organic compounds
2-C-Cyclohexyl-2,3-O-isopropylideneerythrofuranose
aDiscipline of Chemistry, University of Adelaide, 5005 South Australia, Australia, bDiscipline of Wine and Horticulture, University of Adelaide, Waite Campus, Glen, Osmond 5064, South Australia, Australia, and cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
In the title compound, C13H22O4, the acetonide ring adopts an with one of the O atoms as the flap atom, whereas a twisted conformation is found for the furanose ring. Centrosymmetric eight-membered {⋯OCOH}2 synthons involving the hydroxy H and acetonide O atoms are found in the These are linked into a supramolecular chain in the a-axis direction via C—H⋯O contacts.
Related literature
For the dihydroxylation of the olefin portion of 1,2-dioxines, see: Robinson et al. (2006, 2009); Valente et al. (2009); Pedersen et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku/MSC, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2009).
Supporting information
10.1107/S1600536809048557/hg2594sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809048557/hg2594Isup2.hkl
For full synthetic procedures and characterization data see Pedersen et al. (2009) and Robinson et al. (2009). To a stirred solution of Co(salen)2 (27 mg, 0.08 mmol) in THF (5 ml) at ambient temperature was added (3aR,7aS)-3a-cyclohexyl-tetrahydro-2,2-dimethyl-[1,3]dioxolo[4,5-d][1,2]dioxine (803 mg, 3.31 mmol). The reaction left to stir until complete by TLC (~16 h). All volatiles were removed in vacuo giving a crude mixture of regioisomers in a 43:57 ratio. The isomers were completely separated by flash
giving a combined total yield of 779 mg (97%). Compound (I) was isolated as a colourless solid (337 mg), and the pure material was recrystallized by slowly evaporating a 1:1 mixture of dichloromethane/heptane to give colourless prisms, m. pt. 391–394 K. The compound was found to exist solely in its cyclic hemi-acetal form(s) both as a solid indicated by IR (absence of carbonyl signal), and in CDCl3 solution which revealed a 94:6 anomeric ratio.Carbon-bound H-atoms were placed in calculated positions (C–H 0.98–1.00 Å) and were included in the
in the riding model approximation with Uiso(H) set to 1.2–1.5Ueq(C). A rotating group model was used for the methyl groups. The O–bound H-atom was located in a difference Fourier map and was refined with an O–H restraint of 0.840±0.001 Å, and with Uiso(H) = 1.5Ueq(O).Data collection: CrystalClear (Rigaku/MSC, 2005); cell
CrystalClear (Rigaku/MSC, 2005); data reduction: CrystalClear (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2009).C13H22O4 | Z = 2 |
Mr = 242.31 | F(000) = 264 |
Triclinic, P1 | Dx = 1.237 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 5.454 (3) Å | Cell parameters from 657 reflections |
b = 9.908 (3) Å | θ = 2.1–30.2° |
c = 12.442 (5) Å | µ = 0.09 mm−1 |
