organic compounds
(Z)-Isobutyl 2-benzamido-3-(4-chlorophenyl)acrylate
aCollege of Chemistry and Chemical Engineering, Guangxi Normal University, Guilin 541004, People's Republic of China
*Correspondence e-mail: edward_su75@163.com
The title compound, C20H20ClNO3, is a α-amino acid derivative which displays a Z configuration about the C=C double bond. The dihedral angle betwen the aromatic rings is 87.75 (12)°. The molecular conformation is stabilized by an intramolecular C—H⋯N hydrogen bond. In the centrosymmetrically related molecules interact through intermolecular C—H⋯O hydrogen-bond interactions, forming dimers. The dimers are further linked into chains parallel to the a axis by N—H⋯O hydrogen bonds. The methyl groups of the isopropyl group are disordered over two positions with occupancy factors of 0.5.
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku/MSC, 2000); cell CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536809043931/rz2372sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536809043931/rz2372Isup2.hkl
Compound B (Fig. 3): to a 100 ml round-bottomed flask was added 1.4 g (1.18 ml, 0.01 mol) of redistilled 4-chlorobenzaldehyde, 1.79 g (0.01 mol) of benzoylglycine, 3.1 g (2.8 ml, 0.03 mol) of acetic anhydride and 0.82 g (0.01 mol) of anhydrous sodium acetate, and the mixture was heated on an electric hotplace with constant shaking. Once liquefied completely, the round-bottomed flask was transferred to a water bath and heated at 100 °C for 2 h, then 16 ml of ethanol was added slowly to the flask and the mixture allowed to stand overnight. The crystalline product was filtered with suction, washed twice with 25 ml of ice-cold alcohol and twice with 25 ml of boiling water and dried to afford 1.91 g of pure compound B (yield 64%).
Compound C (Fig. 3): to a 0.1% solution of sodium methoxide in absolute methanol (40 ml) was added 2.1 g of compound B (3.52 mmol). The mixture was heated to 75 °C under vigorously stirring until TLC analysis indicated that the starting material had disappeared (about 2 h). The product was collected by vacuum filtration and washed with small portions of cold methanol to afford 2.16 g of compound C as a white solid (yield 92%).
Title compound (D, Fig. 3): to a 100 ml round-bottomed flask was added 0.303 g (1.0 mmol) of compound C, 9.9 g (10 ml, 0.13 mol) of redistilled isobutanol, 10 ml of redistilled cyclohexane and 2 ml of concentrated sulfuric acid under stirring. The mixture was refluxed 4 h with stirring, then cooled and the product extracted with chloroform (2× 15 ml). The combined organic layer was dried over MgSO4, filtered and the solvent removed under reduced pressure to afford 0.293 g of the title compound as a white solid (yield 81%). Crystals suitable for X-ray analysis were obtained by slow evaporation of a dichloromethane-ethanol solution (1:2 v/v). IR 3837, 3745, 3648, 3165, 1737. 1H NMR (DMSO-d6, 500 MHz) δ 0.85 (d, 6H, J=6.75 Hz); 1.86 (m, 1H); 3.91 (d, 2H, J=6.4 Hz); 7.38 (s, 1H); 7.46 (d, 2H, J=8.5 Hz); 7.49–7.53 (m, 2H); 7.57–7.59 (m, 1H); 7.68 (d, 2H, J=8.5 Hz); 7.93 (d, 2H, J=7.1 Hz); 10.0 (s, 1H). 13C NMR (DMSO-d6, 125.8 MHz) δ 18.7, 27.2, 70.7, 127.4, 127.5, 128.4, 128.6, 131.3, 131.6, 131.8, 132.3, 133.2, 133.9, 164.8, 166.4.
