organic compounds
(Z)-Amino(2-methyl-3-oxoisoindolin-1-ylidene)acetonitrile
aInstitut für Organische Chemie, Universität Mainz, Duesbergweg 10-14, 55128 Mainz, Germany, and bDepartment Chemie, Universität Hamburg, Martin-Luther-King-Platz 6, 20146 Hamburg, Germany
*Correspondence e-mail: opatz@chemie.uni-hamburg.de
The 11H9N3O, contains two independent and nearly identical molecules (A and B). Molecule A can be transformed to B using a rotation of approximately 85° around the [111] direction. Each A molecule is connected to three B molecules via N—H⋯N and N—H⋯O hydrogen bonds and vice versa. Centrosymmetrically related molecules of the same residue form π–π interactions with centroid–centroid distances of 4.326 (1) and 3.826 (1) Å for the benzene rings of molecules A and B, respectively.
of the title compound, CRelated literature
For the preparation of the compound as well as the ). For the of the distantly related compound N-(2-amino-1,2-dicyanovinyl)acetamide, see: Al-Azmi et al., (2001).
of the corresponding 2-benzyl derivative, see: Opatz & Ferenc (2004Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
10.1107/S1600536809045681/bt5125sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809045681/bt5125Isup2.hkl
The preparation was carried out as described in the procedure reported by Opatz and Ferenc (2004). The (Z)-isomer was obtained by recrystallization of the isomeric mixture from hexanes/ethyl acetate. Single crystals suitable for X-ray crystallography were grown by evaporation from a CH2Cl2 solution.
Hydrogen atoms attached to carbons were placed at calculated positions with C—H = 0.95 Å (aromatic) or 0.98–0.99 Å (sp3 C-atom). Hydrogen atoms attached to N were located in difference Fourier maps. All H atoms were refined in the riding-model approximation with isotropic displacement parameters (set at 1.2–1.5 times of the Ueq of the parent atom). The crystal used for data collection was twinned. Using the twin matrix 0 - 1 0, -1 0 0, 0 0 - 1 with BSAF 0.468 (1) the structure
was succesful.Data collection: APEX2 (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. View of compound I. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Part of the packing diagram. Hydrogen bonds with dashed lines. |
C11H9N3O | Z = 4 |
Mr = 199.21 | F(000) = 416 |
Triclinic, P1 | Dx = 1.429 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.5021 (7) Å | Cell parameters from 5592 reflections |
b = 8.5080 (6) Å | θ = 2.5–27.8° |