α = 93.29 (3)° | T = 153 K |
β = 94.95 (4)° | Needle, colourless |
γ = 102.94 (3)° | 0.24 × 0.15 × 0.13 mm |
V = 650.8 (5) Å3 |
Rigaku AFC12K/SATURN724 diffractometer | 2224 independent reflections |
Radiation source: fine-focus sealed tube | 2064 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
ω scans | θmax = 25.0°, θmin = 2.1° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −6→5 |
Tmin = 0.789, Tmax = 1 | k = −11→11 |
4992 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.066P)2 + 0.1734P] where P = (Fo2 + 2Fc2)/3 |
2224 reflections | (Δ/σ)max < 0.001 |
156 parameters | Δρmax = 0.18 e Å−3 |
1 restraint | Δρmin = −0.20 e Å−3 |
C13H22O4 | γ = 102.94 (3)° |
Mr = 242.31 | V = 650.8 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.454 (3) Å | Mo Kα radiation |
b = 9.908 (3) Å | µ = 0.09 mm−1 |
c = 12.442 (5) Å | T = 153 K |
α = 93.29 (3)° | 0.24 × 0.15 × 0.13 mm |
β = 94.95 (4)° |
Rigaku AFC12K/SATURN724 diffractometer | 2224 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 2064 reflections with I > 2σ(I) |
Tmin = 0.789, Tmax = 1 | Rint = 0.020 |
4992 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 1 restraint |
wR(F2) = 0.124 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.18 e Å−3 |
2224 reflections | Δρmin = −0.20 e Å−3 |
156 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.69690 (18) | 0.26256 (11) | 0.70713 (8) | 0.0281 (3) | |
O2 | 1.0523 (2) | 0.34466 (12) | 0.62499 (9) | 0.0352 (3) | |
O3 | 0.9937 (2) | 0.48884 (11) | 0.85907 (9) | 0.0377 (3) | |
O4 | 1.0310 (3) | 0.31604 (12) | 0.97416 (9) | 0.0439 (4) | |
H4O | 1.0281 | 0.3703 | 1.0282 | 0.066* | |
C1 | 0.7854 (3) | 0.33328 (17) | 0.61509 (12) | 0.0312 (4) | |
C2 | 1.1367 (3) | 0.33878 (16) | 0.73567 (13) | 0.0320 (4) | |
H2 | 1.2783 | 0.2898 | 0.7425 | 0.038* | |
C3 | 0.9031 (3) | 0.25734 (15) | 0.78511 (12) | 0.0270 (4) | |
C4 | 0.8885 (3) | 0.35109 (16) | 0.88634 (12) | 0.0327 (4) | |
H4 | 0.7088 | 0.3415 | 0.9019 | 0.039* | |
C5 | 1.2089 (3) | 0.47939 (18) | 0.80110 (15) | 0.0410 (4) | |
H5A | 1.3609 | 0.4853 | 0.8524 | 0.049* | |
H5B | 1.2450 | 0.5556 | 0.7526 | 0.049* | |
C6 | 0.7237 (3) | 0.47484 (18) | 0.61632 (14) | 0.0366 (4) | |
H6A | 0.5397 | 0.4637 | 0.6085 | 0.055* | |
H6B | 0.7959 | 0.5243 | 0.5562 | 0.055* | |
H6C | 0.7954 | 0.5282 | 0.6850 | 0.055* | |
C7 | 0.6697 (4) | 0.2440 (2) | 0.51267 (14) | 0.0446 (5) | |
H7A | 0.4850 | 0.2278 | 0.5085 | 0.067* | |
H7B | 0.7193 | 0.1549 | 0.5134 | 0.067* | |
H7C | 0.7299 | 0.2916 | 0.4497 | 0.067* | |
C8 | 0.9010 (3) | 0.10690 (15) | 0.80714 (12) | 0.0281 (4) | |
H8 | 1.0454 | 0.1086 | 0.8629 | 0.034* | |
C9 | 0.9368 (3) | 0.01889 (16) | 0.70736 (14) | 0.0353 (4) | |
H9A | 0.7968 | 0.0159 | 0.6504 | 0.042* | |
H9B | 1.0973 | 0.0623 | 0.6788 | 0.042* | |
C10 | 0.9421 (3) | −0.12889 (17) | 0.73441 (16) | 0.0410 (4) | |
