organic compounds
1-(3-Phenylprop-2-ynyl)pyrrolidinium chloride
aKey Laboratory of Pesticides and Chemical Biology of the Ministry of Education, College of Chemistry, Central China Normal University, Wuhan 430079, People's Republic of China
*Correspondence e-mail: leileitaotao6666@163.com
The title compound C13H16N+·Cl−, an achiral salt, was synthesized by a three-component coupling reaction in the presence of copper(I) iodide. The configuration of five-membered ring is close to an The is stabilized by intermolecular C—H⋯Cl and N—H⋯Cl interactions.
Related literature
For the preparation of the title compound, see: Nilsson et al. (1992). For background to propargylamines, see: Dyker (1999); Hattori et al. (1993); Konishi et al. (1990).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536809042329/pb2009sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809042329/pb2009Isup2.hkl
The title compound was synthesized according to the literature procedure of Nilsson et al. (1992).
Single crystals suitable for X–ray diffraction were prepared by slow evaporation of a solution of the title compound in chloroform : methanol (20 : 1) and adding 1d HCl at room temperature.
All H atoms were initially located in a difference map, but were constrained to an idealized geometry. Constrained bond lengths and isotropic displacement parameters: (C—H = 0.97 Å) and Uiso(H) =1.2 Ueq(C) for methylene, and (C—H = 0.93 Å) and Uiso(H) =1.2Ueq(C) for aromatic H atoms.
Propargylamines, which have interesting biological activities, are compounds of versatile and important synthetic intermediates. (Konishi et al., 1990; Hattori et al., 1993; Dyker et al.,1999). The reaction which a three component procedure between terminal
formaldehyde and secondary and give rise to the propargylamines with rapid reaction rates by the introduction of copper (I) catalysts.Here we report the
of the title compound (Fig. 1). The length of the N1—C9 bond in this compound was found to be 1.479 Å, which is approximate with the length of ordinary N—C single bond (1.47 Å).The four carbon atoms of the five–member ring are not in the same plane, the torsion angle is 14.92 °. It was close to the envelope conformation.X-ray analysis reveals that the
is stabilized by C—H···Cl interaction and N—H···Cl interaction.For the preparation of the title compound, see: Nilsson et al. (1992). For background to propargylamines, see: Dyker (1999); Hattori et al. (1993); Konishi et al. (1990).
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. View of the molecule of (I) showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are represented by spheres of arbitrary radius. |
C13H16N+·Cl− | F(000) = 472 |
Mr = 221.72 | Dx = 1.187 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5548 reflections |