c = 14.0412 (11) Å | µ = 0.10 mm−1 |
α = 80.741 (5)° | T = 298 K |
β = 80.797 (5)° | Block, yellow |
γ = 68.329 (4)° | 0.44 × 0.30 × 0.24 mm |
V = 925.98 (12) Å3 |
Bruker SMART APEXII diffractometer | 3668 reflections with I > 2σ(I) |
Radiation source: sealed tube | Rint = 0.095 |
Graphite monochromator | θmax = 28.4°, θmin = 2.6° |
CCD scan | h = −11→11 |
13710 measured reflections | k = −11→11 |
4570 independent reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.114 | H-atom parameters constrained |
S = 0.97 | w = 1/[σ2(Fo2) + (0.0637P)2] where P = (Fo2 + 2Fc2)/3 |
4570 reflections | (Δ/σ)max = 0.001 |
274 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
C11H9N3O | γ = 68.329 (4)° |
Mr = 199.21 | V = 925.98 (12) Å3 |
Triclinic, P1 | Z = 4 |
a = 8.5021 (7) Å | Mo Kα radiation |
b = 8.5080 (6) Å | µ = 0.10 mm−1 |
c = 14.0412 (11) Å | T = 298 K |
α = 80.741 (5)° | 0.44 × 0.30 × 0.24 mm |
β = 80.797 (5)° |
Bruker SMART APEXII diffractometer | 3668 reflections with I > 2σ(I) |
13710 measured reflections | Rint = 0.095 |
4570 independent reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.114 | H-atom parameters constrained |
S = 0.97 | Δρmax = 0.24 e Å−3 |
4570 reflections | Δρmin = −0.29 e Å−3 |
274 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1A | 0.2396 (3) | 0.2747 (2) | 0.03598 (13) | 0.0253 (4) | |
C2A | 0.0717 (3) | 0.2796 (3) | 0.05168 (15) | 0.0336 (5) | |
H2A | 0.0273 | 0.2403 | 0.0079 | 0.040* | |
C3A | −0.0270 (3) | 0.3451 (3) | 0.13471 (15) | 0.0383 (5) | |
H3A | −0.1390 | 0.3487 | 0.1464 | 0.046* | |
C4A | 0.0353 (3) | 0.4049 (3) | 0.20035 (15) | 0.0368 (5) | |
H4A | −0.0345 | 0.4474 | 0.2554 | 0.044* | |
C5A | 0.2019 (3) | 0.4024 (2) | 0.18496 (14) | 0.0331 (4) | |
H5A | 0.2454 | 0.4423 | 0.2289 | 0.040* | |
C6A | 0.3004 (3) | 0.3385 (2) | 0.10205 (13) | 0.0269 (4) | |
C7A | 0.4779 (3) | 0.3235 (2) | 0.06796 (13) | 0.0270 (4) | |
N8A | 0.5196 (2) | 0.2477 (2) | −0.01665 (11) | 0.0260 (3) | |
C9A | 0.3809 (2) | 0.2157 (2) | −0.04199 (13) | 0.0244 (4) | |
O10A | 0.5747 (2) | 0.36850 (19) | 0.10405 (10) | 0.0367 (3) | |
C11A | 0.6877 (3) | 0.2169 (3) | −0.07052 (14) | 0.0334 (5) | |
H11A | 0.7539 | 0.2569 | −0.0375 | 0.050* | |
H11B | 0.6761 | 0.2765 | −0.1346 | 0.050* | |
H11C | 0.7439 | 0.0971 | −0.0749 | 0.050* | |
C12A | 0.3794 (3) | 0.1446 (2) | −0.12086 (13) | 0.0274 (4) | |
N13A | 0.5046 (2) | 0.1033 (2) | −0.19937 (12) | 0.0378 (4) | |
H13A | 0.4929 | 0.0314 | −0.2428 | 0.057* | |