H10A | 0.9581 | −0.1844 | 0.6677 | 0.049* | |
H10B | 1.0915 | −0.1265 | 0.7863 | 0.049* | |
C11 | 0.7028 (3) | −0.19803 (17) | 0.78331 (14) | 0.0363 (4) | |
H11A | 0.5557 | −0.2117 | 0.7280 | 0.044* | |
H11B | 0.7179 | −0.2905 | 0.8053 | 0.044* | |
C12 | 0.6588 (3) | −0.11062 (17) | 0.88099 (14) | 0.0376 (4) | |
H12A | 0.7936 | −0.1083 | 0.9402 | 0.045* | |
H12B | 0.4948 | −0.1539 | 0.9067 | 0.045* | |
C13 | 0.6576 (3) | 0.03762 (17) | 0.85399 (13) | 0.0343 (4) | |
H13A | 0.6391 | 0.0929 | 0.9204 | 0.041* | |
H13B | 0.5107 | 0.0361 | 0.8010 | 0.041* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0218 (5) | 0.0379 (6) | 0.0252 (6) | 0.0082 (4) | 0.0014 (4) | 0.0048 (4) |
O2 | 0.0277 (6) | 0.0454 (7) | 0.0345 (6) | 0.0098 (5) | 0.0089 (5) | 0.0062 (5) |
O3 | 0.0485 (7) | 0.0307 (6) | 0.0335 (7) | 0.0112 (5) | −0.0019 (5) | −0.0002 (5) |
O4 | 0.0662 (8) | 0.0383 (7) | 0.0279 (6) | 0.0212 (6) | −0.0115 (6) | −0.0033 (5) |
C1 | 0.0266 (8) | 0.0414 (9) | 0.0262 (8) | 0.0078 (6) | 0.0047 (6) | 0.0051 (6) |
C2 | 0.0240 (8) | 0.0352 (8) | 0.0373 (9) | 0.0082 (6) | 0.0009 (6) | 0.0041 (7) |
C3 | 0.0234 (7) | 0.0332 (8) | 0.0250 (8) | 0.0095 (6) | −0.0009 (6) | −0.0001 (6) |
C4 | 0.0413 (9) | 0.0312 (8) | 0.0264 (8) | 0.0125 (7) | −0.0015 (7) | 0.0008 (6) |
C5 | 0.0334 (9) | 0.0370 (9) | 0.0483 (10) | 0.0027 (7) | −0.0044 (7) | 0.0023 (8) |
C6 | 0.0343 (9) | 0.0440 (10) | 0.0337 (9) | 0.0121 (7) | 0.0037 (7) | 0.0100 (7) |
C7 | 0.0490 (11) | 0.0548 (11) | 0.0272 (9) | 0.0082 (8) | −0.0003 (8) | 0.0005 (8) |
C8 | 0.0260 (8) | 0.0313 (8) | 0.0272 (8) | 0.0084 (6) | 0.0005 (6) | 0.0000 (6) |
C9 | 0.0347 (9) | 0.0351 (9) | 0.0373 (9) | 0.0079 (7) | 0.0124 (7) | −0.0006 (7) |
C10 | 0.0407 (10) | 0.0329 (9) | 0.0506 (11) | 0.0097 (7) | 0.0137 (8) | −0.0047 (7) |
C11 | 0.0380 (9) | 0.0314 (8) | 0.0378 (9) | 0.0050 (7) | 0.0042 (7) | −0.0006 (7) |
C12 | 0.0432 (10) | 0.0365 (9) | 0.0340 (9) | 0.0088 (7) | 0.0070 (7) | 0.0061 (7) |
C13 | 0.0369 (9) | 0.0369 (9) | 0.0319 (9) | 0.0119 (7) | 0.0107 (7) | 0.0027 (7) |
O1—C3 | 1.4328 (18) | C7—H7A | 0.9800 |
O1—C1 | 1.4392 (19) | C7—H7B | 0.9800 |
O2—C2 | 1.423 (2) | C7—H7C | 0.9800 |
O2—C1 | 1.429 (2) | C8—C9 | 1.528 (2) |
O3—C4 | 1.429 (2) | C8—C13 | 1.531 (2) |
O3—C5 | 1.447 (2) | C8—H8 | 1.0000 |
O4—C4 | 1.392 (2) | C9—C10 | 1.527 (2) |
O4—H4O | 0.8399 | C9—H9A | 0.9900 |
C1—C7 | 1.512 (2) | C9—H9B | 0.9900 |
C1—C6 | 1.513 (2) | C10—C11 | 1.526 (2) |
C2—C5 | 1.526 (2) | C10—H10A | 0.9900 |
C2—C3 | 1.544 (2) | C10—H10B | 0.9900 |
C2—H2 | 1.0000 | C11—C12 | 1.519 (2) |
C3—C8 | 1.529 (2) | C11—H11A | 0.9900 |
C3—C4 | 1.540 (2) | C11—H11B | 0.9900 |
C4—H4 | 1.0000 | C12—C13 | 1.527 (2) |
C5—H5A | 0.9900 | C12—H12A | 0.9900 |
C5—H5B | 0.9900 | C12—H12B | 0.9900 |
C6—H6A | 0.9800 | C13—H13A | 0.9900 |
C6—H6B | 0.9800 | C13—H13B | 0.9900 |
C6—H6C | 0.9800 | ||