The H atom on C18 was located in a difference Fourier map and refined isotropically. Other H atom were positioned geometrically and included in the
in the riding-model approximation, with C—H = 0.93–0.97 Å, N—H = 0.86 Å, and with Uĩso~(H) = 1.5U~eq~(C, N). The methyl groups C19 and C20 of the isopropyl group are disordered over two positions with occupancy factors of 0.5 and were refined isotropically. The C—C distances within the isopropyl group were restrained to be 1.54 (1) Å.As part of a study on the effect of the conformationally restricted molecular substitution on the crystal structures of biologically important class of compounds, we report herein the α-amino acids are generally highly flexible molecules that exist in solution in a dynamic equilibrium of interchanging conformations. As a consequence, most natural α-amino acids with physiological activity cannot be used for therapeutic purposes so we developed the introduction of conformational constrains. In comparison with native α-amino acids, side chain restricted analogues usually display more favorable pharmacological properties (Jiménez et al., 2000; Peggion et al., 2003).
of the title compound. Small and mediumThe molecule of the title compound (Fig. 1) displays a Z configuration about the C2C3 double bond. The
is enforced by an intramolecular C—H···N hydrogen bond (Table 1). The C19 and C20 methyl groups of the isopropyl group are disordered over two positions with occupancy factors of 0.5. The dihedral angle formed by the aromatic rings is 87.75 (12)°. In the crystal packing, centrosymmetrically related molecules are linked into dimers by intermolecular C—H···O hydrogen bonds. The dimers are further connected by N—H···O hydrogen bonds to form chains parallel to the a axis (Fig. 2).For the synthesis and
of related compounds, see: Jiménez et al. (2000); Peggion et al. (2003).Data collection: CrystalClear (Rigaku/MSC, 2000); cell
CrystalClear (Rigaku/MSC, 2000); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C20H20ClNO3 | Z = 2 |
Mr = 357.82 | F(000) = 376 |
Triclinic, P1 | Dx = 1.271 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71070 Å |
a = 5.0179 (10) Å | Cell parameters from 2536 reflections |
b = 12.581 (2) Å | θ = 3.3–25.3° |
c = 16.293 (3) Å | µ = 0.22 mm−1 |
α = 67.623 (11)° | T = 293 K |
β = 83.991 (15)° | Block, colourless |
γ = 79.548 (14)° | 0.50 × 0.40 × 0.25 mm |
V = 934.6 (3) Å3 |
Rigaku AFC-7S Mercury diffractometer | 3380 independent reflections |
Radiation source: fine-focus sealed tube | 2224 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
Detector resolution: 7.31 pixels mm-1 | θmax = 25.4°, θmin = 3.3° |
ω scans | h = −6→5 |
Absorption correction: multi-scan (REQAB; Jacobson, 1998) | k = −15→15 |