H13B | 0.6248 | 0.0872 | −0.1858 | 0.057* | |
C14A | 0.2264 (3) | 0.1156 (3) | −0.13240 (14) | 0.0333 (5) | |
N15A | 0.1094 (3) | 0.0862 (3) | −0.14296 (14) | 0.0497 (5) | |
C1B | 0.2361 (2) | 0.7692 (2) | 0.48593 (13) | 0.0255 (4) | |
C2B | 0.2327 (3) | 0.9368 (2) | 0.46907 (14) | 0.0315 (5) | |
H2B | 0.2776 | 0.9793 | 0.5111 | 0.038* | |
C3B | 0.1607 (3) | 1.0388 (3) | 0.38784 (15) | 0.0365 (5) | |
H3B | 0.1575 | 1.1506 | 0.3760 | 0.044* | |
C4B | 0.0932 (3) | 0.9777 (3) | 0.32407 (15) | 0.0364 (5) | |
H4B | 0.0454 | 1.0487 | 0.2706 | 0.044* | |
C5B | 0.0971 (3) | 0.8124 (3) | 0.33976 (14) | 0.0340 (5) | |
H5B | 0.0527 | 0.7702 | 0.2975 | 0.041* | |
C6B | 0.1689 (3) | 0.7110 (2) | 0.42024 (13) | 0.0273 (4) | |
C7B | 0.1883 (3) | 0.5323 (2) | 0.45288 (13) | 0.0285 (4) | |
N8B | 0.2650 (2) | 0.49057 (19) | 0.53725 (11) | 0.0283 (4) | |
C9B | 0.2977 (2) | 0.6286 (2) | 0.56289 (13) | 0.0257 (4) | |
O10B | 0.1472 (2) | 0.43614 (19) | 0.41427 (10) | 0.0382 (4) | |
C11B | 0.2984 (3) | 0.3212 (2) | 0.58994 (15) | 0.0356 (5) | |
H11D | 0.2602 | 0.2548 | 0.5561 | 0.053* | |
H11E | 0.2386 | 0.3306 | 0.6540 | 0.053* | |
H11F | 0.4184 | 0.2667 | 0.5944 | 0.053* | |
C12B | 0.3717 (3) | 0.6276 (2) | 0.64150 (14) | 0.0285 (4) | |
N13B | 0.4376 (3) | 0.4959 (2) | 0.71336 (13) | 0.0409 (4) | |
H13C | 0.4549 | 0.5204 | 0.7730 | 0.061* | |
H13D | 0.4177 | 0.3943 | 0.7053 | 0.061* | |
C14B | 0.3965 (3) | 0.7805 (3) | 0.65574 (14) | 0.0334 (4) | |
N15B | 0.4204 (3) | 0.8972 (3) | 0.67200 (14) | 0.0483 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1A | 0.0268 (10) | 0.0205 (9) | 0.0297 (9) | −0.0101 (8) | −0.0021 (7) | −0.0029 (7) |
C2A | 0.0313 (12) | 0.0356 (11) | 0.0376 (10) | −0.0165 (10) | −0.0019 (9) | −0.0049 (9) |
C3A | 0.0289 (12) | 0.0403 (12) | 0.0448 (12) | −0.0153 (9) | 0.0048 (9) | −0.0037 (9) |
C4A | 0.0401 (12) | 0.0329 (11) | 0.0346 (10) | −0.0133 (9) | 0.0080 (9) | −0.0067 (9) |
C5A | 0.0417 (13) | 0.0291 (10) | 0.0306 (10) | −0.0159 (9) | 0.0012 (9) | −0.0059 (8) |
C6A | 0.0340 (11) | 0.0199 (9) | 0.0292 (9) | −0.0135 (8) | −0.0020 (8) | −0.0011 (7) |
C7A | 0.0326 (10) | 0.0240 (9) | 0.0273 (9) | −0.0128 (8) | −0.0046 (8) | −0.0026 (7) |
N8A | 0.0269 (9) | 0.0262 (8) | 0.0288 (7) | −0.0139 (7) | −0.0008 (6) | −0.0047 (6) |
C9A | 0.0278 (10) | 0.0203 (9) | 0.0276 (9) | −0.0120 (8) | −0.0032 (7) | −0.0006 (7) |
O10A | 0.0405 (9) | 0.0431 (8) | 0.0372 (7) | −0.0240 (7) | −0.0049 (6) | −0.0111 (6) |
