 | C25—C24—H24 | 120.2 |
C9—C4—H4 | 120.4 | C29—C24—H24 | 120.2 |
C4—C5—C6 | 120.6 (2) | C24—C25—C26 | 120.4 (2) |
C4—C5—H5 | 119.7 | C24—C25—H25 | 119.8 |
C6—C5—H5 | 119.7 | C26—C25—H25 | 119.8 |
C7—C6—C5 | 121.3 (2) | C25—C26—C27 | 121.7 (2) |
C7—C6—H6 | 119.3 | C25—C26—H26 | 119.2 |
C5—C6—H6 | 119.3 | C27—C26—H26 | 119.2 |
C8—C7—C6 | 117.7 (2) | C28—C27—C26 | 117.3 (2) |
C8—C7—H7 | 121.2 | C28—C27—H27 | 121.4 |
C6—C7—H7 | 121.2 | C26—C27—H27 | 121.4 |
C7—C8—C9 | 122.4 (2) | C27—C28—C29 | 122.23 (19) |
C7—C8—N1 | 128.23 (19) | C27—C28—N21 | 128.52 (19) |
C9—C8—N1 | 109.37 (17) | C29—C28—N21 | 109.23 (17) |
C4—C9—C8 | 118.71 (19) | C24—C29—C28 | 118.90 (18) |
C4—C9—C3 | 133.96 (19) | C24—C29—C23 | 134.09 (18) |
C8—C9—C3 | 107.33 (17) | C28—C29—C23 | 106.90 (17) |
C3—C10—C11 | 129.73 (19) | C23—C30—C31 | 127.71 (18) |
C3—C10—H10 | 115.1 | C23—C30—H30 | 116.1 |
C11—C10—H10 | 115.1 | C31—C30—H30 | 116.1 |
C12—C11—C16 | 115.33 (19) | C32—C31—C36 | 116.07 (18) |
C12—C11—C10 | 125.09 (19) | C32—C31—C30 | 120.65 (18) |
C16—C11—C10 | 119.4 (2) | C36—C31—C30 | 123.21 (19) |
C13—C12—C11 | 122.4 (2) | C33—C32—C31 | 122.9 (2) |
C13—C12—Cl12 | 117.53 (19) | C33—C32—Cl32 | 118.52 (19) |
C11—C12—Cl12 | 120.03 (16) | C31—C32—Cl32 | 118.61 (15) |
C14—C13—C12 | 119.5 (2) | C34—C33—C32 | 118.8 (2) |
C14—C13—H13 | 120.3 | C34—C33—H33 | 120.6 |
C12—C13—H13 | 120.3 | C32—C33—H33 | 120.6 |
C13—C14—C15 | 120.7 (2) | C33—C34—C35 | 121.0 (2) |
C13—C14—H14 | 119.7 | C33—C34—H34 | 119.5 |
C15—C14—H14 | 119.7 | C35—C34—H34 | 119.5 |
C14—C15—C16 | 119.2 (2) | C34—C35—C36 | 119.3 (2) |
C14—C15—H15 | 120.4 | C34—C35—H35 | 120.3 |
C16—C15—H15 | 120.4 | C36—C35—H35 | 120.3 |
C15—C16—C11 | 122.9 (2) | C35—C36—C31 | 122.0 (2) |
C15—C16—Cl16 | 118.9 (2) | C35—C36—Cl36 | 118.96 (19) |
C11—C16—Cl16 | 118.12 (17) | C31—C36—Cl36 | 119.08 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···O22i | 0.86 | 2.03 | 2.854 (2) | 159 |
N1—H1···O2ii | 0.86 | 1.99 | 2.837 (2) | 171 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C15H9Cl2NO |
Mr | 290.13 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 8.3908 (5), 12.6079 (7), 12.7635 (7) |
α, β, γ (°) | 99.334 (1), 91.188 (1), 96.338 (1) |
V (Å3) | 1323.2 (1) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.48 |
Crystal size (mm) | 0.35 × 0.17 × 0.08 |
Data collection | |
Diffractometer | Bruker APEX |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.849, 0.964 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16946, 6459, 4669 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.134, 1.03 |
No. of reflections | 6459 |
No. of parameters | 343 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.33, −0.23 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and publCIF (Westrip, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N21—H21···O22i | 0.86 | 2.03 | 2.854 (2) | 159.2 |
N1—H1···O2ii | 0.86 | 1.99 | 2.837 (2) | 170.5 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+2, −y+1, −z+1. |
Acknowledgements
The authors are grateful for the grants from the Welch Foundation (N-118) and the DARPA (HR0011–06–1–0032).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
3-(Substituted-benzylidene)-1,3-dihydro-indolin derivatives show a variety of pharmacologically important properties such as being protein and tyrosine kinase inhibitors (Olgen et al., 2005, 2007; Sun et al., 2003) as well as antitumor (Andreani et al., 2006) and neuroprotective agents (Johnson et al., 2005). We have designed, synthesized and crystallized several 3-substituted indolin-2-one derivatives to study their neuroprotective properties (Balderamos et al., 2008 and Ankati et al., 2009). In relation of structure-activity of 3-substituted indolin-2-ones, the title compound was synthesized and its crystal structure is reported here. It is similar to the structure of 5-bromo substituted (E)-5-bromo-3-(2,6-dichlorobenzylidene)indolin-2-one (Zhang et al. 2009c). The X-ray crystal structure shows the title compound to show an E configuration.
For studying the biological properties a series of 3-substituted indolin-2-one derivatives have been synthesized in our lab and their neuroprotective activities have been tested (Balderamos et al. 2008). As a part of our research on the relationship between the biological activities and solid structures a couple of crystal structures of the derivatives have been carried out (Zhang, et al., 2008, 2009a, 2009b, 2009c). The title compound consists of an oxindolyl and a dichlorophenyl unit (Fig 1). The dihedral angles between the two aromatic rings are basically identical for the two independent molecules and measure to 63.4°(1) and 63.2°(1), respectively. The crystal structure revealed that intermolecular H-bonds (Table 1), linking two symmetry related inverted molecules, form an eight membered dimeric ring system (Fig 2).