metal-organic compounds
catena-Poly[[triaqua(pyridine-κN)nickel(II)]-μ-sulfato-κ2O:O′]
aKey Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (Ministry of Education of China), School of Chemistry & Chemical Engineering, Guangxi Normal University, Guilin 541004, People's Republic of China
*Correspondence e-mail: chenzfgxnu@yahoo.com
The title compound, [Ni(SO4)(C5H5N)(H2O)3]n, was synthesized by the hydrothermal reaction of NiSO4·6H2O, pyridine and water. The central NiII atom is coordinated in a distorted octahedral environment by a pyridine N atom, three aqua O atoms and two O atoms of bridging sulfate anions, yielding a zigzag chain. A three-dimensional network is generated via complex hydrogen bonds involving the sulfate and aqua ligands and a pyridine C—H group.
Related literature
For the structures of related nickel(II) complexes, see: Wang et al. (2006); Stein et al. (2007).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 1999); cell CrystalClear; data reduction: CrystalStructure (Rigaku/MSC & Rigaku, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809049605/pk2206sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809049605/pk2206Isup2.hkl
Samples of NiSO4.6H2O (0.1 mmol) and pyridine (0.1 mmol) were placed in a thick-walled Pyrex tube (ca 20 cm long). After addition of H2O (1 ml), the tube was frozen with liquid nitrogen, evacuated under vacuum and sealed with a torch. The tube was heated at 110°C for 2 days and then was slowly cooled down to room temperature, and light-green block-shaped crystals were obtained. Yield: 35%.
The H atoms bonded to C atoms were positioned geometrically and refined using a riding model with Uiso(H) = 1.2Ueq(C) (C—H = 0.95 Å). Water H positions were located in an electron-density difference map and refined freely.
Data collection: CrystalClear (Rigaku, 1999); cell
CrystalClear (Rigaku, 1999); data reduction: CrystalStructure (Rigaku/MSC & Rigaku, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. A view of the one-dimensional chain structure that propagates along the b axis. | |
Fig. 3. A packing diagram viewed approximately down the b axis. |
[Ni(SO4)(C5H5N)(H2O)3] | F(000) = 592 |
Mr = 287.92 | Dx = 1.992 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71070 Å |
Hall symbol: -P 2ybc | Cell parameters from 3550 reflections |
a = 11.868 (3) Å | θ = 3.1–25.3° |
b = 7.5745 (14) Å | µ = 2.26 mm−1 |
c = 11.420 (3) Å | T = 193 K |
β = 110.724 (4)° | Block, light-green |
V = 960.2 (3) Å3 | 0.30 × 0.20 × 0.14 mm |
Z = 4 |
Rigaku Mercury CCD diffractometer | 1746 independent reflections |
Radiation source: fine-focus sealed tube | 1641 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
Detector resolution: 7.31 pixels mm-1 | θmax = 25.3°, θmin = 3.3° |
ω scans | h = −14→13 |
Absorption correction: multi-scan (REQAB; Jacobson, 1998) | k = −9→9 |
Tmin = 0.465, Tmax = 0.729 | l = −13→12 |
8854 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.16 | w = 1/[σ2(Fo2) + (0.0672P)2 + 0.4274P] where P = (Fo2 + 2Fc2)/3 |