C11A | 0.0295 (11) | 0.0376 (11) | 0.0373 (11) | −0.0169 (9) | 0.0020 (8) | −0.0095 (9) |
C12A | 0.0324 (11) | 0.0239 (9) | 0.0281 (9) | −0.0127 (8) | −0.0047 (8) | −0.0011 (7) |
N13A | 0.0425 (11) | 0.0443 (11) | 0.0347 (9) | −0.0227 (9) | 0.0054 (8) | −0.0183 (8) |
C14A | 0.0397 (12) | 0.0357 (11) | 0.0288 (9) | −0.0171 (10) | −0.0050 (8) | −0.0054 (8) |
N15A | 0.0510 (13) | 0.0666 (14) | 0.0468 (11) | −0.0343 (11) | −0.0064 (9) | −0.0153 (10) |
C1B | 0.0258 (10) | 0.0236 (9) | 0.0286 (9) | −0.0122 (8) | 0.0058 (7) | −0.0078 (7) |
C2B | 0.0379 (12) | 0.0260 (10) | 0.0358 (10) | −0.0179 (9) | 0.0021 (9) | −0.0082 (8) |
C3B | 0.0420 (12) | 0.0244 (10) | 0.0425 (11) | −0.0148 (9) | 0.0040 (9) | −0.0034 (8) |
C4B | 0.0419 (13) | 0.0308 (11) | 0.0345 (10) | −0.0130 (10) | −0.0013 (9) | 0.0001 (8) |
C5B | 0.0379 (12) | 0.0370 (11) | 0.0313 (10) | −0.0183 (10) | 0.0010 (8) | −0.0079 (8) |
C6B | 0.0316 (11) | 0.0269 (9) | 0.0265 (9) | −0.0153 (8) | 0.0052 (7) | −0.0083 (7) |
C7B | 0.0337 (11) | 0.0263 (10) | 0.0296 (9) | −0.0159 (8) | 0.0056 (8) | −0.0111 (7) |
N8B | 0.0372 (10) | 0.0213 (8) | 0.0313 (8) | −0.0159 (7) | 0.0017 (7) | −0.0081 (6) |
C9B | 0.0273 (10) | 0.0208 (9) | 0.0317 (9) | −0.0118 (8) | 0.0038 (7) | −0.0098 (7) |
O10B | 0.0548 (10) | 0.0354 (8) | 0.0357 (7) | −0.0260 (8) | −0.0021 (6) | −0.0137 (6) |
C11B | 0.0492 (13) | 0.0227 (10) | 0.0393 (10) | −0.0184 (9) | −0.0031 (9) | −0.0038 (8) |
C12B | 0.0296 (10) | 0.0250 (10) | 0.0332 (10) | −0.0123 (8) | 0.0029 (8) | −0.0095 (7) |
N13B | 0.0592 (13) | 0.0316 (10) | 0.0369 (9) | −0.0181 (9) | −0.0131 (9) | −0.0052 (8) |
C14B | 0.0392 (12) | 0.0346 (11) | 0.0320 (10) | −0.0171 (9) | −0.0033 (8) | −0.0100 (8) |
N15B | 0.0668 (14) | 0.0387 (11) | 0.0526 (11) | −0.0287 (10) | −0.0115 (10) | −0.0127 (9) |
C1A—C2A | 1.395 (3) | C1B—C6B | 1.395 (3) |
C1A—C6A | 1.395 (3) | C1B—C2B | 1.398 (3) |
C1A—C9A | 1.485 (2) | C1B—C9B | 1.475 (3) |
C2A—C3A | 1.387 (3) | C2B—C3B | 1.393 (3) |
C2A—H2A | 0.9300 | C2B—H2B | 0.9300 |
C3A—C4A | 1.377 (3) | C3B—C4B | 1.391 (3) |
C3A—H3A | 0.9300 | C3B—H3B | 0.9300 |
C4A—C5A | 1.391 (3) | C4B—C5B | 1.377 (3) |
C4A—H4A | 0.9300 | C4B—H4B | 0.9300 |
C5A—C6A | 1.381 (3) | C5B—C6B | 1.383 (3) |
C5A—H5A | 0.9300 | C5B—H5B | 0.9300 |
C6A—C7A | 1.473 (3) | C6B—C7B | 1.471 (3) |
C7A—O10A | 1.228 (2) | C7B—O10B | 1.225 (2) |
C7A—N8A | 1.377 (2) | C7B—N8B | 1.377 (3) |
N8A—C9A | 1.412 (2) | N8B—C9B | 1.412 (2) |
N8A—C11A | 1.458 (2) | N8B—C11B | 1.458 (2) |
