organic compounds
Methyl 2-allyl-4-hydroxy-2H-1,2-benzothiazine-3-carboxylate 1,1-dioxide
aDepartment of Chemistry, Government College University, Lahore 54000, Pakistan, and bApplied Chemistry Research Centre, PCSIR Laboratories Complex, Ferozpure Road, Lahore 54600, Pakistan
*Correspondence e-mail: iukhan.gcu@gmail.com
In the title compound, C13H13NO5S, the thiazine ring adopts a distorted half-chair conformation. Intramolecular O—H⋯O and C—H⋯O hydrogen bonds give rise to two six-membered hydrogen bonded rings. In the crystal, molecules are linked through weak intermolecular C—H⋯O hydrogen bonds, resulting in a zigzag chain lying along the c axis.
Related literature
For the syntheses of related compounds, see: Braun (1923); Zia-ur-Rehman et al. (2005). For the biological activity of benzothiazines, see: Zia-ur-Rehman et al. (2006, 2009). For related structures, see: Arshad et al. (2009); Fabiola et al. (1998); Zia-ur-Rehman et al. (2007).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.
Supporting information
10.1107/S160053680904673X/is2483sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053680904673X/is2483Isup2.hkl
Allyl iodide (5.04 g, 30.0 mmol) was added drop wise to the mixture of methyl 4-hydroxy-2H-1,2-benzothiazine-3-carboxylate-1,1-dioxide (3.83 g, 15.0 mmol), anhydrous potassium carbonate (1.68 g, 30.0 mmol) and dimethylformamide (20 ml) in a round bottom flask. Contents were stirred at room temperature for 7 h under nitrogen atmosphere and poured over ice cooled water (300 ml) resulting in an immediate formation of a white solid, which was filtered and washed with cold water. Single crystals were obtained by re-crystallization from a methanol solution
All hydrogen atoms were positions geometrically and treated as riding on their parent atoms. The following distances were used: methyl C—H = 0.96 Å, methylene C—H = 0.97 Å, aromatic C—H = 0.93 Å and hydroxyl O—H = 0.82 Å. Uiso(H) was set to 1.2Ueq of the parent atoms or 1.5Ueq for methyl and hydroxyl groups. Large thermal displacement parameters for the terminal carbon atoms (C12 and C13) are observed but the disorder produce was not resolved.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).C13H13NO5S | F(000) = 616 |
Mr = 295.30 | Dx = 1.449 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2ac | Cell parameters from 1619 reflections |
a = 12.4289 (10) Å | θ = 3.1–21.7° |
b = 8.3706 (8) Å | µ = 0.26 mm−1 |
c = 13.0132 (11) Å | T = 296 K |
V = 1353.9 (2) Å3 | Needle, colourless |
Z = 4 | 0.45 × 0.11 × 0.07 mm |
Bruker APEXII CCD area-detector diffractometer | 2808 independent reflections |
Radiation source: fine-focus sealed tube | 1763 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.044 |
