organic compounds
(3E,5E)-1-Benzyl-3,5-bis(2-fluorobenzylidene)piperidin-4-one
aBioinformatics Infrastructure Facility, Department of Biotechnology, School of Life Science, University of Hyderabad, Hyderabad 500 046, India, bChemistry Division, School of Science and Humanities, VIT University, Vellore 632 014, India, and cPhysics Division, School of Science and Humanities, VIT University, Vellore 632 014, India
*Correspondence e-mail: ravindranath_rathore@yahoo.com
The inversion-related molecules of the title compound, C26H21F2NO, associate into closed dimeric subunits via co-operative C—H⋯π interactions. Two non-classical C—H⋯O and one C—H⋯N intramolecular hydrogen bonds are also found in the The piperidin-4-one ring adopts a sofa conforamtion with the 1-benzyl group in the equatorial position, and the equiplanar fluorophenyl substituents in the 3- and 5-positions stretched out on either side. The 1-benzyl group is disposed towards the substituent in the 6th position of the piperidin-4-one ring. The 3,5-diene units possess E configurations.
Related literature
For the synthesis of and pharmaceutical studies on 3,5-diarylidene-4-piperidone compounds, see: Krapcho & Turk (1979); Das et al. (2007). For a related structure, see: Suresh et al. (2007). For ring conformations, see: Cremer & Pople (1975), Duax et al., (1976). For C—H⋯π interactions, see: Nishio et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536809039609/rk2161sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809039609/rk2161Isup2.hkl
A mixture of 1-benzyl-4-piperidone (0.01 mol) and 2-fluorobenzaldehyde (0.02 mol) was added to a warm solution of ammonium acetate (0.01 mol) in absolute ethanol (15 ml). The mixture was gradually warmed on a water bath until the yellow color changed to orange. The mixture was kept aside overnight at room temperature. Reactions were monitored with TLC for completeness. The solid obtained was separated and the crude compound were purified using silica gel
with hexane and ethyl acetate as elutant. Final yields: 96.19%; m.p. 415 (2)K. Suitable single crystals for data collection were grown from ethanol, tetrahydrofurane and benzene in (1:1:1) ratio.Hydrogen atoms were placed in the geometrically expected positions and refined with the riding options. The distances with hydrogen atoms are: C(aromatic)–H = 0.93 Å, C(methylene)–H = 0.97 Å, and Uiso(H) = 1.2Ueq(C).
Derivatives of 3,5-diarylidene-4-piperidones (D4P) are pharmaceutically important compounds (Krapcho & Turk, 1979; Das et al., 2007). During our investigations on D4P, a series of compounds were prepared. The molecular and
of title compound (3E,5E)-1-benzyl-3,5-bis[(2-fluorophenyl)methylidene]piperidin-4-one, (I), is reported here.The molecular structure of I with atom numbering scheme is shown in Fig. 1. The 3,5-diene moieties possess E-configuration. The 3,5-difluorophenyl substituents of the piperidinone ring are stretched out on either side with following values of torsion angles: C4–C3–C14–C15 = 175.34 (16)°, C3–C14–C15–C16 = 147.49 (19)°, C4–C5–C21–C22 = -172.85 (15)°, and C5–C21–C22–C23 = -151.13 (17)°. The dihedral angle of 3,5-difluorophenyl units is 3.29 (7)°. The dihedral angles between of benzene rings of 3- and 5-substitutens with respect to the corresponding ring of 1-benzyl substituent are 58.65 (7)° and 56.90 (7)°, respectively.
The sp2 hybridized C3, C4 and C5 atoms give rise to a sofa-conformation of the six-membered piperidinone ring as also observed in the structures of related compounds, namely, (R)-3,5-Bis[(E)-benzylidene]-1-(1-phenylethyl)piperidin-4-one, 3,5-bis[(E)-4-chlorobenzylidene]-1-[(R)-1-phenylethyl] piperidin-4-one, and 3,5-bis[(E)-2-chlorobenzylidene]-1-[(R)-1-phenylethyl] piperidin-4-one (Suresh et al., 2007). In the sofa conformation, the N1 atom is -0.781 (1)Å shifted out of the base plane (C2/C3/C4/C5/C6). The deviation of the ring from ideal sofa-conformation, ΔC2 (Duax et al., 1976) is 3.4°. The Cremer and Pople (Cremer & Pople, 1975) puckering parameters, corresponding to the ring conformation are as follows: q2 = 0.5432 (16)Å, q3 = 0.2577 (17)Å, φ = 3.14 (18)°, θ = 64.62 (16)°, and total puckering amplitude Q = 0.6012 (16)Å. The benzyl substituent is in equatorial position of piperidinone ring and its conformation is described by the following torsion angles: C2–N1–C7–C8 = -162.82 (14)° and N1–C7–C8–C9 = -153.28 (15)°. The N1-benzyl group is disposed towards C6 substituent of the piperidin-4-one ring, a feature that varies among related structures.