C9A—C12A | 1.348 (3) | C9B—C12B | 1.352 (3) |
C11A—H11A | 0.9600 | C11B—H11D | 0.9600 |
C11A—H11B | 0.9600 | C11B—H11E | 0.9600 |
C11A—H11C | 0.9600 | C11B—H11F | 0.9600 |
C12A—N13A | 1.395 (2) | C12B—N13B | 1.393 (3) |
C12A—C14A | 1.447 (3) | C12B—C14B | 1.441 (2) |
N13A—H13A | 0.9688 | N13B—H13C | 0.9399 |
N13A—H13B | 1.0251 | N13B—H13D | 0.9669 |
C14A—N15A | 1.148 (3) | C14B—N15B | 1.147 (3) |
C2A—C1A—C6A | 119.47 (17) | C6B—C1B—C2B | 118.63 (19) |
C2A—C1A—C9A | 133.57 (17) | C6B—C1B—C9B | 107.85 (15) |
C6A—C1A—C9A | 106.95 (16) | C2B—C1B—C9B | 133.53 (18) |
C3A—C2A—C1A | 117.81 (19) | C3B—C2B—C1B | 118.40 (18) |
C3A—C2A—H2A | 121.1 | C3B—C2B—H2B | 120.8 |
C1A—C2A—H2A | 121.1 | C1B—C2B—H2B | 120.8 |
C4A—C3A—C2A | 122.2 (2) | C4B—C3B—C2B | 121.68 (18) |
C4A—C3A—H3A | 118.9 | C4B—C3B—H3B | 119.2 |
C2A—C3A—H3A | 118.9 | C2B—C3B—H3B | 119.2 |
C3A—C4A—C5A | 120.48 (19) | C5B—C4B—C3B | 120.3 (2) |
C3A—C4A—H4A | 119.8 | C5B—C4B—H4B | 119.9 |
C5A—C4A—H4A | 119.8 | C3B—C4B—H4B | 119.9 |
C6A—C5A—C4A | 117.56 (19) | C4B—C5B—C6B | 118.06 (19) |
C6A—C5A—H5A | 121.2 | C4B—C5B—H5B | 121.0 |
C4A—C5A—H5A | 121.2 | C6B—C5B—H5B | 121.0 |
C5A—C6A—C1A | 122.42 (18) | C5B—C6B—C1B | 122.93 (17) |
C5A—C6A—C7A | 128.57 (17) | C5B—C6B—C7B | 128.61 (17) |
C1A—C6A—C7A | 109.01 (16) | C1B—C6B—C7B | 108.46 (17) |
O10A—C7A—N8A | 124.46 (18) | O10B—C7B—N8B | 125.50 (18) |
O10A—C7A—C6A | 129.24 (18) | O10B—C7B—C6B | 128.30 (19) |
N8A—C7A—C6A | 106.30 (15) | N8B—C7B—C6B | 106.20 (14) |
C7A—N8A—C9A | 111.70 (15) | C7B—N8B—C9B | 112.07 (15) |
C7A—N8A—C11A | 120.31 (15) | C7B—N8B—C11B | 119.95 (14) |
C9A—N8A—C11A | 127.93 (15) | C9B—N8B—C11B | 127.95 (16) |
C12A—C9A—N8A | 126.48 (17) | C12B—C9B—N8B | 126.16 (17) |
C12A—C9A—C1A | 127.51 (17) | C12B—C9B—C1B | 128.42 (16) |
N8A—C9A—C1A | 106.01 (14) | N8B—C9B—C1B | 105.42 (15) |
N8A—C11A—H11A | 109.5 | N8B—C11B—H11D | 109.5 |
N8A—C11A—H11B | 109.5 | N8B—C11B—H11E | 109.5 |
H11A—C11A—H11B | 109.5 | H11D—C11B—H11E | 109.5 |
N8A—C11A—H11C | 109.5 | N8B—C11B—H11F | 109.5 |
H11A—C11A—H11C | 109.5 | H11D—C11B—H11F | 109.5 |
H11B—C11A—H11C | 109.5 | H11E—C11B—H11F | 109.5 |
C9A—C12A—N13A | 128.35 (17) | C9B—C12B—N13B | 130.12 (17) |
C9A—C12A—C14A | 118.38 (17) | C9B—C12B—C14B | 118.57 (18) |
N13A—C12A—C14A | 113.12 (16) | N13B—C12B—C14B | 111.26 (17) |
C12A—N13A—H13A | 116.8 | C12B—N13B—H13C | 120.2 |
C12A—N13A—H13B | 115.0 | C12B—N13B—H13D | 111.4 |
H13A—N13A—H13B | 118.1 | H13C—N13B—H13D | 123.8 |
