organic compounds
Ethyl 2-isopropylamino-5-methyl-4-oxo-3-phenyl-3,4-dihydrothieno[2,3-d]pyrimidine-6-carboxylate
aInstitute of Medicinal Chemistry, Yunyang Medical College, Shiyan 442000, People's Republic of China, bDepartment of Pharmacy, Taihe Hospital of Yunyang Medical College, Shiyan 442000, People's Republic of China, cDepartment of Pharmacy, Renmin Hospital of Yunyang Medical College, Shiyan 442000, People's Republic of China, and dDepartment of Medicinal Physics, Yunyang Medical College, Shiyan 442000, People's Republic of China
*Correspondence e-mail: lyhuang6686@yahoo.com.cn
The title compound, C19H21N3O3S, was synthesized via an aza-Wittig reaction of a functionalized iminophosphorane with phenyl isocyanate under mild conditions. In the molecule, the fused thienopyrimidine ring system makes a dihedral angle of 66.30 (11)° with the phenyl ring. An intramolecular C—H⋯O hydrogen bond occurs. The terminal –OCH2CH3 group is disordered over two sites with refined occupancies of 0.537 (13) and 0.463 (13). The crystal packing is stabilized by intermolecular C—H⋯O and N—H⋯O hydrogen bonds.
Related literature
For the biological and pharmaceutical activity of pyrimidinone derivatives, see: Modica et al. (2004); Panico et al. (2001). For related structures, see: Zheng et al. (2007); Hu et al. (2007); Xu (2008); Xu et al. (2006).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2001); cell SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536809045449/bt5115sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809045449/bt5115Isup2.hkl
To a solution of diethyl 5-((phenylimino)methyleneamino)- 3-methylthiophene-2,4-dicarboxylate(3 mmol) in anhydrous dichloromethane (15 ml) was added iso-propan-1-amine (3 mmol). After stirring the reaction mixture for 1 h, the solvent was removed and anhydrous ethanol (10 ml) with several drops of EtONa in EtOH was added. The mixture was stirred for 5 h at room temperature. The solution was concentrated under reduced pressure and the residue was recrystallized from ethanol to give the title compound in a yield of 85%. Crystals suitable for single-crystal X-ray diffraction were obtained by recrystallization from a mixed solvent of ethanol and dichloromethane (1:1 v/v) at room temperature.
All H-atoms bonded to C were positioned geometrically and refined using a riding model with C—H = 0.93 Å, Uiso=1.2Ueq (C) for Csp2, C—H = 0.98 Å, Uiso = 1.2Ueq (C) for CH, C—H = 0.97 Å, Uiso = 1.2Ueq (C) for CH2, C—H = 0.96 Å, Uiso = 1.5Ueq (C) for CH3. The coordinates of the amino H atom were refined with Uiso = 1.2Ueq(N). The terminal O-CH2CH3 moiety is disordered over two sites with refined occupancies of 0.537 (13) and 0.463 (13). The C-C bonds were restrained to 1.54 (1)Å, the C-O bonds to 1.45 (1)° and the O···Cmethyl distances to 2.45 (2)Å.