a = 10.9504 (2) Å | θ = 2.7–28.1° |
b = 11.3553 (3) Å | µ = 0.28 mm−1 |
c = 11.1951 (2) Å | T = 298 K |
β = 117.008 (1)° | Block, colorless |
V = 1240.24 (4) Å3 | 0.20 × 0.10 × 0.10 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 2353 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.054 |
Graphite monochromator | θmax = 26.0°, θmin = 2.1° |
φ and ω scans | h = −13→13 |
10560 measured reflections | k = −14→14 |
2432 independent reflections | l = −13→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.067 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.158 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.27 | w = 1/[σ2(Fo2) + (0.053P)2 + 0.6238P] where P = (Fo2 + 2Fc2)/3 |
2432 reflections | (Δ/σ)max < 0.001 |
139 parameters | Δρmax = 0.35 e Å−3 |
1 restraint | Δρmin = −0.21 e Å−3 |
C13H16N+·Cl− | V = 1240.24 (4) Å3 |
Mr = 221.72 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.9504 (2) Å | µ = 0.28 mm−1 |
b = 11.3553 (3) Å | T = 298 K |
c = 11.1951 (2) Å | 0.20 × 0.10 × 0.10 mm |
β = 117.008 (1)° |
Bruker SMART CCD area-detector diffractometer | 2353 reflections with I > 2σ(I) |
10560 measured reflections | Rint = 0.054 |
2432 independent reflections |
R[F2 > 2σ(F2)] = 0.067 | 1 restraint |
wR(F2) = 0.158 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.27 | Δρmax = 0.35 e Å−3 |
2432 reflections | Δρmin = −0.21 e Å−3 |
139 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.6296 (3) | 0.8606 (2) | 0.7343 (3) | 0.0493 (6) | |
C2 | 0.4916 (3) | 0.8723 (3) | 0.6473 (3) | 0.0620 (7) | |
H2 | 0.4636 | 0.9243 | 0.5755 | 0.074* | |
C3 | 0.3957 (3) | 0.8078 (3) | 0.6660 (4) | 0.0735 (9) | |
H3 | 0.3032 | 0.8162 | 0.6069 | 0.088* | |
C4 | 0.4359 (4) | 0.7315 (3) | 0.7707 (4) | 0.0774 (10) | |
H4 | 0.3708 | 0.6878 | 0.7831 | 0.093* | |
C5 | 0.5724 (4) | 0.7188 (3) | 0.8581 (4) | 0.0734 (9) | |
H5 | 0.5991 | 0.6663 | 0.9294 | 0.088* | |
C6 | 0.6697 (3) | 0.7830 (2) | 0.8413 (3) | 0.0590 (7) | |
H6 | 0.7620 | 0.7746 | 0.9013 | 0.071* | |
C7 | 0.7303 (3) | 0.9288 (2) | 0.7156 (3) | 0.0551 (7) | |
C8 | 0.8158 (3) | 0.9840 (2) | 0.7040 (3) | 0.0570 (7) | |
C9 | 0.9214 (3) | 1.0575 (2) | 0.6955 (3) | 0.0581 (7) | |
H9A | 0.9276 | 1.1316 | 0.7410 | 0.070* | |
H9B | 0.8952 | 1.0748 | 0.6021 | 0.070* | |
C10 | 1.1669 (3) | 1.0766 (3) | 0.7524 (3) | 0.0666 (8) | |
H10A | 1.1679 | 1.0699 | 0.6665 | 0.080* | |
H10B | 1.1513 | 1.1584 | 0.7666 | 0.080* | |
C11 | 1.2991 (3) | 1.0342 (3) | 0.8625 (3) | 0.0759 (9) | |
H11A | 1.3503 | 1.0994 | 0.9190 | 0.091* | |
H11B | 1.3545 | 0.9971 | 0.8258 | 0.091* | |
C12 | 1.2620 (4) | 0.9460 (3) | 0.9424 (3) | 0.0784 (9) | |
H12A | 1.2790 | 0.8662 | 0.9227 | 0.094* | |
H12B | 1.3153 | 0.9601 | 1.0378 | 0.094* | |
C13 | 1.1110 (3) | 0.9647 (3) | 0.8992 (3) | 0.0640 (8) | |
H13A | 1.0679 | 0.8928 | 0.9081 | 0.077* | |