The observed inter- and intra-molecular interactions are listed in Table 1. The adjacent H14 and H21 atoms participate in intra-molecular C14–H14···O1···H21–C21 interaction scheme. The crystal packing is characterized by C–H···π hydrogen-bonded dimers. The methylene and aromatic groups of the N1-benzyl substituent participate in the interaction forming C7–H7B···Cg2i with symmetry code: (i) -x+1, -y+2, -z+2. The Cg2 is the centroid of (C8-C13) ring. The observed geometry of C–H···π interaction in I is in the range, reported by the Nishio and coworkers (Nishio et al., 2009). Crystal packing is shown in Fig. 2.
For literature related to synthesis and pharmaceutical studies on 3,5-diarylidene-4-piperidone compounds, see: Krapcho & Turk, (1979); Das et al., (2007). The related π interactions, see: Nishio et al., (2009). Cg2 is the centroid of the C8–C13 ring.
see: Suresh et al., (2007). For the related ring conformation, see: Cremer & Pople (1975), Duax et al., (1976). For the C–H···Data collection: APEX2 (Bruker, 2004); cell
SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).C26H21F2NO | Z = 2 |
Mr = 401.44 | F(000) = 420 |
Triclinic, P1 | Dx = 1.289 Mg m−3 |
Hall symbol: -P 1 | Melting point: 415(2) K |
a = 6.7738 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.5652 (7) Å | Cell parameters from 3075 reflections |
c = 12.8535 (7) Å | θ = 2.8–21.7° |
α = 71.051 (1)° | µ = 0.09 mm−1 |
β = 88.057 (2)° | T = 298 K |
γ = 89.117 (2)° | Block, colourless |
V = 1034.12 (10) Å3 | 0.19 × 0.18 × 0.12 mm |
Bruker APEXII CCD area-detector diffractometer | 4281 independent reflections |
Radiation source: fine-focus sealed tube | 2531 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
φ and ω scans | θmax = 26.9°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −6→8 |
Tmin = 0.966, Tmax = 0.984 | k = −15→15 |
13326 measured reflections | l = −14→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.12 | w = 1/[σ2(Fo2) + (0.0626P)2] where P = (Fo2 + 2Fc2)/3 |
4281 reflections | (Δ/σ)max < 0.001 |
271 parameters | Δρmax = 0.16 e Å−3 |
0 restraints | Δρmin = −0.15 e Å−3 |
C26H21F2NO | γ = 89.117 (2)° |
Mr = 401.44 | V = 1034.12 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.7738 (4) Å | Mo Kα radiation |
b = 12.5652 (7) Å | µ = 0.09 mm−1 |
c = 12.8535 (7) Å | T = 298 K |
α = 71.051 (1)° | 0.19 × 0.18 × 0.12 mm |
β = 88.057 (2)° |
Bruker APEXII CCD area-detector diffractometer | 4281 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 2531 reflections with I > 2σ(I) |
Tmin = 0.966, Tmax = 0.984 | Rint = 0.029 |
13326 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.12 | Δρmax = 0.16 e Å−3 |
4281 reflections | Δρmin = −0.15 e Å−3 |