Data collection: SMART (Bruker, 2001); cell
SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, showing the atom-labeling scheme. |
C19H21N3O3S | F(000) = 784 |
Mr = 371.45 | Dx = 1.319 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 4510 reflections |
a = 8.5995 (14) Å | θ = 2.6–26.5° |
b = 13.673 (2) Å | µ = 0.20 mm−1 |
c = 15.912 (3) Å | T = 298 K |
V = 1871.0 (5) Å3 | Block, colorless |
Z = 4 | 0.30 × 0.20 × 0.10 mm |
Bruker SMART 4K CCD area-detector diffractometer | 4636 independent reflections |
Radiation source: fine-focus sealed tube | 4149 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.061 |
ϕ and ω scans | θmax = 28.3°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −7→11 |
Tmin = 0.943, Tmax = 0.981 | k = −18→17 |
12706 measured reflections | l = −21→18 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.123 | w = 1/[σ2(Fo2) + (0.0601P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
4636 reflections | Δρmax = 0.33 e Å−3 |
271 parameters | Δρmin = −0.22 e Å−3 |
6 restraints | Absolute structure: Flack (1983), 1984 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.09 (8) |
C19H21N3O3S | V = 1871.0 (5) Å3 |
Mr = 371.45 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.5995 (14) Å | µ = 0.20 mm−1 |
b = 13.673 (2) Å | T = 298 K |
c = 15.912 (3) Å | 0.30 × 0.20 × 0.10 mm |
Bruker SMART 4K CCD area-detector diffractometer | 4636 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 4149 reflections with I > 2σ(I) |
Tmin = 0.943, Tmax = 0.981 | Rint = 0.061 |
12706 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.123 | Δρmax = 0.33 e Å−3 |
S = 1.10 | Δρmin = −0.22 e Å−3 |
4636 reflections | Absolute structure: Flack (1983), 1984 Friedel pairs |
271 parameters | Absolute structure parameter: 0.09 (8) |
6 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.2137 (2) | 0.27871 (14) | 0.47156 (12) | 0.0406 (4) | |
C2 | 0.2947 (3) | 0.21627 (15) | 0.41948 (14) | 0.0488 (5) | |
H2 | 0.3578 | 0.1675 | 0.4417 | 0.059* | |
C3 | 0.2800 (3) | 0.22783 (18) | 0.33286 (15) | 0.0606 (6) | |
H3 | 0.3351 | 0.1869 | 0.2969 | 0.073* | |
C4 | 0.1855 (4) | 0.2987 (2) | 0.30019 (16) | 0.0694 (8) | |
H4 | 0.1765 | 0.3056 | 0.2423 | 0.083* | |
C5 | 0.1040 (4) | 0.3595 (2) | 0.35261 (17) | 0.0716 (8) | |
H5 | 0.0385 | 0.4070 | 0.3303 | 0.086* | |
C6 | 0.1196 (3) | 0.35009 (17) | 0.43916 (15) | 0.0552 (6) | |
H6 | 0.0663 | 0.3921 | 0.4749 | 0.066* | |
C7 | 0.2851 (2) | 0.34531 (13) | 0.61047 (13) | 0.0395 (4) | |
C8 | 0.2038 (2) | 0.27158 (14) | 0.72863 (12) | 0.0408 (4) | |
C9 | 0.1490 (2) | 0.18802 (14) | 0.68884 (12) | 0.0376 (4) | |