Tmin = 0.897, Tmax = 0.946 | l = −19→19 |
9082 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.073 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.213 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0999P)2 + 0.2158P] where P = (Fo2 + 2Fc2)/3 |
3380 reflections | (Δ/σ)max < 0.001 |
231 parameters | Δρmax = 0.40 e Å−3 |
5 restraints | Δρmin = −0.37 e Å−3 |
C20H20ClNO3 | γ = 79.548 (14)° |
Mr = 357.82 | V = 934.6 (3) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.0179 (10) Å | Mo Kα radiation |
b = 12.581 (2) Å | µ = 0.22 mm−1 |
c = 16.293 (3) Å | T = 293 K |
α = 67.623 (11)° | 0.50 × 0.40 × 0.25 mm |
β = 83.991 (15)° |
Rigaku AFC-7S Mercury diffractometer | 3380 independent reflections |
Absorption correction: multi-scan (REQAB; Jacobson, 1998) | 2224 reflections with I > 2σ(I) |
Tmin = 0.897, Tmax = 0.946 | Rint = 0.036 |
9082 measured reflections |
R[F2 > 2σ(F2)] = 0.073 | 5 restraints |
wR(F2) = 0.213 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | Δρmax = 0.40 e Å−3 |
3380 reflections | Δρmin = −0.37 e Å−3 |
231 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl1 | 1.2590 (3) | 0.91744 (12) | 0.10142 (11) | 0.1191 (6) | |
O1 | 0.3603 (6) | 0.3847 (3) | 0.09779 (16) | 0.0827 (9) | |
O2 | 0.4837 (5) | 0.2561 (2) | 0.23066 (16) | 0.0671 (7) | |
O3 | 0.2050 (4) | 0.4200 (2) | 0.31239 (15) | 0.0632 (7) | |
N1 | 0.6503 (5) | 0.4156 (2) | 0.27693 (15) | 0.0447 (7) | |
H1 | 0.8097 | 0.4099 | 0.2946 | 0.054* | |
C1 | 0.4725 (7) | 0.3599 (3) | 0.1656 (2) | 0.0535 (9) | |
C2 | 0.6145 (6) | 0.4408 (3) | 0.18535 (19) | 0.0469 (8) | |
C3 | 0.7106 (7) | 0.5258 (3) | 0.1182 (2) | 0.0512 (8) | |
H3 | 0.6848 | 0.5267 | 0.0622 | 0.061* | |
C4 | 0.8503 (7) | 0.6182 (3) | 0.1178 (2) | 0.0502 (8) | |
C5 | 1.0086 (9) | 0.6722 (4) | 0.0447 (2) | 0.0761 (12) | |
H5 | 1.0296 | 0.6466 | −0.0025 | 0.091* | |
C6 | 1.1369 (10) | 0.7627 (4) | 0.0391 (3) | 0.0880 (14) | |
H6 | 1.2450 | 0.7968 | −0.0107 | 0.106* | |
C7 | 1.1039 (8) | 0.8020 (3) | 0.1076 (3) | 0.0712 (11) | |
C8 | 0.9483 (10) | 0.7509 (4) | 0.1812 (3) | 0.0811 (13) | |
H8 | 0.9275 | 0.7775 | 0.2279 | 0.097* | |
C9 | 0.8221 (9) | 0.6602 (3) | 0.1863 (2) | 0.0709 (11) | |
H9 | 0.7157 | 0.6261 | 0.2366 | 0.085* | |
C10 | 0.4399 (6) | 0.4007 (3) | 0.33605 (19) | 0.0448 (8) | |
C11 | 0.5016 (6) | 0.3597 (3) | 0.43160 (19) | 0.0476 (8) | |
C12 | 0.7329 (8) | 0.2865 (3) | 0.4664 (2) | 0.0645 (10) | |
H12 | 0.8642 | 0.2623 | 0.4298 | 0.077* | |
C13 | 0.7701 (10) | 0.2483 (4) | 0.5579 (3) | 0.0851 (14) | |
H13 | 0.9260 | 0.1981 | 0.5825 | 0.102* | |
C14 | 0.5761 (11) | 0.2853 (5) | 0.6111 (3) | 0.0839 (14) | |
H14 | 0.6008 | 0.2595 | 0.6718 | 0.101* | |
C15 | 0.3528 (11) | 0.3577 (5) | 0.5768 (3) | 0.0859 (13) | |