ϕ and ω scans | θmax = 28.3°, θmin = 2.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −16→16 |
Tmin = 0.893, Tmax = 0.982 | k = −11→10 |
8404 measured reflections | l = −17→9 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.057 | H-atom parameters constrained |
wR(F2) = 0.103 | w = 1/[σ2(Fo2) + (0.0381P)2 + 0.1044P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max < 0.001 |
2808 reflections | Δρmax = 0.18 e Å−3 |
183 parameters | Δρmin = −0.23 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1046 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.07 (11) |
C13H13NO5S | V = 1353.9 (2) Å3 |
Mr = 295.30 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 12.4289 (10) Å | µ = 0.26 mm−1 |
b = 8.3706 (8) Å | T = 296 K |
c = 13.0132 (11) Å | 0.45 × 0.11 × 0.07 mm |
Bruker APEXII CCD area-detector diffractometer | 2808 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 1763 reflections with I > 2σ(I) |
Tmin = 0.893, Tmax = 0.982 | Rint = 0.044 |
8404 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | H-atom parameters constrained |
wR(F2) = 0.103 | Δρmax = 0.18 e Å−3 |
S = 1.06 | Δρmin = −0.23 e Å−3 |
2808 reflections | Absolute structure: Flack (1983), 1046 Friedel pairs |
183 parameters | Absolute structure parameter: 0.07 (11) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | −0.11229 (6) | 0.28643 (12) | 0.49624 (9) | 0.0550 (3) | |
O1 | −0.12270 (18) | 0.1530 (4) | 0.5634 (3) | 0.0733 (9) | |
O2 | −0.19486 (15) | 0.4041 (3) | 0.4937 (3) | 0.0714 (8) | |
O3 | 0.18469 (19) | 0.0795 (3) | 0.4129 (2) | 0.0669 (9) | |
H3O | 0.2303 | 0.0963 | 0.4571 | 0.100* | |
O4 | 0.26461 (18) | 0.2122 (3) | 0.5724 (2) | 0.0658 (8) | |
O5 | 0.16238 (19) | 0.3843 (3) | 0.6600 (2) | 0.0612 (7) | |
N1 | 0.0004 (2) | 0.3754 (3) | 0.5229 (2) | 0.0490 (9) | |
C1 | −0.0885 (3) | 0.2109 (4) | 0.3733 (3) | 0.0487 (10) | |
C2 | −0.1708 (3) | 0.1997 (5) | 0.3013 (4) | 0.0647 (12) | |
H2 | −0.2396 | 0.2360 | 0.3168 | 0.078* | |
C3 | −0.1488 (4) | 0.1344 (5) | 0.2074 (4) | 0.0737 (13) | |
H3A | −0.2034 | 0.1247 | 0.1590 | 0.088* | |
C4 | −0.0462 (4) | 0.0828 (5) | 0.1837 (4) | 0.0721 (12) | |
H4 | −0.0319 | 0.0406 | 0.1191 | 0.087* | |
C5 | 0.0348 (3) | 0.0935 (5) | 0.2553 (3) | 0.0602 (12) | |
H5 | 0.1032 | 0.0564 | 0.2391 | 0.072* | |
C6 | 0.0156 (3) | 0.1588 (4) | 0.3509 (3) | 0.0468 (9) | |
C7 | 0.1002 (3) | 0.1766 (4) | 0.4281 (3) | 0.0467 (9) | |
C8 | 0.0945 (2) | 0.2785 (4) | 0.5071 (4) | 0.0450 (9) | |
C9 | 0.1819 (3) | 0.2889 (4) | 0.5819 (3) | 0.0502 (9) | |
C10 | 0.2475 (4) | 0.3995 (6) | 0.7344 (4) | 0.0867 (14) | |
H10A | 0.3070 | 0.4555 | 0.7042 | 0.130* | |
H10B | 0.2706 | 0.2951 | 0.7557 | 0.130* | |
H10C | 0.2218 | 0.4579 | 0.7930 | 0.130* | |