C10 | 0.1562 (2) | 0.18457 (13) | 0.59891 (13) | 0.0391 (4) | |
C11 | 0.4070 (3) | 0.50790 (14) | 0.60896 (14) | 0.0464 (5) | |
H11 | 0.3291 | 0.5270 | 0.6508 | 0.056* | |
C12 | 0.4122 (4) | 0.5855 (2) | 0.5416 (2) | 0.0834 (10) | |
H12A | 0.4823 | 0.5656 | 0.4979 | 0.125* | |
H12B | 0.4476 | 0.6460 | 0.5655 | 0.125* | |
H12C | 0.3101 | 0.5944 | 0.5185 | 0.125* | |
C13 | 0.5612 (3) | 0.4960 (2) | 0.6528 (2) | 0.0693 (7) | |
H13A | 0.5529 | 0.4459 | 0.6948 | 0.104* | |
H13B | 0.5899 | 0.5566 | 0.6790 | 0.104* | |
H13C | 0.6392 | 0.4779 | 0.6125 | 0.104* | |
C14 | 0.0844 (2) | 0.11758 (14) | 0.74560 (13) | 0.0400 (4) | |
C15 | 0.0934 (2) | 0.14955 (14) | 0.82673 (14) | 0.0446 (5) | |
C16 | 0.0151 (3) | 0.02200 (17) | 0.71855 (17) | 0.0597 (6) | |
H16A | −0.0409 | −0.0065 | 0.7647 | 0.089* | |
H16B | 0.0966 | −0.0216 | 0.7012 | 0.089* | |
H16C | −0.0547 | 0.0328 | 0.6724 | 0.089* | |
C17 | 0.0542 (3) | 0.09639 (19) | 0.90376 (15) | 0.0544 (6) | |
C18' | 0.0196 (9) | 0.1295 (7) | 1.0546 (4) | 0.065 (2) | 0.463 (13) |
H18C | −0.0535 | 0.0755 | 1.0519 | 0.078* | 0.463 (13) |
H18D | −0.0262 | 0.1809 | 1.0885 | 0.078* | 0.463 (13) |
C19' | 0.1698 (11) | 0.0955 (10) | 1.0941 (7) | 0.099 (4) | 0.463 (13) |
H19D | 0.2073 | 0.0388 | 1.0648 | 0.148* | 0.463 (13) |
H19E | 0.1519 | 0.0792 | 1.1520 | 0.148* | 0.463 (13) |
H19F | 0.2457 | 0.1468 | 1.0907 | 0.148* | 0.463 (13) |
O3' | 0.0508 (11) | 0.1657 (6) | 0.9710 (4) | 0.0593 (17) | 0.463 (13) |
C18 | 0.0891 (12) | 0.0864 (5) | 1.0496 (3) | 0.070 (2) | 0.537 (13) |
H18A | 0.1427 | 0.0240 | 1.0484 | 0.084* | 0.537 (13) |
H18B | −0.0205 | 0.0748 | 1.0601 | 0.084* | 0.537 (13) |
C19 | 0.1567 (16) | 0.1515 (7) | 1.1163 (5) | 0.106 (3) | 0.537 (13) |
H19A | 0.2569 | 0.1746 | 1.0984 | 0.160* | 0.537 (13) |
H19B | 0.1676 | 0.1154 | 1.1676 | 0.160* | 0.537 (13) |
H19C | 0.0889 | 0.2063 | 1.1253 | 0.160* | 0.537 (13) |
O3 | 0.1105 (10) | 0.1383 (5) | 0.9708 (3) | 0.0599 (15) | 0.537 (13) |
N1 | 0.22489 (19) | 0.26857 (11) | 0.56226 (10) | 0.0390 (4) | |
N2 | 0.2725 (2) | 0.34924 (12) | 0.69284 (11) | 0.0414 (4) | |
N3 | 0.3553 (2) | 0.41720 (12) | 0.56877 (12) | 0.0464 (4) | |
H3A | 0.387 (3) | 0.4055 (18) | 0.5245 (18) | 0.056* | |
O1 | 0.1063 (2) | 0.11958 (11) | 0.55348 (10) | 0.0530 (4) | |
O2 | 0.0060 (2) | 0.01385 (13) | 0.90784 (12) | 0.0684 (5) | |
S1 | 0.17644 (7) | 0.26585 (4) | 0.83568 (3) | 0.05191 (16) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0506 (11) | 0.0394 (10) | 0.0320 (9) | −0.0100 (9) | 0.0019 (8) | −0.0027 (8) |