H15 | 0.2245 | 0.3834 | 0.6133 | 0.103* | |
C16 | 0.3112 (8) | 0.3944 (4) | 0.4881 (2) | 0.0680 (11) | |
H16 | 0.1523 | 0.4436 | 0.4652 | 0.082* | |
C17 | 0.3195 (10) | 0.1773 (4) | 0.2212 (3) | 0.0856 (14) | |
H17A | 0.3550 | 0.1721 | 0.1631 | 0.103* | |
H17B | 0.1285 | 0.2063 | 0.2268 | 0.103* | |
C18 | 0.3886 (8) | 0.0619 (4) | 0.2908 (3) | 0.0781 (12) | |
H18 | 0.275 (6) | 0.012 (3) | 0.281 (2) | 0.073 (11)* | |
C19 | 0.669 (2) | 0.0005 (11) | 0.3151 (8) | 0.107 (2)* | 0.50 |
H19A | 0.7628 | 0.0472 | 0.3336 | 0.160* | 0.50 |
H19B | 0.7638 | −0.0122 | 0.2646 | 0.160* | 0.50 |
H19C | 0.6603 | −0.0729 | 0.3629 | 0.160* | 0.50 |
C19' | 0.662 (2) | 0.0186 (11) | 0.2528 (8) | 0.107 (2)* | 0.50 |
H19D | 0.7984 | 0.0599 | 0.2579 | 0.160* | 0.50 |
H19E | 0.6450 | 0.0320 | 0.1913 | 0.160* | 0.50 |
H19F | 0.7126 | −0.0632 | 0.2853 | 0.160* | 0.50 |
C20 | 0.262 (2) | 0.0812 (11) | 0.3758 (7) | 0.101 (2)* | 0.50 |
H20A | 0.2481 | 0.0073 | 0.4224 | 0.152* | 0.50 |
H20B | 0.0847 | 0.1264 | 0.3638 | 0.152* | 0.50 |
H20C | 0.3748 | 0.1218 | 0.3937 | 0.152* | 0.50 |
C20' | 0.422 (2) | 0.0469 (11) | 0.3842 (7) | 0.101 (2)* | 0.50 |
H20D | 0.4701 | −0.0342 | 0.4191 | 0.152* | 0.50 |
H20E | 0.2546 | 0.0770 | 0.4076 | 0.152* | 0.50 |
H20F | 0.5625 | 0.0883 | 0.3862 | 0.152* | 0.50 |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.1242 (12) | 0.0830 (9) | 0.1589 (14) | −0.0548 (8) | −0.0204 (10) | −0.0333 (9) |
O1 | 0.116 (2) | 0.088 (2) | 0.0517 (14) | −0.0472 (18) | −0.0216 (15) | −0.0154 (14) |
O2 | 0.0817 (18) | 0.0547 (16) | 0.0676 (15) | −0.0262 (13) | −0.0179 (13) | −0.0148 (13) |
O3 | 0.0374 (13) | 0.0924 (19) | 0.0553 (13) | −0.0180 (12) | −0.0059 (10) | −0.0178 (13) |
N1 | 0.0384 (13) | 0.0568 (17) | 0.0390 (13) | −0.0168 (12) | −0.0038 (11) | −0.0129 (12) |
C1 | 0.057 (2) | 0.059 (2) | 0.0469 (18) | −0.0184 (17) | −0.0037 (16) | −0.0170 (17) |
C2 | 0.0462 (18) | 0.056 (2) | 0.0393 (16) | −0.0155 (15) | −0.0004 (13) | −0.0148 (15) |
C3 | 0.057 (2) | 0.059 (2) | 0.0412 (16) | −0.0174 (17) | −0.0015 (14) | −0.0190 (16) |
C4 | 0.0516 (19) | 0.052 (2) | 0.0432 (16) | −0.0101 (16) | −0.0044 (14) | −0.0117 (15) |
C5 | 0.095 (3) | 0.078 (3) | 0.059 (2) | −0.039 (2) | 0.018 (2) | −0.024 (2) |
C6 | 0.096 (3) | 0.086 (3) | 0.084 (3) | −0.051 (3) | 0.024 (2) | −0.025 (3) |
C7 | 0.066 (2) | 0.056 (2) | 0.090 (3) | −0.018 (2) | −0.016 (2) | −0.017 (2) |
C8 | 0.117 (4) | 0.062 (3) | 0.072 (3) | −0.030 (3) | −0.012 (3) | −0.024 (2) |
C9 | 0.098 (3) | 0.063 (2) | 0.056 (2) | −0.034 (2) | 0.005 (2) | −0.0187 (18) |
C10 | 0.0439 (18) | 0.0495 (19) | 0.0404 (16) | −0.0147 (15) | −0.0017 (14) | −0.0124 (14) |
C11 | 0.0487 (19) | 0.051 (2) | 0.0432 (16) | −0.0219 (16) | −0.0031 (15) | −0.0103 (15) |