271 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. =========================================================================== Weighted least-squares planes through the starred atoms (Nardelli, Musatti, Domiano & Andreetti Ric.Sci.(1965),15(II–A),807). Equation of the plane: m1*X+m2*Y+m3*Z=d Plane 1 m1 = 0.3436 (10) m2 = -0.8917 (5) m3 = -0.2946 (7) D = -14.293 (8) Atom d s d/s (d/s)**2 C2 * 0.0169 0.0018 9.390 88.168 C3 * -0.0140 0.0017 -8.219 67.556 C5 * 0.0135 0.0017 8.052 64.834 C6 * -0.0165 0.0018 -9.252 85.593 C4 -0.1534 0.0018 -84.823 7194.988 N1 -0.7455 0.0014 -534.558 285752.750 O1 -0.3305 0.0015 -221.129 48897.992 ============ Sum((d/s)**2) for starred atoms 306.151 Chi-squared at 95% for 1 degrees of freedom: 3.84 The group of atoms deviates significantly from planarity Plane 2 m1 = 0.3043 (8) m2 = -0.9090 (3) m3 = -0.2848 (7) D = -14.485 (7) Atom d s d/s (d/s)**2 C2 * -0.0011 0.0018 -0.607 0.368 C3 * 0.0338 0.0017 19.758 390.365 C5 * 0.0610 0.0017 36.177 1308.754 C6 * -0.0350 0.0018 -19.553 382.330 C4 * -0.0718 0.0018 -39.539 1563.307 N1 -0.7813 0.0014 -557.032 310284.906 O1 -0.1954 0.0015 -129.768 16839.834 ============ Sum((d/s)**2) for starred atoms 3645.124 Chi-squared at 95% for 2 degrees of freedom: 5.99 The group of atoms deviates significantly from planarity Plane 3 m1 = -0.3826 (9) m2 = -0.4121 (9) m3 = -0.8269 (6) D = -16.581 (12) Atom d s d/s (d/s)**2 C8 * -0.0025 0.0018 -1.437 2.066 C9 * 0.0039 0.0022 1.780 3.167 C10 * -0.0027 0.0028 -0.947 0.896 C11 * -0.0017 0.0033 -0.509 0.259 C12 * 0.0014 0.0030 0.464 0.215 C13 * 0.0014 0.0021 0.691 0.478 C7 -0.1040 0.0017 -60.838 3701.229 ============ Sum((d/s)**2) for starred atoms 7.082 Chi-squared at 95% for 3 degrees of freedom: 7.81 The group of atoms does not deviate significantly from planarity Plane 4 m1 = -0.2708 (9) m2 = -0.9623 (2) m3 = -0.0242 (8) D = -12.113 (12) Atom d s d/s (d/s)**2 C15 * -0.0045 0.0019 -2.435 5.931 C16 * 0.0046 0.0022 2.062 4.253 C17 * 0.0018 0.0025 0.733 0.538 C18 * -0.0063 0.0024 -2.623 6.878 C19 * 0.0030 0.0021 1.381 1.908 C20 * 0.0019 0.0019 1.030 1.061 F1 0.0148 0.0017 8.905 79.302 C14 0.0542 0.0019 29.279 857.250 ============ Sum((d/s)**2) for starred atoms 20.569 Chi-squared at 95% for 3 degrees of freedom: 7.81 The group of atoms deviates significantly from planarity Plane 5 m1 = -0.2350 (1) m2 = -0.9696 (2) m3 = -0.0685 (8) D = -12.925 (6) Atom d s d/s (d/s)**2 C22 * 0.0014 0.0018 0.732 0.536 C23 * -0.0006 0.0021 -0.301 0.091 C24 * -0.0019 0.0024 -0.785 0.616 C25 * 0.0034 0.0025 1.368 1.872 C26 * -0.0015 0.0024 -0.645 0.416 C27 * -0.0009 0.0021 -0.411 0.169 F1 0.0249 0.0017 14.969 224.077 C21 0.0995 0.0018 54.152 2932.435 ============ Sum((d/s)**2) for starred atoms 3.699 Chi-squared at 95% for 3 degrees of freedom: 7.81 The group of atoms does not deviate significantly from planarity Dihedral angles formed by LSQ-planes Plane - plane angle (s.u.) angle (s.u.) 1 2 2.53 (7) 177.47 (7) 1 3 61.34 (7) 118.66 (7) 1 4 39.45 (7) 140.55 (7) 1 5 36.49 (8) 143.51 (8) 2 3 60.42 (7) 119.58 (7) 2 4 36.94 (7) 143.06 (7) 2 5 33.97 (7) 146.03 (7) 3 4 58.65 (7) 121.35 (7) 3 5 56.90 (7) 123.10 (7) 4 5 3.29 (7) 176.71 (7) =========================================================================== |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.27851 (17) | 0.81199 (11) | 0.92961 (10) | 0.0473 (4) | |