C2 | 0.0563 (12) | 0.0467 (10) | 0.0435 (11) | −0.0021 (9) | −0.0007 (9) | −0.0103 (9) |
C3 | 0.0789 (16) | 0.0605 (13) | 0.0425 (12) | −0.0130 (12) | 0.0112 (12) | −0.0177 (12) |
C4 | 0.102 (2) | 0.0714 (17) | 0.0345 (12) | −0.0149 (17) | −0.0017 (13) | 0.0018 (11) |
C5 | 0.099 (2) | 0.0705 (16) | 0.0456 (15) | 0.0111 (15) | −0.0045 (14) | 0.0150 (13) |
C6 | 0.0710 (15) | 0.0511 (12) | 0.0434 (13) | 0.0092 (11) | 0.0073 (11) | 0.0047 (10) |
C7 | 0.0475 (11) | 0.0334 (9) | 0.0375 (10) | −0.0033 (8) | 0.0027 (8) | −0.0061 (7) |
C8 | 0.0475 (11) | 0.0422 (10) | 0.0327 (9) | −0.0002 (9) | 0.0015 (8) | −0.0026 (8) |
C9 | 0.0428 (10) | 0.0340 (8) | 0.0359 (9) | −0.0008 (8) | −0.0028 (8) | 0.0014 (7) |
C10 | 0.0460 (10) | 0.0325 (8) | 0.0389 (10) | 0.0009 (8) | −0.0033 (8) | −0.0008 (7) |
C11 | 0.0578 (13) | 0.0343 (9) | 0.0472 (12) | −0.0073 (9) | 0.0111 (10) | −0.0077 (8) |
C12 | 0.122 (3) | 0.0458 (13) | 0.082 (2) | −0.0179 (16) | 0.0038 (19) | 0.0125 (14) |
C13 | 0.0615 (15) | 0.0708 (16) | 0.0756 (19) | −0.0120 (13) | −0.0005 (14) | −0.0171 (15) |
C14 | 0.0424 (10) | 0.0358 (9) | 0.0418 (11) | 0.0007 (8) | 0.0007 (8) | 0.0052 (8) |
C15 | 0.0475 (11) | 0.0414 (10) | 0.0449 (12) | −0.0033 (8) | −0.0007 (9) | 0.0060 (9) |
C16 | 0.0805 (17) | 0.0412 (12) | 0.0573 (15) | −0.0124 (11) | 0.0060 (13) | 0.0022 (11) |
C17 | 0.0591 (14) | 0.0637 (14) | 0.0403 (12) | −0.0082 (11) | −0.0004 (10) | 0.0081 (11) |
C18' | 0.082 (5) | 0.059 (4) | 0.053 (4) | 0.003 (3) | 0.020 (3) | 0.003 (3) |
C19' | 0.099 (6) | 0.128 (10) | 0.070 (7) | 0.009 (7) | −0.001 (5) | 0.028 (7) |
O3' | 0.083 (5) | 0.055 (4) | 0.040 (2) | −0.004 (3) | 0.006 (3) | 0.007 (2) |
C18 | 0.107 (6) | 0.071 (4) | 0.032 (3) | −0.005 (4) | −0.004 (3) | 0.013 (3) |
C19 | 0.193 (10) | 0.073 (5) | 0.054 (4) | −0.001 (5) | −0.024 (5) | 0.003 (3) |
O3 | 0.090 (4) | 0.050 (3) | 0.0398 (19) | 0.000 (2) | −0.002 (2) | 0.0111 (18) |
N1 | 0.0515 (9) | 0.0339 (7) | 0.0315 (8) | −0.0024 (7) | 0.0007 (7) | −0.0029 (7) |
N2 | 0.0549 (10) | 0.0348 (8) | 0.0345 (9) | −0.0057 (7) | 0.0030 (7) | −0.0040 (7) |
N3 | 0.0623 (11) | 0.0403 (8) | 0.0365 (9) | −0.0117 (8) | 0.0130 (8) | −0.0084 (7) |
O1 | 0.0762 (11) | 0.0409 (7) | 0.0420 (9) | −0.0149 (7) | −0.0053 (8) | −0.0033 (6) |
O2 | 0.0874 (13) | 0.0600 (10) | 0.0578 (11) | −0.0188 (10) | 0.0060 (10) | 0.0144 (9) |
S1 | 0.0734 (4) | 0.0499 (3) | 0.0324 (2) | −0.0140 (3) | 0.0024 (2) | −0.0019 (2) |
C1—C6 | 1.369 (3) | C13—H13A | 0.9600 |
C1—C2 | 1.379 (3) | C13—H13B | 0.9600 |
C1—N1 | 1.453 (2) | C13—H13C | 0.9600 |
C2—C3 | 1.393 (3) | C14—C15 | 1.365 (3) |
C2—H2 | 0.9300 | C14—C16 | 1.499 (3) |