H13B | 1.0967 | 1.0265 | 0.9513 | 0.077* | |
Cl1 | 0.03151 (7) | 0.70879 (6) | 0.07738 (7) | 0.0545 (2) | |
N1 | 1.0572 (2) | 0.99964 (19) | 0.7561 (2) | 0.0491 (5) | |
H1 | 1.051 (3) | 0.9386 (17) | 0.707 (2) | 0.059* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0479 (14) | 0.0489 (14) | 0.0587 (15) | −0.0012 (11) | 0.0308 (12) | −0.0117 (12) |
C2 | 0.0534 (16) | 0.0660 (17) | 0.0676 (18) | 0.0029 (13) | 0.0284 (14) | 0.0021 (14) |
C3 | 0.0471 (16) | 0.082 (2) | 0.090 (2) | −0.0070 (15) | 0.0306 (16) | −0.0131 (18) |
C4 | 0.079 (2) | 0.075 (2) | 0.103 (3) | −0.0238 (18) | 0.063 (2) | −0.019 (2) |
C5 | 0.095 (3) | 0.0597 (18) | 0.078 (2) | −0.0041 (16) | 0.051 (2) | 0.0032 (15) |
C6 | 0.0556 (16) | 0.0596 (17) | 0.0616 (17) | 0.0044 (13) | 0.0265 (14) | −0.0063 (13) |
C7 | 0.0528 (15) | 0.0557 (15) | 0.0642 (17) | −0.0009 (12) | 0.0329 (14) | −0.0069 (12) |
C8 | 0.0559 (16) | 0.0579 (16) | 0.0628 (17) | −0.0023 (13) | 0.0317 (14) | −0.0067 (13) |
C9 | 0.0617 (17) | 0.0524 (15) | 0.0664 (18) | −0.0038 (13) | 0.0345 (15) | −0.0002 (13) |
C10 | 0.0595 (17) | 0.0709 (19) | 0.0699 (19) | −0.0164 (14) | 0.0297 (15) | 0.0096 (15) |
C11 | 0.0622 (19) | 0.095 (2) | 0.070 (2) | −0.0112 (17) | 0.0293 (17) | −0.0061 (18) |
C12 | 0.080 (2) | 0.085 (2) | 0.0586 (18) | 0.0083 (18) | 0.0219 (17) | 0.0059 (16) |
C13 | 0.081 (2) | 0.0623 (17) | 0.0562 (17) | −0.0052 (15) | 0.0383 (16) | 0.0044 (13) |
Cl1 | 0.0537 (4) | 0.0555 (4) | 0.0528 (4) | 0.0018 (3) | 0.0228 (3) | 0.0045 (3) |
N1 | 0.0566 (13) | 0.0470 (12) | 0.0498 (12) | −0.0099 (10) | 0.0296 (11) | −0.0019 (9) |
C1—C2 | 1.383 (4) | C9—H9B | 0.9700 |
C1—C6 | 1.388 (4) | C10—C11 | 1.492 (5) |
C1—C7 | 1.439 (4) | C10—N1 | 1.501 (3) |
C2—C3 | 1.372 (4) | C10—H10A | 0.9700 |
C2—H2 | 0.9300 | C10—H10B | 0.9700 |
C3—C4 | 1.360 (5) | C11—C12 | 1.516 (5) |
C3—H3 | 0.9300 | C11—H11A | 0.9700 |
C4—C5 | 1.372 (5) | C11—H11B | 0.9700 |
C4—H4 | 0.9300 | C12—C13 | 1.512 (5) |
C5—C6 | 1.373 (4) | C12—H12A | 0.9700 |
C5—H5 | 0.9300 | C12—H12B | 0.9700 |
C6—H6 | 0.9300 | C13—N1 | 1.488 (3) |
C7—C8 | 1.182 (4) | C13—H13A | 0.9700 |
C8—C9 | 1.465 (4) | C13—H13B | 0.9700 |
C9—N1 | 1.479 (4) | N1—H1 | 0.868 (10) |
C9—H9A | 0.9700 | ||
C2—C1—C6 | 119.1 (3) | N1—C10—H10A | 110.5 |
C2—C1—C7 | 120.7 (3) | C11—C10—H10B | 110.5 |
C6—C1—C7 | 120.3 (3) | N1—C10—H10B | 110.5 |
C3—C2—C1 | 120.6 (3) | H10A—C10—H10B | 108.7 |
C3—C2—H2 | 119.7 | C10—C11—C12 | 106.3 (3) |
C1—C2—H2 | 119.7 | C10—C11—H11A | 110.5 |
C4—C3—C2 | 120.1 (3) | C12—C11—H11A | 110.5 |
C4—C3—H3 | 120.0 | C10—C11—H11B | 110.5 |
C2—C3—H3 | 120.0 | C12—C11—H11B | 110.5 |
C3—C4—C5 | 120.2 (3) | H11A—C11—H11B | 108.7 |
C3—C4—H4 | 119.9 | C13—C12—C11 | 105.4 (3) |
C5—C4—H4 | 119.9 | C13—C12—H12A | 110.7 |
C4—C5—C6 | 120.6 (3) | C11—C12—H12A | 110.7 |