O1 | −0.20803 (17) | 0.63605 (12) | 0.98723 (10) | 0.0733 (4) | |
F1 | −0.02954 (18) | 0.50536 (13) | 1.36027 (10) | 0.1039 (5) | |
F2 | −0.42414 (16) | 0.85416 (12) | 0.63705 (10) | 0.1014 (5) | |
C2 | 0.3146 (2) | 0.70072 (14) | 1.00807 (14) | 0.0513 (4) | |
H2A | 0.3789 | 0.7077 | 1.0718 | 0.062* | |
H2B | 0.4009 | 0.6580 | 0.9744 | 0.062* | |
C3 | 0.1218 (2) | 0.64096 (13) | 1.04272 (14) | 0.0460 (4) | |
C4 | −0.0404 (2) | 0.67177 (14) | 0.96139 (14) | 0.0504 (4) | |
C5 | 0.0152 (2) | 0.74206 (13) | 0.84662 (13) | 0.0450 (4) | |
C6 | 0.2136 (2) | 0.79813 (14) | 0.82805 (13) | 0.0494 (4) | |
H6A | 0.3090 | 0.7528 | 0.8029 | 0.059* | |
H6B | 0.2050 | 0.8711 | 0.7715 | 0.059* | |
C7 | 0.4527 (2) | 0.88369 (14) | 0.91102 (14) | 0.0531 (4) | |
H7A | 0.5473 | 0.8608 | 0.8639 | 0.064* | |
H7B | 0.5140 | 0.8729 | 0.9809 | 0.064* | |
C8 | 0.4052 (3) | 1.00649 (15) | 0.85878 (14) | 0.0534 (5) | |
C9 | 0.5456 (3) | 1.07860 (18) | 0.79602 (17) | 0.0773 (6) | |
H9 | 0.6674 | 1.0505 | 0.7812 | 0.093* | |
C10 | 0.5070 (6) | 1.1944 (2) | 0.7540 (2) | 0.1077 (9) | |
H10 | 0.6032 | 1.2432 | 0.7120 | 0.129* | |
C11 | 0.3284 (7) | 1.2350 (2) | 0.7748 (2) | 0.1146 (11) | |
H11 | 0.3019 | 1.3117 | 0.7469 | 0.138* | |
C12 | 0.1887 (4) | 1.1639 (2) | 0.8362 (2) | 0.1007 (8) | |
H12 | 0.0666 | 1.1921 | 0.8501 | 0.121* | |
C13 | 0.2261 (3) | 1.05075 (17) | 0.87788 (17) | 0.0713 (6) | |
H13 | 0.1285 | 1.0030 | 0.9198 | 0.086* | |
C14 | 0.0847 (2) | 0.56488 (14) | 1.14056 (15) | 0.0548 (5) | |
H14 | −0.0447 | 0.5392 | 1.1546 | 0.066* | |
C15 | 0.2232 (2) | 0.51659 (14) | 1.22897 (15) | 0.0524 (4) | |
C16 | 0.1619 (3) | 0.48556 (17) | 1.33750 (17) | 0.0663 (5) | |
C17 | 0.2810 (4) | 0.43617 (19) | 1.42435 (18) | 0.0837 (6) | |
H17 | 0.2319 | 0.4170 | 1.4965 | 0.100* | |
C18 | 0.4741 (3) | 0.41584 (18) | 1.40188 (19) | 0.0804 (6) | |
H18 | 0.5586 | 0.3832 | 1.4593 | 0.096* | |
C19 | 0.5436 (3) | 0.44358 (16) | 1.29479 (19) | 0.0715 (6) | |
H19 | 0.6745 | 0.4287 | 1.2798 | 0.086* | |
C20 | 0.4199 (3) | 0.49336 (14) | 1.20967 (16) | 0.0619 (5) | |
H20 | 0.4689 | 0.5119 | 1.1376 | 0.074* | |
C21 | −0.1155 (2) | 0.75128 (14) | 0.76848 (14) | 0.0498 (4) | |
H21 | −0.2389 | 0.7199 | 0.7930 | 0.060* | |
C22 | −0.0894 (2) | 0.80438 (14) | 0.64938 (14) | 0.0509 (4) | |
C23 | −0.2488 (3) | 0.85146 (16) | 0.58508 (16) | 0.0650 (5) | |
C24 | −0.2382 (4) | 0.89583 (18) | 0.47290 (19) | 0.0832 (7) | |
H24 | −0.3495 | 0.9267 | 0.4335 | 0.100* | |
C25 | −0.0606 (4) | 0.89395 (19) | 0.41964 (18) | 0.0851 (7) | |
H25 | −0.0505 | 0.9232 | 0.3433 | 0.102* | |
C26 | 0.1030 (3) | 0.84889 (18) | 0.47902 (17) | 0.0801 (6) | |
H26 | 0.2240 | 0.8482 | 0.4428 | 0.096* | |
C27 | 0.0879 (3) | 0.80488 (16) | 0.59185 (15) | 0.0637 (5) | |
H27 | 0.2000 | 0.7745 | 0.6308 | 0.076* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0468 (7) | 0.0487 (8) | 0.0461 (8) | −0.0052 (6) | −0.0086 (6) | −0.0143 (7) |