C3—C4 | 1.367 (4) | C15—C17 | 1.464 (3) |
C3—H3 | 0.9300 | C15—S1 | 1.749 (2) |
C4—C5 | 1.371 (4) | C16—H16A | 0.9600 |
C4—H4 | 0.9300 | C16—H16B | 0.9600 |
C5—C6 | 1.390 (3) | C16—H16C | 0.9600 |
C5—H5 | 0.9300 | C17—O2 | 1.204 (3) |
C6—H6 | 0.9300 | C17—O3 | 1.303 (7) |
C7—N2 | 1.316 (3) | C17—O3' | 1.429 (8) |
C7—N3 | 1.331 (3) | C18'—O3' | 1.445 (7) |
C7—N1 | 1.399 (2) | C18'—C19' | 1.510 (8) |
C8—N2 | 1.342 (2) | C18'—H18C | 0.9700 |
C8—C9 | 1.389 (3) | C18'—H18D | 0.9700 |
C8—S1 | 1.721 (2) | C19'—H19D | 0.9600 |
C9—C14 | 1.433 (3) | C19'—H19E | 0.9600 |
C9—C10 | 1.433 (3) | C19'—H19F | 0.9600 |
C10—O1 | 1.223 (2) | C18—O3 | 1.453 (6) |
C10—N1 | 1.417 (2) | C18—C19 | 1.502 (7) |
C11—N3 | 1.464 (3) | C18—H18A | 0.9700 |
C11—C13 | 1.508 (4) | C18—H18B | 0.9700 |
C11—C12 | 1.509 (4) | C19—H19A | 0.9600 |
C11—H11 | 0.9800 | C19—H19B | 0.9600 |
C12—H12A | 0.9600 | C19—H19C | 0.9600 |
C12—H12B | 0.9600 | N3—H3A | 0.77 (3) |
C12—H12C | 0.9600 | ||
C6—C1—C2 | 120.9 (2) | H13B—C13—H13C | 109.5 |
C6—C1—N1 | 118.77 (19) | C15—C14—C9 | 111.03 (18) |
C2—C1—N1 | 120.30 (19) | C15—C14—C16 | 125.0 (2) |
C1—C2—C3 | 118.6 (2) | C9—C14—C16 | 123.99 (19) |
C1—C2—H2 | 120.7 | C14—C15—C17 | 128.3 (2) |
C3—C2—H2 | 120.7 | C14—C15—S1 | 113.04 (16) |
C4—C3—C2 | 120.7 (2) | C17—C15—S1 | 118.50 (17) |
C4—C3—H3 | 119.7 | C14—C16—H16A | 109.5 |
C2—C3—H3 | 119.7 | C14—C16—H16B | 109.5 |
C3—C4—C5 | 120.2 (2) | H16A—C16—H16B | 109.5 |
C3—C4—H4 | 119.9 | C14—C16—H16C | 109.5 |
C5—C4—H4 | 119.9 | H16A—C16—H16C | 109.5 |
C4—C5—C6 | 119.8 (2) | H16B—C16—H16C | 109.5 |
C4—C5—H5 | 120.1 | O2—C17—O3 | 119.7 (3) |
C6—C5—H5 | 120.1 | O2—C17—O3' | 125.0 (3) |
C1—C6—C5 | 119.8 (2) | O3—C17—O3' | 26.4 (3) |
C1—C6—H6 | 120.1 | O2—C17—C15 | 126.1 (2) |
C5—C6—H6 | 120.1 | O3—C17—C15 | 112.4 (3) |
N2—C7—N3 | 120.23 (18) | O3'—C17—C15 | 107.6 (3) |
N2—C7—N1 | 123.12 (18) | O3'—C18'—C19' | 109.3 (6) |
N3—C7—N1 | 116.64 (17) | O3'—C18'—H18C | 109.8 |
N2—C8—C9 | 127.35 (18) | C19'—C18'—H18C | 109.8 |
N2—C8—S1 | 121.07 (14) | O3'—C18'—H18D | 109.8 |
C9—C8—S1 | 111.57 (14) | C19'—C18'—H18D | 109.8 |
C8—C9—C14 | 113.40 (18) | H18C—C18'—H18D | 108.3 |
C8—C9—C10 | 117.90 (18) | C17—O3'—C18' | 117.8 (5) |
C14—C9—C10 | 128.62 (19) | O3—C18—C19 | 105.8 (5) |
O1—C10—N1 | 119.46 (18) | O3—C18—H18A | 110.6 |
O1—C10—C9 | 126.79 (19) | C19—C18—H18A | 110.6 |
N1—C10—C9 | 113.72 (17) | O3—C18—H18B | 110.6 |
N3—C11—C13 | 112.19 (19) | C19—C18—H18B | 110.6 |
N3—C11—C12 | 107.1 (2) | H18A—C18—H18B | 108.7 |
C13—C11—C12 | 112.2 (2) | C18—C19—H19A | 109.5 |
N3—C11—H11 | 108.4 | C18—C19—H19B | 109.5 |