C4—C5—H5 | 119.7 | C13—C12—H12B | 110.7 |
C6—C5—H5 | 119.7 | C11—C12—H12B | 110.7 |
C5—C6—C1 | 119.6 (3) | H12A—C12—H12B | 108.8 |
C5—C6—H6 | 120.2 | N1—C13—C12 | 102.8 (2) |
C1—C6—H6 | 120.2 | N1—C13—H13A | 111.2 |
C8—C7—C1 | 178.0 (3) | C12—C13—H13A | 111.2 |
C7—C8—C9 | 176.5 (3) | N1—C13—H13B | 111.2 |
C8—C9—N1 | 112.1 (2) | C12—C13—H13B | 111.2 |
C8—C9—H9A | 109.2 | H13A—C13—H13B | 109.1 |
N1—C9—H9A | 109.2 | C9—N1—C13 | 115.9 (2) |
C8—C9—H9B | 109.2 | C9—N1—C10 | 112.3 (2) |
N1—C9—H9B | 109.2 | C13—N1—C10 | 104.7 (2) |
H9A—C9—H9B | 107.9 | C9—N1—H1 | 107 (2) |
C11—C10—N1 | 106.1 (2) | C13—N1—H1 | 110 (2) |
C11—C10—H10A | 110.5 | C10—N1—H1 | 106.3 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···Cl1i | 0.93 | 2.81 | 3.726 (3) | 170 |
C9—H9A···Cl1ii | 0.97 | 2.61 | 3.547 (3) | 164 |
N1—H1···Cl1iii | 0.87 (1) | 2.16 (1) | 3.028 (2) | 178 (3) |
Symmetry codes: (i) x+1, y, z+1; (ii) −x+1, −y+2, −z+1; (iii) x+1, −y+3/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H16N+·Cl− |
Mr | 221.72 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 10.9504 (2), 11.3553 (3), 11.1951 (2) |
β (°) | 117.008 (1) |
V (Å3) | 1240.24 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.20 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10560, 2432, 2353 |
Rint | 0.054 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.067, 0.158, 1.27 |
No. of reflections | 2432 |
No. of parameters | 139 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.35, −0.21 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···Cl1i | 0.93 | 2.81 | 3.726 (3) | 170.4 |
C9—H9A···Cl1ii | 0.97 | 2.61 | 3.547 (3) | 163.6 |
N1—H1···Cl1iii | 0.868 (10) | 2.161 (10) | 3.028 (2) | 178 (3) |
Symmetry codes: (i) x+1, y, z+1; (ii) −x+1, −y+2, −z+1; (iii) x+1, −y+3/2, z+1/2. |
Acknowledgements
The author is grateful to Central China Normal University for support.
References
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Propargylamines, which have interesting biological activities, are compounds of versatile and important synthetic intermediates. (Konishi et al., 1990; Hattori et al., 1993; Dyker et al.,1999). The reaction which a three component procedure between terminal alkynes, formaldehyde and secondary amines and give rise to the propargylamines with rapid reaction rates by the introduction of copper (I) catalysts.
Here we report the crystal structure of the title compound (Fig. 1). The length of the N1—C9 bond in this compound was found to be 1.479 Å, which is approximate with the length of ordinary N—C single bond (1.47 Å).The four carbon atoms of the five–member ring are not in the same plane, the torsion angle is 14.92 °. It was close to the envelope conformation.
X-ray analysis reveals that the crystal structure is stabilized by C—H···Cl interaction and N—H···Cl interaction.