C11 | 0.0106 (3) | 0.5495 (4) | 0.5090 (3) | 0.0595 (10) | |
H11A | 0.0695 | 0.5878 | 0.5513 | 0.071* | |
H11B | −0.0548 | 0.6004 | 0.5331 | 0.071* | |
C12 | 0.0304 (4) | 0.5986 (7) | 0.4006 (5) | 0.1008 (19) | |
H12 | 0.0732 | 0.5271 | 0.3642 | 0.121* | |
C13 | 0.0036 (6) | 0.7061 (11) | 0.3530 (7) | 0.161 (3) | |
H13A | −0.0395 | 0.7845 | 0.3826 | 0.194* | |
H13B | 0.0249 | 0.7154 | 0.2848 | 0.194* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0376 (4) | 0.0683 (6) | 0.0593 (6) | 0.0050 (4) | 0.0069 (5) | 0.0078 (7) |
O1 | 0.0553 (15) | 0.088 (2) | 0.076 (2) | −0.0060 (14) | 0.0169 (15) | 0.0296 (19) |
O2 | 0.0418 (12) | 0.0919 (19) | 0.080 (2) | 0.0220 (12) | 0.0017 (16) | −0.0075 (19) |
O3 | 0.0477 (15) | 0.0674 (19) | 0.086 (3) | 0.0147 (14) | −0.0021 (13) | −0.0186 (15) |
O4 | 0.0474 (14) | 0.0682 (17) | 0.082 (2) | 0.0146 (13) | −0.0103 (13) | −0.0130 (18) |
O5 | 0.0537 (14) | 0.0741 (19) | 0.0557 (19) | 0.0121 (13) | −0.0078 (13) | −0.0097 (16) |
N1 | 0.0439 (14) | 0.0501 (18) | 0.053 (3) | 0.0077 (13) | 0.0021 (12) | 0.0005 (16) |
C1 | 0.046 (2) | 0.037 (2) | 0.064 (3) | −0.0039 (16) | −0.0024 (18) | 0.006 (2) |
C2 | 0.055 (2) | 0.055 (3) | 0.084 (4) | 0.005 (2) | −0.012 (2) | −0.001 (3) |
C3 | 0.074 (3) | 0.072 (3) | 0.075 (4) | 0.001 (2) | −0.025 (2) | −0.010 (3) |
C4 | 0.092 (3) | 0.064 (3) | 0.060 (3) | −0.005 (2) | −0.011 (3) | −0.016 (2) |
C5 | 0.057 (2) | 0.052 (3) | 0.072 (4) | −0.0030 (18) | 0.001 (2) | −0.013 (2) |
C6 | 0.0473 (19) | 0.039 (2) | 0.054 (3) | −0.0024 (15) | −0.0026 (18) | −0.0014 (19) |
C7 | 0.0384 (18) | 0.043 (2) | 0.059 (3) | 0.0018 (15) | 0.0066 (18) | 0.0058 (19) |
C8 | 0.0376 (15) | 0.0445 (19) | 0.053 (3) | 0.0037 (15) | 0.005 (2) | 0.001 (2) |
C9 | 0.048 (2) | 0.046 (2) | 0.057 (3) | 0.0034 (18) | 0.0015 (19) | 0.005 (2) |
C10 | 0.077 (2) | 0.113 (4) | 0.070 (3) | 0.024 (3) | −0.031 (2) | −0.027 (3) |
C11 | 0.061 (2) | 0.050 (2) | 0.068 (3) | 0.0065 (17) | −0.002 (2) | 0.001 (2) |
C12 | 0.093 (4) | 0.070 (4) | 0.139 (6) | 0.008 (3) | 0.010 (3) | 0.036 (4) |
C13 | 0.211 (9) | 0.131 (7) | 0.142 (7) | −0.031 (6) | −0.035 (6) | 0.050 (5) |
S1—O2 | 1.423 (2) | C4—C5 | 1.375 (5) |
S1—O1 | 1.424 (3) | C4—H4 | 0.9300 |
S1—N1 | 1.625 (3) | C5—C6 | 1.380 (5) |
S1—C1 | 1.746 (4) | C5—H5 | 0.9300 |
O3—C7 | 1.343 (4) | C6—C7 | 1.462 (5) |
O3—H3O | 0.8200 | C7—C8 | 1.338 (5) |
O4—C9 | 1.218 (4) | C8—C9 | 1.461 (5) |
O5—C9 | 1.315 (4) | C10—H10A | 0.9600 |
O5—C10 | 1.440 (5) | C10—H10B | 0.9600 |
N1—C8 | 1.438 (4) | C10—H10C | 0.9600 |
N1—C11 | 1.473 (4) | C11—C12 | 1.490 (7) |
C1—C2 | 1.390 (5) | C11—H11A | 0.9700 |
C1—C6 | 1.396 (5) | C11—H11B | 0.9700 |
C2—C3 | 1.366 (6) | C12—C13 | 1.142 (8) |
C2—H2 | 0.9300 | C12—H12 | 0.9300 |