C12 | 0.061 (2) | 0.069 (3) | 0.0494 (18) | −0.0140 (19) | −0.0051 (17) | −0.0045 (18) |
C13 | 0.082 (3) | 0.087 (3) | 0.066 (2) | −0.024 (3) | −0.027 (2) | 0.004 (2) |
C14 | 0.105 (4) | 0.103 (4) | 0.047 (2) | −0.054 (3) | −0.002 (2) | −0.016 (2) |
C15 | 0.105 (4) | 0.103 (4) | 0.055 (2) | −0.029 (3) | 0.004 (2) | −0.031 (2) |
C16 | 0.069 (2) | 0.085 (3) | 0.053 (2) | −0.015 (2) | 0.0020 (18) | −0.028 (2) |
C17 | 0.104 (3) | 0.068 (3) | 0.092 (3) | −0.044 (3) | −0.022 (3) | −0.019 (2) |
C18 | 0.067 (3) | 0.060 (3) | 0.112 (3) | −0.020 (2) | −0.014 (2) | −0.029 (2) |
Cl1—C7 | 1.734 (4) | C13—C14 | 1.371 (7) |
O1—C1 | 1.200 (4) | C13—H13 | 0.9300 |
O2—C1 | 1.328 (4) | C14—C15 | 1.331 (7) |
O2—C17 | 1.458 (4) | C14—H14 | 0.9300 |
O3—C10 | 1.232 (4) | C15—C16 | 1.365 (5) |
N1—C10 | 1.341 (4) | C15—H15 | 0.9300 |
N1—C2 | 1.426 (4) | C16—H16 | 0.9300 |
N1—H1 | 0.8600 | C17—C18 | 1.470 (6) |
C1—C2 | 1.485 (5) | C17—H17A | 0.9700 |
C2—C3 | 1.327 (4) | C17—H17B | 0.9700 |
C3—C4 | 1.459 (5) | C18—C20' | 1.483 (10) |
C3—H3 | 0.9300 | C18—C19 | 1.490 (10) |
C4—C5 | 1.375 (5) | C18—C19' | 1.540 (11) |
C4—C9 | 1.390 (5) | C18—C20 | 1.546 (10) |
C5—C6 | 1.377 (6) | C18—H18 | 0.99 (3) |
C5—H5 | 0.9300 | C19—H19A | 0.9600 |
C6—C7 | 1.367 (6) | C19—H19B | 0.9600 |
C6—H6 | 0.9300 | C19—H19C | 0.9600 |
C7—C8 | 1.363 (6) | C19'—H19D | 0.9600 |
C8—C9 | 1.375 (5) | C19'—H19E | 0.9600 |
C8—H8 | 0.9300 | C19'—H19F | 0.9600 |
C9—H9 | 0.9300 | C20—H20A | 0.9600 |
C10—C11 | 1.489 (4) | C20—H20B | 0.9600 |
C11—C12 | 1.367 (5) | C20—H20C | 0.9600 |
C11—C16 | 1.386 (5) | C20'—H20D | 0.9600 |
C12—C13 | 1.404 (5) | C20'—H20E | 0.9600 |
C12—H12 | 0.9300 | C20'—H20F | 0.9600 |
C1—O2—C17 | 116.2 (3) | C13—C14—H14 | 119.7 |
C10—N1—C2 | 121.2 (2) | C14—C15—C16 | 120.3 (4) |
C10—N1—H1 | 119.4 | C14—C15—H15 | 119.8 |
C2—N1—H1 | 119.4 | C16—C15—H15 | 119.8 |
O1—C1—O2 | 123.0 (3) | C15—C16—C11 | 121.1 (4) |
O1—C1—C2 | 123.9 (3) | C15—C16—H16 | 119.4 |
O2—C1—C2 | 113.1 (3) | C11—C16—H16 | 119.4 |
C3—C2—N1 | 124.9 (3) | O2—C17—C18 | 108.7 (3) |
C3—C2—C1 | 118.8 (3) | O2—C17—H17A | 110.0 |
N1—C2—C1 | 116.2 (3) | C18—C17—H17A | 110.0 |
C2—C3—C4 | 130.6 (3) | O2—C17—H17B | 110.0 |
C2—C3—H3 | 114.7 | C18—C17—H17B | 110.0 |
C4—C3—H3 | 114.7 | H17A—C17—H17B | 108.3 |
C5—C4—C9 | 116.9 (3) | C17—C18—C20' | 122.0 (6) |
C5—C4—C3 | 119.6 (3) | C17—C18—C19 | 125.4 (6) |
C9—C4—C3 | 123.4 (3) | C20'—C18—C19 | 72.4 (7) |
C4—C5—C6 | 122.2 (4) | C17—C18—C19' | 100.6 (6) |
C4—C5—H5 | 118.9 | C20'—C18—C19' | 108.9 (7) |
C6—C5—H5 | 118.9 | C17—C18—C20 | 102.6 (6) |
C7—C6—C5 | 119.3 (4) | C19—C18—C20 | 104.4 (7) |
C7—C6—H6 | 120.3 | C19'—C18—C20 | 140.7 (7) |
C5—C6—H6 | 120.3 | C17—C18—H18 | 105 (2) |
C8—C7—C6 | 120.3 (4) | C20'—C18—H18 | 117 (2) |
C8—C7—Cl1 | 119.5 (3) | C19—C18—H18 | 112 (2) |