C3—O1—C1 | 111.24 (11) | C1—C7—H7B | 109.5 |
C2—O2—C1 | 108.79 (12) | H7A—C7—H7B | 109.5 |
C4—O3—C5 | 105.95 (12) | C1—C7—H7C | 109.5 |
C4—O4—H4O | 108.8 | H7A—C7—H7C | 109.5 |
O2—C1—O1 | 105.26 (12) | H7B—C7—H7C | 109.5 |
O2—C1—C7 | 108.62 (14) | C9—C8—C3 | 113.25 (13) |
O1—C1—C7 | 109.15 (13) | C9—C8—C13 | 109.62 (13) |
O2—C1—C6 | 111.35 (13) | C3—C8—C13 | 111.20 (12) |
O1—C1—C6 | 110.47 (13) | C9—C8—H8 | 107.5 |
C7—C1—C6 | 111.76 (14) | C3—C8—H8 | 107.5 |
O2—C2—C5 | 114.39 (14) | C13—C8—H8 | 107.5 |
O2—C2—C3 | 104.95 (12) | C10—C9—C8 | 111.22 (14) |
C5—C2—C3 | 104.74 (13) | C10—C9—H9A | 109.4 |
O2—C2—H2 | 110.8 | C8—C9—H9A | 109.4 |
C5—C2—H2 | 110.8 | C10—C9—H9B | 109.4 |
C3—C2—H2 | 110.8 | C8—C9—H9B | 109.4 |
O1—C3—C8 | 110.40 (12) | H9A—C9—H9B | 108.0 |
O1—C3—C4 | 108.10 (12) | C11—C10—C9 | 111.32 (14) |
C8—C3—C4 | 114.24 (13) | C11—C10—H10A | 109.4 |
O1—C3—C2 | 103.39 (12) | C9—C10—H10A | 109.4 |
C8—C3—C2 | 116.55 (12) | C11—C10—H10B | 109.4 |
C4—C3—C2 | 103.27 (12) | C9—C10—H10B | 109.4 |
O4—C4—O3 | 111.08 (13) | H10A—C10—H10B | 108.0 |
O4—C4—C3 | 109.45 (12) | C12—C11—C10 | 111.32 (14) |
O3—C4—C3 | 104.59 (13) | C12—C11—H11A | 109.4 |
O4—C4—H4 | 110.5 | C10—C11—H11A | 109.4 |
O3—C4—H4 | 110.5 | C12—C11—H11B | 109.4 |
C3—C4—H4 | 110.5 | C10—C11—H11B | 109.4 |
O3—C5—C2 | 106.01 (13) | H11A—C11—H11B | 108.0 |
O3—C5—H5A | 110.5 | C11—C12—C13 | 111.60 (14) |
C2—C5—H5A | 110.5 | C11—C12—H12A | 109.3 |
O3—C5—H5B | 110.5 | C13—C12—H12A | 109.3 |
C2—C5—H5B | 110.5 | C11—C12—H12B | 109.3 |
H5A—C5—H5B | 108.7 | C13—C12—H12B | 109.3 |
C1—C6—H6A | 109.5 | H12A—C12—H12B | 108.0 |
C1—C6—H6B | 109.5 | C12—C13—C8 | 111.60 (13) |
H6A—C6—H6B | 109.5 | C12—C13—H13A | 109.3 |
C1—C6—H6C | 109.5 | C8—C13—H13A | 109.3 |
H6A—C6—H6C | 109.5 | C12—C13—H13B | 109.3 |
H6B—C6—H6C | 109.5 | C8—C13—H13B | 109.3 |
C1—C7—H7A | 109.5 | H13A—C13—H13B | 108.0 |
C2—O2—C1—O1 | −24.16 (15) | C2—C3—C4—O4 | −89.45 (15) |
C2—O2—C1—C7 | −140.95 (13) | O1—C3—C4—O3 | −79.48 (14) |
C2—O2—C1—C6 | 95.56 (15) | C8—C3—C4—O3 | 157.20 (12) |
C3—O1—C1—O2 | 12.78 (15) | C2—C3—C4—O3 | 29.63 (14) |
C3—O1—C1—C7 | 129.21 (14) | C4—O3—C5—C2 | 34.96 (16) |
C3—O1—C1—C6 | −107.53 (14) | O2—C2—C5—O3 | 99.37 (16) |
C1—O2—C2—C5 | −88.63 (16) | C3—C2—C5—O3 | −14.97 (16) |
C1—O2—C2—C3 | 25.58 (15) | O1—C3—C8—C9 | 62.51 (16) |
C1—O1—C3—C8 | −122.93 (13) | C4—C3—C8—C9 | −175.42 (12) |
C1—O1—C3—C4 | 111.46 (14) | C2—C3—C8—C9 | −55.00 (17) |
C1—O1—C3—C2 | 2.43 (14) | O1—C3—C8—C13 | −61.44 (16) |
O2—C2—C3—O1 | −16.78 (14) | C4—C3—C8—C13 | 60.62 (17) |
C5—C2—C3—O1 | 104.03 (13) | C2—C3—C8—C13 | −178.95 (12) |
O2—C2—C3—C8 | 104.51 (14) | C3—C8—C9—C10 | 178.09 (12) |
C5—C2—C3—C8 | −134.68 (14) | C13—C8—C9—C10 | −57.09 (17) |
O2—C2—C3—C4 | −129.38 (12) | C8—C9—C10—C11 | 56.64 (19) |
C5—C2—C3—C4 | −8.57 (15) | C9—C10—C11—C12 | −54.5 (2) |
C5—O3—C4—O4 | 77.45 (16) | C10—C11—C12—C13 | 53.94 (19) |