O1 | 0.0423 (7) | 0.1033 (11) | 0.0658 (9) | −0.0083 (7) | −0.0004 (6) | −0.0156 (8) |
F1 | 0.0798 (8) | 0.1567 (13) | 0.0676 (8) | 0.0106 (8) | 0.0028 (6) | −0.0270 (8) |
F2 | 0.0582 (7) | 0.1426 (12) | 0.0905 (9) | 0.0144 (7) | −0.0214 (7) | −0.0189 (8) |
C2 | 0.0456 (9) | 0.0543 (11) | 0.0528 (10) | −0.0003 (8) | −0.0086 (8) | −0.0152 (9) |
C3 | 0.0440 (9) | 0.0485 (10) | 0.0473 (10) | 0.0010 (7) | −0.0008 (7) | −0.0181 (8) |
C4 | 0.0390 (9) | 0.0567 (11) | 0.0585 (12) | 0.0004 (8) | −0.0001 (8) | −0.0231 (9) |
C5 | 0.0413 (9) | 0.0474 (10) | 0.0502 (10) | 0.0045 (7) | −0.0034 (7) | −0.0211 (8) |
C6 | 0.0479 (9) | 0.0542 (10) | 0.0485 (10) | −0.0024 (8) | −0.0053 (7) | −0.0197 (8) |
C7 | 0.0497 (9) | 0.0575 (11) | 0.0553 (11) | −0.0058 (8) | −0.0064 (8) | −0.0219 (9) |
C8 | 0.0678 (12) | 0.0523 (11) | 0.0451 (10) | −0.0096 (9) | −0.0064 (9) | −0.0218 (9) |
C9 | 0.1022 (15) | 0.0686 (15) | 0.0628 (13) | −0.0219 (12) | 0.0098 (12) | −0.0236 (11) |
C10 | 0.180 (3) | 0.073 (2) | 0.0675 (16) | −0.0447 (19) | 0.0029 (18) | −0.0176 (14) |
C11 | 0.200 (3) | 0.0581 (17) | 0.093 (2) | 0.012 (2) | −0.059 (2) | −0.0290 (16) |
C12 | 0.124 (2) | 0.0733 (18) | 0.120 (2) | 0.0261 (16) | −0.0474 (18) | −0.0501 (16) |
C13 | 0.0785 (14) | 0.0644 (14) | 0.0801 (14) | 0.0057 (10) | −0.0166 (11) | −0.0346 (11) |
C14 | 0.0465 (9) | 0.0569 (11) | 0.0612 (12) | −0.0039 (8) | −0.0003 (8) | −0.0196 (10) |
C15 | 0.0543 (10) | 0.0445 (10) | 0.0564 (12) | −0.0065 (8) | −0.0046 (9) | −0.0130 (8) |
C16 | 0.0563 (11) | 0.0777 (14) | 0.0644 (14) | −0.0013 (10) | −0.0035 (10) | −0.0220 (11) |
C17 | 0.0973 (17) | 0.0941 (17) | 0.0563 (13) | −0.0017 (13) | −0.0136 (12) | −0.0184 (12) |
C18 | 0.0826 (16) | 0.0731 (15) | 0.0820 (17) | 0.0041 (11) | −0.0319 (13) | −0.0175 (12) |
C19 | 0.0643 (12) | 0.0576 (13) | 0.0844 (16) | −0.0003 (9) | −0.0135 (11) | −0.0106 (11) |
C20 | 0.0643 (12) | 0.0464 (11) | 0.0668 (12) | 0.0001 (8) | −0.0058 (10) | −0.0067 (9) |
C21 | 0.0422 (9) | 0.0518 (10) | 0.0590 (11) | −0.0001 (7) | −0.0071 (8) | −0.0221 (9) |
C22 | 0.0568 (10) | 0.0476 (10) | 0.0518 (11) | −0.0031 (8) | −0.0138 (8) | −0.0196 (8) |
C23 | 0.0550 (11) | 0.0720 (13) | 0.0673 (14) | −0.0009 (9) | −0.0164 (10) | −0.0205 (11) |
C24 | 0.0903 (16) | 0.0865 (16) | 0.0689 (16) | 0.0013 (12) | −0.0338 (13) | −0.0166 (13) |
C25 | 0.1170 (19) | 0.0876 (16) | 0.0518 (12) | −0.0026 (14) | −0.0164 (14) | −0.0226 (11) |
C26 | 0.0905 (15) | 0.0952 (17) | 0.0574 (14) | 0.0033 (12) | −0.0041 (11) | −0.0286 (12) |
C27 | 0.0699 (12) | 0.0716 (13) | 0.0551 (12) | 0.0083 (9) | −0.0100 (10) | −0.0276 (10) |
N1—C6 | 1.4551 (19) | C12—C13 | 1.370 (3) |
N1—C2 | 1.4567 (19) | C12—H12 | 0.9300 |
N1—C7 | 1.4612 (19) | C13—H13 | 0.9300 |
O1—C4 | 1.2223 (18) | C14—C15 | 1.465 (2) |
F1—C16 | 1.357 (2) | C14—H14 | 0.9300 |
F2—C23 | 1.348 (2) | C15—C16 | 1.372 (3) |
C2—C3 | 1.497 (2) | C15—C20 | 1.391 (2) |
C2—H2A | 0.9700 | C16—C17 | 1.370 (3) |