1746 reflections | (Δ/σ)max = 0.001 |
161 parameters | Δρmax = 0.57 e Å−3 |
6 restraints | Δρmin = −0.84 e Å−3 |
[Ni(SO4)(C5H5N)(H2O)3] | V = 960.2 (3) Å3 |
Mr = 287.92 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.868 (3) Å | µ = 2.26 mm−1 |
b = 7.5745 (14) Å | T = 193 K |
c = 11.420 (3) Å | 0.30 × 0.20 × 0.14 mm |
β = 110.724 (4)° |
Rigaku Mercury CCD diffractometer | 1746 independent reflections |
Absorption correction: multi-scan (REQAB; Jacobson, 1998) | 1641 reflections with I > 2σ(I) |
Tmin = 0.465, Tmax = 0.729 | Rint = 0.040 |
8854 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 6 restraints |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.16 | Δρmax = 0.57 e Å−3 |
1746 reflections | Δρmin = −0.84 e Å−3 |
161 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.65136 (3) | 0.59664 (5) | 0.21049 (4) | 0.0112 (2) | |
S1 | 0.37812 (7) | 0.51034 (10) | 0.20733 (7) | 0.0111 (2) | |
O1 | 0.4632 (2) | 0.5757 (3) | 0.1473 (2) | 0.0144 (5) | |
O2 | 0.3600 (2) | 0.3178 (3) | 0.1818 (2) | 0.0148 (5) | |
O3 | 0.2651 (2) | 0.6067 (3) | 0.1535 (2) | 0.0185 (6) | |
O4 | 0.4322 (2) | 0.5392 (3) | 0.3441 (2) | 0.0163 (5) | |
O5 | 0.6504 (2) | 0.3741 (3) | 0.1062 (2) | 0.0139 (5) | |
H5A | 0.626 (3) | 0.283 (3) | 0.128 (3) | 0.017 (10)* | |
H5B | 0.619 (4) | 0.381 (6) | 0.0300 (11) | 0.033 (13)* | |
O6 | 0.6708 (2) | 0.4525 (3) | 0.3691 (2) | 0.0165 (5) | |
H6A | 0.687 (4) | 0.3472 (19) | 0.367 (4) | 0.037 (13)* | |
H6B | 0.611 (2) | 0.435 (5) | 0.387 (4) | 0.028 (12)* | |
O7 | 0.6283 (2) | 0.7484 (3) | 0.0563 (2) | 0.0212 (6) | |
H7A | 0.632 (4) | 0.724 (5) | −0.0120 (19) | 0.034 (12)* | |
H7B | 0.609 (4) | 0.850 (2) | 0.064 (4) | 0.031 (12)* | |
N1 | 0.8352 (3) | 0.6199 (4) | 0.2656 (3) | 0.0179 (7) | |
C1 | 0.9028 (3) | 0.6672 (5) | 0.3822 (3) | 0.0247 (8) | |
H1 | 0.8637 | 0.6950 | 0.4394 | 0.030* | |
C2 | 1.0269 (3) | 0.6774 (6) | 0.4232 (4) | 0.0325 (9) | |
H2 | 1.0718 | 0.7112 | 0.5069 | 0.039* | |
C3 | 1.0846 (3) | 0.6379 (6) | 0.3407 (4) | 0.0345 (10) | |
H3 | 1.1699 | 0.6441 | 0.3664 | 0.041* | |
C4 | 1.0165 (4) | 0.5894 (5) | 0.2207 (5) | 0.0331 (10) | |
H4 | 1.0539 | 0.5612 | 0.1620 | 0.040* | |
C5 | 0.8929 (3) | 0.5822 (5) | 0.1867 (4) | 0.0255 (9) | |
H5C | 0.8464 | 0.5490 | 0.1034 | 0.031* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0115 (3) | 0.0107 (3) | 0.0109 (3) | −0.00030 (14) | 0.0035 (2) | 0.00009 (15) |
S1 | 0.0122 (4) | 0.0103 (4) | 0.0114 (4) | −0.0005 (3) | 0.0050 (3) | −0.0009 (3) |
O1 | 0.0123 (12) | 0.0198 (13) | 0.0129 (12) | −0.0013 (9) | 0.0066 (10) | 0.0014 (9) |
O2 | 0.0222 (13) | 0.0097 (12) | 0.0127 (11) | −0.0012 (9) | 0.0064 (10) | −0.0036 (10) |
O3 | 0.0172 (13) | 0.0147 (13) | 0.0259 (14) | 0.0034 (9) | 0.0103 (11) | 0.0035 (10) |
O4 | 0.0226 (13) | 0.0160 (12) | 0.0113 (12) | −0.0048 (10) | 0.0071 (10) | −0.0043 (10) |
O5 | 0.0188 (13) | 0.0144 (12) | 0.0081 (12) | −0.0028 (10) | 0.0042 (10) | 0.0010 (10) |