C13—C11—H11 | 108.4 | H19A—C19—H19B | 109.5 |
C12—C11—H11 | 108.4 | C18—C19—H19C | 109.5 |
C11—C12—H12A | 109.5 | H19A—C19—H19C | 109.5 |
C11—C12—H12B | 109.5 | H19B—C19—H19C | 109.5 |
H12A—C12—H12B | 109.5 | C17—O3—C18 | 116.4 (5) |
C11—C12—H12C | 109.5 | C7—N1—C10 | 122.44 (16) |
H12A—C12—H12C | 109.5 | C7—N1—C1 | 119.84 (16) |
H12B—C12—H12C | 109.5 | C10—N1—C1 | 117.29 (15) |
C11—C13—H13A | 109.5 | C7—N2—C8 | 115.24 (17) |
C11—C13—H13B | 109.5 | C7—N3—C11 | 123.06 (18) |
H13A—C13—H13B | 109.5 | C7—N3—H3A | 117.6 (19) |
C11—C13—H13C | 109.5 | C11—N3—H3A | 117.7 (19) |
H13A—C13—H13C | 109.5 | C8—S1—C15 | 90.95 (10) |
C6—C1—C2—C3 | 0.6 (3) | O3—C17—O3'—C18' | −72.8 (10) |
N1—C1—C2—C3 | 179.51 (18) | C15—C17—O3'—C18' | −177.9 (5) |
C1—C2—C3—C4 | −1.0 (4) | C19'—C18'—O3'—C17 | 85.6 (13) |
C2—C3—C4—C5 | 0.1 (4) | O2—C17—O3—C18 | −9.1 (7) |
C3—C4—C5—C6 | 1.0 (5) | O3'—C17—O3—C18 | 100.6 (13) |
C2—C1—C6—C5 | 0.5 (4) | C15—C17—O3—C18 | −174.9 (5) |
N1—C1—C6—C5 | −178.4 (2) | C19—C18—O3—C17 | −177.4 (12) |
C4—C5—C6—C1 | −1.4 (4) | N2—C7—N1—C10 | −5.2 (3) |
N2—C8—C9—C14 | 178.76 (19) | N3—C7—N1—C10 | 175.90 (18) |
S1—C8—C9—C14 | −0.3 (2) | N2—C7—N1—C1 | 167.00 (19) |
N2—C8—C9—C10 | −4.3 (3) | N3—C7—N1—C1 | −11.9 (3) |
S1—C8—C9—C10 | 176.67 (15) | O1—C10—N1—C7 | −179.60 (19) |
C8—C9—C10—O1 | −176.0 (2) | C9—C10—N1—C7 | 2.4 (3) |
C14—C9—C10—O1 | 0.5 (4) | O1—C10—N1—C1 | 8.0 (3) |
C8—C9—C10—N1 | 1.9 (3) | C9—C10—N1—C1 | −170.04 (17) |
C14—C9—C10—N1 | 178.34 (18) | C6—C1—N1—C7 | −62.7 (3) |
C8—C9—C14—C15 | −0.6 (3) | C2—C1—N1—C7 | 118.4 (2) |
C10—C9—C14—C15 | −177.1 (2) | C6—C1—N1—C10 | 109.9 (2) |
C8—C9—C14—C16 | 179.0 (2) | C2—C1—N1—C10 | −69.0 (3) |
C10—C9—C14—C16 | 2.4 (4) | N3—C7—N2—C8 | −178.13 (19) |
C9—C14—C15—C17 | −173.8 (2) | N1—C7—N2—C8 | 3.0 (3) |
C16—C14—C15—C17 | 6.7 (4) | C9—C8—N2—C7 | 1.7 (3) |
C9—C14—C15—S1 | 1.2 (2) | S1—C8—N2—C7 | −179.30 (16) |
C16—C14—C15—S1 | −178.38 (19) | N2—C7—N3—C11 | −6.7 (3) |
C14—C15—C17—O2 | −0.3 (4) | N1—C7—N3—C11 | 172.24 (19) |
S1—C15—C17—O2 | −175.0 (2) | C13—C11—N3—C7 | 81.3 (3) |
C14—C15—C17—O3 | 164.5 (5) | C12—C11—N3—C7 | −155.1 (2) |
S1—C15—C17—O3 | −10.3 (5) | N2—C8—S1—C15 | −178.33 (18) |
C14—C15—C17—O3' | −167.9 (5) | C9—C8—S1—C15 | 0.79 (16) |
S1—C15—C17—O3' | 17.4 (5) | C14—C15—S1—C8 | −1.14 (17) |
O2—C17—O3'—C18' | 14.3 (9) | C17—C15—S1—C8 | 174.36 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16A···O2 | 0.96 | 2.33 | 3.015 (3) | 128 |
C6—H6···O2i | 0.93 | 2.58 | 3.479 (3) | 164 |
N3—H3A···O1ii | 0.77 (3) | 2.28 (3) | 2.949 (2) | 145 (2) |