C5—O3—C4—C3 | −40.52 (15) | C11—C12—C13—C8 | −55.52 (18) |
O1—C3—C4—O4 | 161.44 (12) | C9—C8—C13—C12 | 56.55 (17) |
C8—C3—C4—O4 | 38.13 (18) | C3—C8—C13—C12 | −177.46 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H40···O3i | 0.84 | 1.95 | 2.787 (2) | 173 |
C2—H2···O1ii | 1.00 | 2.43 | 3.350 (3) | 152 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C13H22O4 |
Mr | 242.31 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 153 |
a, b, c (Å) | 5.454 (3), 9.908 (3), 12.442 (5) |
α, β, γ (°) | 93.29 (3), 94.95 (4), 102.94 (3) |
V (Å3) | 650.8 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.24 × 0.15 × 0.13 |
Data collection | |
Diffractometer | Rigaku AFC12K/SATURN724 diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.789, 1 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4992, 2224, 2064 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.124, 1.09 |
No. of reflections | 2224 |
No. of parameters | 156 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.20 |
Computer programs: CrystalClear (Rigaku/MSC, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O4—H40···O3i | 0.84 | 1.95 | 2.787 (2) | 173 |
C2—H2···O1ii | 1.00 | 2.43 | 3.350 (3) | 152 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) x+1, y, z. |
Footnotes
‡Additional correspondence author, e-mail: dennis.taylor@adelaide.edu.au.
Acknowledgements
We are grateful to the Australian Research Council for financial support. TVR thanks the Commonwealth Government of Australia for a postgraduate scholarship.
References
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Recently we examined the dihydroxylation of the olefin portion of 1,2-dioxines, which provided access to a range of polyhydroxylated core structures upon selective manipulation of the peroxide linkage (Robinson et al., 2006; Robinson et al., 2009; Valente et al., 2009). This methodology was extended to include the synthesis of erythrono-γ-lactones (Pedersen et al., 2009), during the course of which the title compound, (I), was prepared.
The molecular structure of (I), Fig. 1, comprises two fused five-membered rings linked by the C2—C3 bond. The acetonide ring adopts an envelope conformation with the O2 atom being the flap atom. A twisted conformation is found for the furanose ring whereby the O3 atom is endo and the C4 atom is exo. The cyclohexyl group is in the chair conformation. The crystal structure comprises centrosymmetric dimers held by {···OCOH}2 synthons arising from the interaction between the O4-hydroxyl group and the ether-O3 atom, Fig. 2 and Table 1. The resultant eight-membered ring has an elongated chair conformation. The dimeric aggregates are linked into supramolecular chains via C—H···O interactions, Fig. 2 and Table 1. The topology of the supramolecular chain is linear, and is aligned along the a direction.