C3—C4 | 1.380 (6) | C13—H13A | 0.9300 |
C3—H3A | 0.9300 | C13—H13B | 0.9300 |
O2—S1—O1 | 119.46 (17) | C1—C6—C7 | 119.4 (3) |
O2—S1—N1 | 108.03 (15) | C8—C7—O3 | 122.7 (3) |
O1—S1—N1 | 107.87 (16) | C8—C7—C6 | 123.7 (3) |
O2—S1—C1 | 110.57 (18) | O3—C7—C6 | 113.5 (3) |
O1—S1—C1 | 107.1 (2) | C7—C8—N1 | 120.8 (3) |
N1—S1—C1 | 102.48 (15) | C7—C8—C9 | 120.7 (3) |
C7—O3—H3O | 109.5 | N1—C8—C9 | 118.4 (3) |
C9—O5—C10 | 116.0 (3) | O4—C9—O5 | 123.6 (3) |
C8—N1—C11 | 118.1 (3) | O4—C9—C8 | 121.9 (4) |
C8—N1—S1 | 114.3 (2) | O5—C9—C8 | 114.4 (3) |
C11—N1—S1 | 120.1 (2) | O5—C10—H10A | 109.5 |
C2—C1—C6 | 121.4 (4) | O5—C10—H10B | 109.5 |
C2—C1—S1 | 121.2 (3) | H10A—C10—H10B | 109.5 |
C6—C1—S1 | 117.5 (3) | O5—C10—H10C | 109.5 |
C3—C2—C1 | 118.8 (4) | H10A—C10—H10C | 109.5 |
C3—C2—H2 | 120.6 | H10B—C10—H10C | 109.5 |
C1—C2—H2 | 120.6 | N1—C11—C12 | 113.8 (4) |
C2—C3—C4 | 120.7 (4) | N1—C11—H11A | 108.8 |
C2—C3—H3A | 119.7 | C12—C11—H11A | 108.8 |
C4—C3—H3A | 119.7 | N1—C11—H11B | 108.8 |
C5—C4—C3 | 120.3 (4) | C12—C11—H11B | 108.8 |
C5—C4—H4 | 119.9 | H11A—C11—H11B | 107.7 |
C3—C4—H4 | 119.9 | C13—C12—C11 | 133.1 (7) |
C4—C5—C6 | 120.7 (4) | C13—C12—H12 | 113.5 |
C4—C5—H5 | 119.7 | C11—C12—H12 | 113.5 |
C6—C5—H5 | 119.7 | C12—C13—H13A | 120.0 |
C5—C6—C1 | 118.1 (3) | C12—C13—H13B | 120.0 |
C5—C6—C7 | 122.4 (3) | H13A—C13—H13B | 120.0 |
O2—S1—N1—C8 | −167.6 (2) | S1—C1—C6—C7 | −2.9 (5) |
O1—S1—N1—C8 | 62.0 (3) | C5—C6—C7—C8 | 159.4 (4) |
C1—S1—N1—C8 | −50.8 (3) | C1—C6—C7—C8 | −19.9 (6) |
O2—S1—N1—C11 | −18.4 (4) | C5—C6—C7—O3 | −21.1 (5) |
O1—S1—N1—C11 | −148.8 (3) | C1—C6—C7—O3 | 159.6 (3) |
C1—S1—N1—C11 | 98.4 (3) | O3—C7—C8—N1 | −177.3 (3) |
O2—S1—C1—C2 | −31.7 (4) | C6—C7—C8—N1 | 2.2 (6) |
O1—S1—C1—C2 | 100.0 (3) | O3—C7—C8—C9 | 0.0 (6) |
N1—S1—C1—C2 | −146.6 (3) | C6—C7—C8—C9 | 179.5 (3) |
O2—S1—C1—C6 | 149.8 (3) | C11—N1—C8—C7 | −112.6 (4) |
O1—S1—C1—C6 | −78.6 (3) | S1—N1—C8—C7 | 37.3 (4) |
N1—S1—C1—C6 | 34.8 (3) | C11—N1—C8—C9 | 70.1 (4) |
C6—C1—C2—C3 | 0.8 (6) | S1—N1—C8—C9 | −140.1 (3) |
S1—C1—C2—C3 | −177.7 (3) | C10—O5—C9—O4 | 2.4 (5) |
C1—C2—C3—C4 | −1.0 (6) | C10—O5—C9—C8 | −179.0 (3) |
C2—C3—C4—C5 | 1.3 (7) | C7—C8—C9—O4 | 3.8 (6) |
C3—C4—C5—C6 | −1.3 (6) | N1—C8—C9—O4 | −178.8 (3) |
C4—C5—C6—C1 | 1.1 (6) | C7—C8—C9—O5 | −174.8 (3) |
C4—C5—C6—C7 | −178.2 (4) | N1—C8—C9—O5 | 2.6 (5) |
C2—C1—C6—C5 | −0.8 (6) | C8—N1—C11—C12 | 68.0 (4) |
S1—C1—C6—C5 | 177.7 (3) | S1—N1—C11—C12 | −80.1 (4) |
C2—C1—C6—C7 | 178.5 (3) | N1—C11—C12—C13 | 144.7 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O4 | 0.82 | 1.84 | 2.555 (4) | 146 |
C11—H11A···O5 | 0.97 | 2.50 | 3.055 (4) | 116 |
C3—H3A···O1i | 0.93 | 2.51 | 3.406 (6) | 163 |