C6—C7—Cl1 | 120.2 (3) | C19'—C18—H18 | 99 (2) |
C7—C8—C9 | 119.9 (4) | C20—C18—H18 | 105 (2) |
C7—C8—H8 | 120.0 | C18—C19—H19A | 109.5 |
C9—C8—H8 | 120.0 | C18—C19—H19B | 109.5 |
C8—C9—C4 | 121.4 (4) | C18—C19—H19C | 109.5 |
C8—C9—H9 | 119.3 | C18—C19'—H19D | 109.5 |
C4—C9—H9 | 119.3 | C18—C19'—H19E | 109.5 |
O3—C10—N1 | 121.4 (3) | H19D—C19'—H19E | 109.5 |
O3—C10—C11 | 121.2 (3) | C18—C19'—H19F | 109.5 |
N1—C10—C11 | 117.3 (3) | H19D—C19'—H19F | 109.5 |
C12—C11—C16 | 118.7 (3) | H19E—C19'—H19F | 109.5 |
C12—C11—C10 | 123.0 (3) | C18—C20—H20A | 109.5 |
C16—C11—C10 | 118.3 (3) | C18—C20—H20B | 109.5 |
C11—C12—C13 | 119.3 (4) | C18—C20—H20C | 109.5 |
C11—C12—H12 | 120.4 | C18—C20'—H20D | 109.5 |
C13—C12—H12 | 120.4 | C18—C20'—H20E | 109.5 |
C14—C13—C12 | 119.9 (4) | H20D—C20'—H20E | 109.5 |
C14—C13—H13 | 120.1 | C18—C20'—H20F | 109.5 |
C12—C13—H13 | 120.1 | H20D—C20'—H20F | 109.5 |
C15—C14—C13 | 120.6 (4) | H20E—C20'—H20F | 109.5 |
C15—C14—H14 | 119.7 | ||
C17—O2—C1—O1 | −8.2 (5) | C3—C4—C9—C8 | −177.0 (4) |
C17—O2—C1—C2 | 172.3 (3) | C2—N1—C10—O3 | −7.7 (5) |
C10—N1—C2—C3 | 130.9 (4) | C2—N1—C10—C11 | 172.3 (3) |
C10—N1—C2—C1 | −52.9 (4) | O3—C10—C11—C12 | 147.3 (4) |
O1—C1—C2—C3 | −25.4 (5) | N1—C10—C11—C12 | −32.7 (5) |
O2—C1—C2—C3 | 154.1 (3) | O3—C10—C11—C16 | −30.4 (5) |
O1—C1—C2—N1 | 158.2 (3) | N1—C10—C11—C16 | 149.6 (3) |
O2—C1—C2—N1 | −22.3 (4) | C16—C11—C12—C13 | 0.3 (5) |
N1—C2—C3—C4 | −5.6 (6) | C10—C11—C12—C13 | −177.4 (3) |
C1—C2—C3—C4 | 178.3 (3) | C11—C12—C13—C14 | −0.5 (6) |
C2—C3—C4—C5 | 158.4 (4) | C12—C13—C14—C15 | −0.4 (7) |
C2—C3—C4—C9 | −25.0 (6) | C13—C14—C15—C16 | 1.3 (7) |
C9—C4—C5—C6 | 0.7 (6) | C14—C15—C16—C11 | −1.5 (7) |
C3—C4—C5—C6 | 177.5 (4) | C12—C11—C16—C15 | 0.6 (6) |
C4—C5—C6—C7 | −1.0 (7) | C10—C11—C16—C15 | 178.5 (3) |
C5—C6—C7—C8 | 0.8 (7) | C1—O2—C17—C18 | 171.3 (3) |
C5—C6—C7—Cl1 | −178.9 (4) | O2—C17—C18—C20' | 43.9 (8) |
C6—C7—C8—C9 | −0.5 (7) | O2—C17—C18—C19 | −46.5 (8) |
Cl1—C7—C8—C9 | 179.3 (3) | O2—C17—C18—C19' | −76.4 (6) |
C7—C8—C9—C4 | 0.3 (7) | O2—C17—C18—C20 | 71.7 (6) |
C5—C4—C9—C8 | −0.4 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···O1i | 0.93 | 2.43 | 3.299 (4) | 155 |
N1—H1···O3ii | 0.86 | 2.07 | 2.916 (3) | 169 |
C9—H9···N1 | 0.93 | 2.55 | 3.103 (4) | 119 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C20H20ClNO3 |
Mr | 357.82 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 5.0179 (10), 12.581 (2), 16.293 (3) |
α, β, γ (°) | 67.623 (11), 83.991 (15), 79.548 (14) |
V (Å3) | 934.6 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.22 |
Crystal size (mm) | 0.50 × 0.40 × 0.25 |
Data collection | |
Diffractometer | Rigaku AFC-7S Mercury |
Absorption correction | Multi-scan (REQAB; Jacobson, 1998) |