C2—H2B | 0.9700 | C17—C18 | 1.368 (3) |
C3—C14 | 1.328 (2) | C17—H17 | 0.9300 |
C3—C4 | 1.501 (2) | C18—C19 | 1.374 (3) |
C4—C5 | 1.491 (2) | C18—H18 | 0.9300 |
C5—C21 | 1.337 (2) | C19—C20 | 1.376 (2) |
C5—C6 | 1.502 (2) | C19—H19 | 0.9300 |
C6—H6A | 0.9700 | C20—H20 | 0.9300 |
C6—H6B | 0.9700 | C21—C22 | 1.463 (2) |
C7—C8 | 1.504 (2) | C21—H21 | 0.9300 |
C7—H7A | 0.9700 | C22—C23 | 1.386 (2) |
C7—H7B | 0.9700 | C22—C27 | 1.388 (2) |
C8—C9 | 1.370 (3) | C23—C24 | 1.366 (3) |
C8—C13 | 1.375 (3) | C24—C25 | 1.367 (3) |
C9—C10 | 1.402 (4) | C24—H24 | 0.9300 |
C9—H9 | 0.9300 | C25—C26 | 1.374 (3) |
C10—C11 | 1.358 (4) | C25—H25 | 0.9300 |
C10—H10 | 0.9300 | C26—C27 | 1.375 (3) |
C11—C12 | 1.353 (4) | C26—H26 | 0.9300 |
C11—H11 | 0.9300 | C27—H27 | 0.9300 |
C6—N1—C2 | 108.20 (13) | C12—C13—C8 | 121.1 (2) |
C6—N1—C7 | 111.83 (13) | C12—C13—H13 | 119.4 |
C2—N1—C7 | 111.85 (12) | C8—C13—H13 | 119.4 |
N1—C2—C3 | 109.17 (12) | C3—C14—C15 | 127.77 (15) |
N1—C2—H2A | 109.8 | C3—C14—H14 | 116.1 |
C3—C2—H2A | 109.8 | C15—C14—H14 | 116.1 |
N1—C2—H2B | 109.8 | C16—C15—C20 | 115.62 (16) |
C3—C2—H2B | 109.8 | C16—C15—C14 | 121.18 (16) |
H2A—C2—H2B | 108.3 | C20—C15—C14 | 123.11 (17) |
C14—C3—C2 | 124.42 (14) | F1—C16—C17 | 117.83 (19) |
C14—C3—C4 | 118.45 (14) | F1—C16—C15 | 117.70 (16) |
C2—C3—C4 | 117.12 (14) | C17—C16—C15 | 124.47 (19) |
O1—C4—C5 | 121.80 (14) | C18—C17—C16 | 118.1 (2) |
O1—C4—C3 | 121.17 (16) | C18—C17—H17 | 121.0 |
C5—C4—C3 | 116.93 (14) | C16—C17—H17 | 121.0 |
C21—C5—C4 | 117.70 (14) | C17—C18—C19 | 120.20 (19) |
C21—C5—C6 | 125.03 (16) | C17—C18—H18 | 119.9 |
C4—C5—C6 | 117.28 (13) | C19—C18—H18 | 119.9 |
N1—C6—C5 | 110.11 (13) | C18—C19—C20 | 120.09 (19) |
N1—C6—H6A | 109.6 | C18—C19—H19 | 120.0 |
C5—C6—H6A | 109.6 | C20—C19—H19 | 120.0 |
N1—C6—H6B | 109.6 | C19—C20—C15 | 121.52 (19) |
C5—C6—H6B | 109.6 | C19—C20—H20 | 119.2 |
H6A—C6—H6B | 108.2 | C15—C20—H20 | 119.2 |
N1—C7—C8 | 112.87 (13) | C5—C21—C22 | 128.35 (16) |
N1—C7—H7A | 109.0 | C5—C21—H21 | 115.8 |
C8—C7—H7A | 109.0 | C22—C21—H21 | 115.8 |
N1—C7—H7B | 109.0 | C23—C22—C27 | 115.28 (16) |
C8—C7—H7B | 109.0 | C23—C22—C21 | 120.75 (17) |
H7A—C7—H7B | 107.8 | C27—C22—C21 | 123.82 (15) |
C9—C8—C13 | 118.18 (19) | F2—C23—C24 | 118.37 (17) |
C9—C8—C7 | 120.25 (18) | F2—C23—C22 | 117.63 (17) |
C13—C8—C7 | 121.45 (17) | C24—C23—C22 | 124.0 (2) |
C8—C9—C10 | 120.5 (2) | C23—C24—C25 | 118.71 (19) |
C8—C9—H9 | 119.8 | C23—C24—H24 | 120.6 |
C10—C9—H9 | 119.8 | C25—C24—H24 | 120.6 |
C11—C10—C9 | 119.6 (3) | C24—C25—C26 | 120.0 (2) |
C11—C10—H10 | 120.2 | C24—C25—H25 | 120.0 |
C9—C10—H10 | 120.2 | C26—C25—H25 | 120.0 |
C12—C11—C10 | 120.1 (3) | C25—C26—C27 | 120.1 (2) |
C12—C11—H11 | 119.9 | C25—C26—H26 | 120.0 |
C10—C11—H11 | 119.9 | C27—C26—H26 | 120.0 |
C11—C12—C13 | 120.5 (3) | C26—C27—C22 | 121.99 (18) |
C11—C12—H12 | 119.8 | C26—C27—H27 | 119.0 |
C13—C12—H12 | 119.8 | C22—C27—H27 | 119.0 |
C6—N1—C2—C3 | −69.01 (16) | C4—C3—C14—C15 | 175.34 (16) |