N15A—C14A—C12A | 177.1 (2) | N15B—C14B—C12B | 175.9 (2) |
C6A—C1A—C2A—C3A | −1.5 (3) | C6B—C1B—C2B—C3B | 0.7 (3) |
C9A—C1A—C2A—C3A | −179.98 (19) | C9B—C1B—C2B—C3B | −178.89 (19) |
C1A—C2A—C3A—C4A | 0.4 (3) | C1B—C2B—C3B—C4B | −0.1 (3) |
C2A—C3A—C4A—C5A | 0.3 (3) | C2B—C3B—C4B—C5B | −0.3 (3) |
C3A—C4A—C5A—C6A | 0.1 (3) | C3B—C4B—C5B—C6B | 0.2 (3) |
C4A—C5A—C6A—C1A | −1.3 (3) | C4B—C5B—C6B—C1B | 0.4 (3) |
C4A—C5A—C6A—C7A | 179.10 (18) | C4B—C5B—C6B—C7B | 179.96 (19) |
C2A—C1A—C6A—C5A | 2.1 (3) | C2B—C1B—C6B—C5B | −0.9 (3) |
C9A—C1A—C6A—C5A | −179.10 (16) | C9B—C1B—C6B—C5B | 178.83 (17) |
C2A—C1A—C6A—C7A | −178.31 (16) | C2B—C1B—C6B—C7B | 179.50 (16) |
C9A—C1A—C6A—C7A | 0.5 (2) | C9B—C1B—C6B—C7B | −0.8 (2) |
C5A—C6A—C7A—O10A | −2.3 (3) | C5B—C6B—C7B—O10B | 1.3 (3) |
C1A—C6A—C7A—O10A | 178.13 (19) | C1B—C6B—C7B—O10B | −179.04 (19) |
C5A—C6A—C7A—N8A | 178.35 (18) | C5B—C6B—C7B—N8B | −179.13 (19) |
C1A—C6A—C7A—N8A | −1.3 (2) | C1B—C6B—C7B—N8B | 0.5 (2) |
O10A—C7A—N8A—C9A | −177.91 (18) | O10B—C7B—N8B—C9B | 179.60 (18) |
C6A—C7A—N8A—C9A | 1.5 (2) | C6B—C7B—N8B—C9B | 0.1 (2) |
O10A—C7A—N8A—C11A | −0.6 (3) | O10B—C7B—N8B—C11B | −2.1 (3) |
C6A—C7A—N8A—C11A | 178.87 (16) | C6B—C7B—N8B—C11B | 178.37 (16) |
C7A—N8A—C9A—C12A | 179.28 (17) | C7B—N8B—C9B—C12B | −179.94 (18) |
C11A—N8A—C9A—C12A | 2.2 (3) | C11B—N8B—C9B—C12B | 1.9 (3) |
C7A—N8A—C9A—C1A | −1.2 (2) | C7B—N8B—C9B—C1B | −0.5 (2) |
C11A—N8A—C9A—C1A | −178.31 (17) | C11B—N8B—C9B—C1B | −178.69 (17) |
C2A—C1A—C9A—C12A | −1.5 (3) | C6B—C1B—C9B—C12B | −179.79 (18) |
C6A—C1A—C9A—C12A | 179.87 (18) | C2B—C1B—C9B—C12B | −0.2 (4) |
C2A—C1A—C9A—N8A | 179.0 (2) | C6B—C1B—C9B—N8B | 0.8 (2) |
C6A—C1A—C9A—N8A | 0.4 (2) | C2B—C1B—C9B—N8B | −179.6 (2) |
N8A—C9A—C12A—N13A | −7.3 (3) | N8B—C9B—C12B—N13B | 2.2 (3) |
C1A—C9A—C12A—N13A | 173.28 (18) | C1B—C9B—C12B—N13B | −177.04 (19) |
N8A—C9A—C12A—C14A | 177.50 (17) | N8B—C9B—C12B—C14B | 179.39 (17) |
C1A—C9A—C12A—C14A | −1.9 (3) | C1B—C9B—C12B—C14B | 0.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N13A—H13A···N15Bi | 0.97 | 2.08 | 3.035 (3) | 169 |
N13B—H13C···O10Aii | 0.94 | 2.04 | 2.948 (2) | 163 |
N13B—H13D···N13Aiii | 0.97 | 2.52 | 3.238 (3) | 131 |
Symmetry codes: (i) x, y−1, z−1; (ii) −x+1, −y+1, −z+1; (iii) x, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C11H9N3O |
Mr | 199.21 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 8.5021 (7), 8.5080 (6), 14.0412 (11) |
α, β, γ (°) | 80.741 (5), 80.797 (5), 68.329 (4) |