Tmin, Tmax | 0.897, 0.946 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9082, 3380, 2224 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.073, 0.213, 1.10 |
No. of reflections | 3380 |
No. of parameters | 231 |
No. of restraints | 5 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.40, −0.37 |
Computer programs: CrystalClear (Rigaku/MSC, 2000), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···O1i | 0.93 | 2.43 | 3.299 (4) | 155.2 |
N1—H1···O3ii | 0.86 | 2.07 | 2.916 (3) | 168.8 |
C9—H9···N1 | 0.93 | 2.55 | 3.103 (4) | 118.6 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) x+1, y, z. |
Acknowledgements
The authors thank the Natural Science Foundation of Guangxi Zhuang Autonomous Region (grant No. 0731054)
References
Jacobson, R. (1998). REQAB. Private communication to the Rigaku Corporation, Tokyo, Japan. Google Scholar
Jiménez, A. I., Cativiela, C., Gómez-Catalán, J., Pérez, J. J. & Aubry, A. C. (2000). J. Am. Chem. Soc. 122, 5811–5821. Google Scholar
Peggion, C., Formaggio, F., Crisma, M., Toniolo, C., Jiménez, A. I., Cativiela, C., Kaptein, B., Broxterman, Q. B., Saviano, M. & Benedetti, E. (2003). Biopolymers, 68, 178–191. Web of Science CSD CrossRef PubMed CAS Google Scholar
Rigaku/MSC (2000). CrystalClear. Rigaku/MSC Inc., The Woodlands, Texas, USA. Google Scholar
Rigaku/MSC (2004). CrystalStructure. Rigaku/MSC Inc., The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of a study on the effect of the conformationally restricted molecular substitution on the crystal structures of biologically important class of compounds, we report herein the crystal structure of the title compound. Small and medium α-amino acids are generally highly flexible molecules that exist in solution in a dynamic equilibrium of interchanging conformations. As a consequence, most natural α-amino acids with physiological activity cannot be used for therapeutic purposes so we developed the introduction of conformational constrains. In comparison with native α-amino acids, side chain restricted analogues usually display more favorable pharmacological properties (Jiménez et al., 2000; Peggion et al., 2003).
The molecule of the title compound (Fig. 1) displays a Z configuration about the C2C3 double bond. The molecular conformation is enforced by an intramolecular C—H···N hydrogen bond (Table 1). The C19 and C20 methyl groups of the isopropyl group are disordered over two positions with occupancy factors of 0.5. The dihedral angle formed by the aromatic rings is 87.75 (12)°. In the crystal packing, centrosymmetrically related molecules are linked into dimers by intermolecular C—H···O hydrogen bonds. The dimers are further connected by N—H···O hydrogen bonds to form chains parallel to the a axis (Fig. 2).