C7—N1—C2—C3 | 167.39 (13) | C3—C14—C15—C16 | 147.49 (19) |
N1—C2—C3—C14 | −149.89 (16) | C3—C14—C15—C20 | −36.2 (3) |
N1—C2—C3—C4 | 28.8 (2) | C20—C15—C16—F1 | −179.24 (16) |
C14—C3—C4—O1 | 6.7 (2) | C14—C15—C16—F1 | −2.6 (3) |
C2—C3—C4—O1 | −172.07 (15) | C20—C15—C16—C17 | 0.9 (3) |
C14—C3—C4—C5 | −169.87 (14) | C14—C15—C16—C17 | 177.48 (18) |
C2—C3—C4—C5 | 11.4 (2) | F1—C16—C17—C18 | 179.90 (19) |
O1—C4—C5—C21 | −9.8 (2) | C15—C16—C17—C18 | −0.2 (3) |
C3—C4—C5—C21 | 166.67 (14) | C16—C17—C18—C19 | −0.7 (3) |
O1—C4—C5—C6 | 169.55 (15) | C17—C18—C19—C20 | 0.9 (3) |
C3—C4—C5—C6 | −13.9 (2) | C18—C19—C20—C15 | −0.2 (3) |
C2—N1—C6—C5 | 66.60 (16) | C16—C15—C20—C19 | −0.7 (3) |
C7—N1—C6—C5 | −169.78 (12) | C14—C15—C20—C19 | −177.20 (17) |
C21—C5—C6—N1 | 155.39 (15) | C4—C5—C21—C22 | −172.85 (15) |
C4—C5—C6—N1 | −23.94 (19) | C6—C5—C21—C22 | 7.8 (3) |
C6—N1—C7—C8 | 75.65 (17) | C5—C21—C22—C23 | −151.13 (17) |
C2—N1—C7—C8 | −162.82 (14) | C5—C21—C22—C27 | 33.5 (3) |
N1—C7—C8—C9 | −153.28 (15) | C27—C22—C23—F2 | −179.31 (16) |
N1—C7—C8—C13 | 30.8 (2) | C21—C22—C23—F2 | 5.0 (3) |
C13—C8—C9—C10 | 0.8 (3) | C27—C22—C23—C24 | 0.1 (3) |
C7—C8—C9—C10 | −175.21 (17) | C21—C22—C23—C24 | −175.57 (17) |
C8—C9—C10—C11 | −0.7 (3) | F2—C23—C24—C25 | 179.65 (19) |
C9—C10—C11—C12 | 0.2 (4) | C22—C23—C24—C25 | 0.2 (3) |
C10—C11—C12—C13 | 0.1 (4) | C23—C24—C25—C26 | −0.5 (3) |
C11—C12—C13—C8 | 0.1 (3) | C24—C25—C26—C27 | 0.5 (3) |
C9—C8—C13—C12 | −0.5 (3) | C25—C26—C27—C22 | −0.2 (3) |
C7—C8—C13—C12 | 175.46 (17) | C23—C22—C27—C26 | −0.2 (3) |
C2—C3—C14—C15 | −6.0 (3) | C21—C22—C27—C26 | 175.40 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14···O1 | 0.93 | 2.40 | 2.772 (2) | 104 |
C21—H21···O1 | 0.93 | 2.39 | 2.768 (2) | 104 |
C7—H7B···Cg2i | 0.97 | 2.78 | 3.7315 (19) | 168 |
C13—H13···N1 | 0.93 | 2.56 | 2.873 (3) | 100 |
Symmetry code: (i) −x+1, −y+2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C26H21F2NO |
Mr | 401.44 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 6.7738 (4), 12.5652 (7), 12.8535 (7) |
α, β, γ (°) | 71.051 (1), 88.057 (2), 89.117 (2) |
V (Å3) | 1034.12 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.19 × 0.18 × 0.12 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.966, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13326, 4281, 2531 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.636 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.135, 1.12 |
No. of reflections | 4281 |
No. of parameters | 271 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.16, −0.15 |
Computer programs: APEX2 (Bruker, 2004), SAINT-Plus (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14···O1 | 0.93 | 2.40 | 2.772 (2) | 104 |
C21—H21···O1 | 0.93 | 2.39 | 2.768 (2) | 104 |
C7—H7B···Cg2i | 0.97 | 2.78 | 3.7315 (19) | 168 |
C13—H13···N1 | 0.93 | 2.56 | 2.873 (3) | 100 |
Symmetry code: (i) −x+1, −y+2, −z+2. |
Acknowledgements