Symmetry code: (i) −x−1/2, y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H13NO5S |
Mr | 295.30 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 296 |
a, b, c (Å) | 12.4289 (10), 8.3706 (8), 13.0132 (11) |
V (Å3) | 1353.9 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.45 × 0.11 × 0.07 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.893, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8404, 2808, 1763 |
Rint | 0.044 |
(sin θ/λ)max (Å−1) | 0.668 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.103, 1.06 |
No. of reflections | 2808 |
No. of parameters | 183 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.23 |
Absolute structure | Flack (1983), 1046 Friedel pairs |
Absolute structure parameter | 0.07 (11) |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009) and Mercury (Macrae et al., 2006), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O4 | 0.82 | 1.84 | 2.555 (4) | 146 |
C11—H11A···O5 | 0.97 | 2.50 | 3.055 (4) | 116 |
C3—H3A···O1i | 0.93 | 2.51 | 3.406 (6) | 163 |
Symmetry code: (i) −x−1/2, y, z−1/2. |
Acknowledgements
The authors are grateful to the Higher Education Commission for a grant to purchase the diffractometer and PCSIR laboratories complex, Lahore for providing necessary chemicals and laboratory facilities.
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Benzothiazine1,1-dioxides are familiar for their different type of biological activities (Zia-ur-Rehman et al., 2006) and have been synthesized continuously since the very first synthesis in 1923 (Braun, 1923). In continuation of our work on he synthesis of various bioactive benzothiazines (Zia-ur-Rehman et al., 2005, 2009), we herein report the crystal structure of the title compound (I), thiazine ring exhibits a distorted half-chair conformation with S1/C1/C6/C7 atoms lying in a plane and N1 showing significant departure from the plane due to its pyramidal geometry projecting the allyl group approximately perpendicular to the ring (Fig. 1). Like previously reported crystal structures of various 1,2-benzothiazine 1,1-dioxide derivatives (Arshad et al., 2009; Fabiola et al., 1998; Zia-ur-Rehman et al., 2007), the enolic hydrogen on O3 is involved in intramolecular hydrogen bonding (Table1). In addition, C11—H11A···O5 hydrogen bond gives rise to another six-membered hydrogen ring in the molecule while C7—C8 bond length [1.338 (5) Å] (very close to normal C—C bond; 1.36 Å) indicates a partial double-bond character indicating the dominance of enolic form in the molecule. The C1—S1 bond distance [1.746 (4) Å] is as expected for typical C(sp2)—S bond (1.751 Å). Each molecule is linked to neighbouring molecules via weak C—H···O=S interactions giving rise to zigzag chains along the c axis (Fig. 2).