V (Å3) | 925.98 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.44 × 0.30 × 0.24 |
Data collection | |
Diffractometer | Bruker SMART APEXII diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13710, 4570, 3668 |
Rint | 0.095 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.114, 0.97 |
No. of reflections | 4570 |
No. of parameters | 274 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.29 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N13A—H13A···N15Bi | 0.97 | 2.08 | 3.035 (3) | 169 |
N13B—H13C···O10Aii | 0.94 | 2.04 | 2.948 (2) | 163 |
N13B—H13D···N13Aiii | 0.97 | 2.52 | 3.238 (3) | 131 |
Symmetry codes: (i) x, y−1, z−1; (ii) −x+1, −y+1, −z+1; (iii) x, y, z+1. |
Acknowledgements
The authors thank the Deutsche Forschungsgemeinschaft and the Fonds der Chemischen Industrie for Financial Support.
References
Al-Azmi, A., Booth, B. L., Pritchard, R. G. & Proença, F. J. R. P. (2001). J. Chem. Soc. Perkin Trans. 1, pp. 485–486. Web of Science CSD CrossRef Google Scholar
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Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
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Amino(2-alkyl-3-oxo-2,3-dihydro-1H-isoindol-1-ylidene)acetonitriles are readily obtained in a three-component reaction between 2-carboxybenzaldehyde (2-formylbenzoic acid), aliphatic amines and cyanide in acidic medium. While steric hindrance is a decisive factor and the reaction fails for α-branched primary amines such as isopropylamine, all tested unbranched primary amines give the desired products. Consequently, the highest yield of 53% is found for the preparation of the title compound, in which unfavorable steric interactions are reduced to a minimum. Despite the fact that this compound had been obtained as the prototype example of the series, the determination of its crystal structure was hampered by twinning of the crystals. Compared to the N-benzyl derivative described earlier (Opatz & Ferenc, 2004), the exocyclic aminoacetonitrile unit is even less twisted against the plane of the bicyclic π-system (5.0 (1)° and 1.7 (2)°) (Fig. 1). Furthermore, the compound forms a hydrogen bonded network, in which both exocyclic nitrogen atoms as well as the oxygen atom act as acceptors and the NH2 group is the double donor. Centrosymetrically related molecules of the same residue form π-π-interactions. The distances between the centroids are 4.326 (1)Å and 3.826 (1)Å for the rings C1–C6 of A and B respectively (Fig. 2).