RSR thanks the Council for Scientific and Industrial Research, New Delhi, for funding under the scientist's pool scheme, and the Bioinformatics Infrastructure Facility of the University of Hyderabad, Hyderabad for computational resources.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Derivatives of 3,5-diarylidene-4-piperidones (D4P) are pharmaceutically important compounds (Krapcho & Turk, 1979; Das et al., 2007). During our investigations on D4P, a series of compounds were prepared. The molecular and crystal structure of title compound (3E,5E)-1-benzyl-3,5-bis[(2-fluorophenyl)methylidene]piperidin-4-one, (I), is reported here.
The molecular structure of I with atom numbering scheme is shown in Fig. 1. The 3,5-diene moieties possess E-configuration. The 3,5-difluorophenyl substituents of the piperidinone ring are stretched out on either side with following values of torsion angles: C4–C3–C14–C15 = 175.34 (16)°, C3–C14–C15–C16 = 147.49 (19)°, C4–C5–C21–C22 = -172.85 (15)°, and C5–C21–C22–C23 = -151.13 (17)°. The dihedral angle of 3,5-difluorophenyl units is 3.29 (7)°. The dihedral angles between of benzene rings of 3- and 5-substitutens with respect to the corresponding ring of 1-benzyl substituent are 58.65 (7)° and 56.90 (7)°, respectively.
The sp2 hybridized C3, C4 and C5 atoms give rise to a sofa-conformation of the six-membered piperidinone ring as also observed in the structures of related compounds, namely, (R)-3,5-Bis[(E)-benzylidene]-1-(1-phenylethyl)piperidin-4-one, 3,5-bis[(E)-4-chlorobenzylidene]-1-[(R)-1-phenylethyl] piperidin-4-one, and 3,5-bis[(E)-2-chlorobenzylidene]-1-[(R)-1-phenylethyl] piperidin-4-one (Suresh et al., 2007). In the sofa conformation, the N1 atom is -0.781 (1)Å shifted out of the base plane (C2/C3/C4/C5/C6). The deviation of the ring from ideal sofa-conformation, ΔC2 (Duax et al., 1976) is 3.4°. The Cremer and Pople (Cremer & Pople, 1975) puckering parameters, corresponding to the ring conformation are as follows: q2 = 0.5432 (16)Å, q3 = 0.2577 (17)Å, φ = 3.14 (18)°, θ = 64.62 (16)°, and total puckering amplitude Q = 0.6012 (16)Å. The benzyl substituent is in equatorial position of piperidinone ring and its conformation is described by the following torsion angles: C2–N1–C7–C8 = -162.82 (14)° and N1–C7–C8–C9 = -153.28 (15)°. The N1-benzyl group is disposed towards C6 substituent of the piperidin-4-one ring, a feature that varies among related structures.
The observed inter- and intra-molecular interactions are listed in Table 1. The adjacent H14 and H21 atoms participate in intra-molecular C14–H14···O1···H21–C21 interaction scheme. The crystal packing is characterized by C–H···π hydrogen-bonded dimers. The methylene and aromatic groups of the N1-benzyl substituent participate in the interaction forming C7–H7B···Cg2i with symmetry code: (i) -x+1, -y+2, -z+2. The Cg2 is the centroid of (C8-C13) ring. The observed geometry of C–H···π interaction in I is in the range, reported by the Nishio and coworkers (Nishio et al., 2009). Crystal packing is shown in Fig. 2.