Symmetry codes: (i) −x, y+1/2, −z+3/2; (ii) x+1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C19H21N3O3S |
Mr | 371.45 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 298 |
a, b, c (Å) | 8.5995 (14), 13.673 (2), 15.912 (3) |
V (Å3) | 1871.0 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.20 |
Crystal size (mm) | 0.30 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART 4K CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.943, 0.981 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12706, 4636, 4149 |
Rint | 0.061 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.123, 1.10 |
No. of reflections | 4636 |
No. of parameters | 271 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.22 |
Absolute structure | Flack (1983), 1984 Friedel pairs |
Absolute structure parameter | 0.09 (8) |
Computer programs: SMART (Bruker, 2001), SAINT-Plus (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16A···O2 | 0.96 | 2.33 | 3.015 (3) | 127.7 |
C6—H6···O2i | 0.93 | 2.58 | 3.479 (3) | 164.1 |
N3—H3A···O1ii | 0.77 (3) | 2.28 (3) | 2.949 (2) | 145 (2) |
Symmetry codes: (i) −x, y+1/2, −z+3/2; (ii) x+1/2, −y+1/2, −z+1. |
Acknowledgements
We gratefully acknowledge financial support of this work by the Key Science Research Project of Hubei Provincial Department of Education (No. D20092406).
References
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Derivatives of pyrimidinone are attracting increasing attention in the synthetic chemistry community because of the important role played by such systems in many natural products, also in antibiotics and drugs (Modica et al., 2004; Panico et al., 2001). Recently, we have been interested in the synthesis of new thieno[3,2-d]pyrimidone derivatives. Some related X-ray crystal structure reports for pyrimidinone derivatives have been published (Zheng et al., 2007; Hu et al. 2007; Xu et al., 2006, 2008). Here, the structure of the title compound, which may be used as a new precursor for obtaining bioactive molecules, is reported (Fig. 1). In the molecule, the bond lengths and angles are unexceptional. The thienopyrimidinone rings are closer to coplanarity with maximum deviations 0.074 (2)Å for N3. The phenyl ring is twisted with respect to the pyrimidinone ring, with a dihedral angle of 66.30 (11)°. C18, C19 and attached hydrogen and O3 atoms are disordered over two sites, with refined occupancies of 0.537 (13) and 0.463 (13). Intramolecular C—H···O and intermolecular C—H···O, N—H···O hydrogen bonds interactions are present, which stabilize the conformation of the molecule and the crystal structure (Table 1).