O6 | 0.0158 (13) | 0.0135 (13) | 0.0198 (13) | −0.0005 (11) | 0.0058 (10) | 0.0022 (11) |
O7 | 0.0361 (15) | 0.0135 (14) | 0.0175 (14) | 0.0053 (11) | 0.0139 (12) | 0.0009 (11) |
N1 | 0.0154 (15) | 0.0150 (15) | 0.0223 (16) | −0.0002 (11) | 0.0053 (12) | 0.0016 (12) |
C1 | 0.0198 (19) | 0.029 (2) | 0.0217 (19) | −0.0036 (16) | 0.0025 (15) | −0.0012 (17) |
C2 | 0.020 (2) | 0.035 (2) | 0.033 (2) | −0.0033 (17) | −0.0025 (17) | 0.002 (2) |
C3 | 0.0139 (19) | 0.028 (2) | 0.057 (3) | −0.0045 (16) | 0.007 (2) | 0.004 (2) |
C4 | 0.024 (2) | 0.028 (2) | 0.056 (3) | −0.0004 (17) | 0.025 (2) | 0.002 (2) |
C5 | 0.0198 (19) | 0.029 (2) | 0.030 (2) | −0.0035 (15) | 0.0124 (17) | −0.0038 (17) |
Ni1—O7 | 2.039 (2) | O6—H6B | 0.82 (3) |
Ni1—N1 | 2.053 (3) | O7—H7A | 0.82 (3) |
Ni1—O6 | 2.056 (2) | O7—H7B | 0.815 (10) |
Ni1—O5 | 2.062 (2) | N1—C1 | 1.337 (5) |
Ni1—O1 | 2.096 (2) | N1—C5 | 1.342 (5) |
Ni1—O2i | 2.110 (2) | C1—C2 | 1.380 (5) |
S1—O3 | 1.458 (2) | C1—H1 | 0.9500 |
S1—O4 | 1.479 (2) | C2—C3 | 1.380 (6) |
S1—O2 | 1.488 (2) | C2—H2 | 0.9500 |
S1—O1 | 1.491 (2) | C3—C4 | 1.372 (6) |
O2—Ni1ii | 2.110 (2) | C3—H3 | 0.9500 |
O5—H5A | 0.82 (3) | C4—C5 | 1.379 (6) |
O5—H5B | 0.818 (10) | C4—H4 | 0.9500 |
O6—H6A | 0.821 (10) | C5—H5C | 0.9500 |
O7—Ni1—N1 | 91.13 (11) | H5A—O5—H5B | 108 (4) |
O7—Ni1—O6 | 177.36 (10) | Ni1—O6—H6A | 117 (3) |
N1—Ni1—O6 | 89.97 (11) | Ni1—O6—H6B | 118 (3) |
O7—Ni1—O5 | 89.45 (9) | H6A—O6—H6B | 94 (4) |
N1—Ni1—O5 | 92.04 (11) | Ni1—O7—H7A | 131 (3) |
O6—Ni1—O5 | 92.91 (10) | Ni1—O7—H7B | 113 (3) |
O7—Ni1—O1 | 86.80 (10) | H7A—O7—H7B | 115 (4) |
N1—Ni1—O1 | 177.81 (10) | C1—N1—C5 | 117.1 (3) |
O6—Ni1—O1 | 92.13 (9) | C1—N1—Ni1 | 121.8 (2) |
O5—Ni1—O1 | 87.23 (9) | C5—N1—Ni1 | 121.1 (3) |
O7—Ni1—O2i | 92.22 (9) | N1—C1—C2 | 123.1 (4) |
N1—Ni1—O2i | 91.89 (10) | N1—C1—H1 | 118.5 |
O6—Ni1—O2i | 85.33 (9) | C2—C1—H1 | 118.5 |
O5—Ni1—O2i | 175.69 (9) | C3—C2—C1 | 118.9 (4) |
O1—Ni1—O2i | 88.90 (9) | C3—C2—H2 | 120.5 |
O3—S1—O4 | 111.21 (14) | C1—C2—H2 | 120.5 |
O3—S1—O2 | 111.13 (13) | C4—C3—C2 | 118.8 (4) |
O4—S1—O2 | 109.26 (13) | C4—C3—H3 | 120.6 |
O3—S1—O1 | 108.13 (14) | C2—C3—H3 | 120.6 |
O4—S1—O1 | 108.95 (13) | C3—C4—C5 | 118.9 (4) |
O2—S1—O1 | 108.08 (12) | C3—C4—H4 | 120.6 |
S1—O1—Ni1 | 132.76 (14) | C5—C4—H4 | 120.6 |
S1—O2—Ni1ii | 134.32 (13) | N1—C5—C4 | 123.2 (4) |
Ni1—O5—H5A | 116 (3) | N1—C5—H5C | 118.4 |
Ni1—O5—H5B | 118 (3) | C4—C5—H5C | 118.4 |
O3—S1—O1—Ni1 | 150.13 (18) | O2i—Ni1—N1—C1 | 37.9 (3) |
O4—S1—O1—Ni1 | 29.1 (2) | O7—Ni1—N1—C5 | −52.1 (3) |
O2—S1—O1—Ni1 | −89.5 (2) | O6—Ni1—N1—C5 | 130.3 (3) |
O7—Ni1—O1—S1 | −167.8 (2) | O5—Ni1—N1—C5 | 37.4 (3) |
O6—Ni1—O1—S1 | 9.8 (2) | O2i—Ni1—N1—C5 | −144.4 (3) |
O5—Ni1—O1—S1 | 102.64 (19) | C5—N1—C1—C2 | −0.3 (5) |
O2i—Ni1—O1—S1 | −75.47 (19) | Ni1—N1—C1—C2 | 177.5 (3) |
O3—S1—O2—Ni1ii | −103.2 (2) | N1—C1—C2—C3 | 0.2 (6) |
O4—S1—O2—Ni1ii | 19.9 (2) | C1—C2—C3—C4 | −0.1 (6) |
O1—S1—O2—Ni1ii | 138.29 (18) | C2—C3—C4—C5 | 0.1 (6) |
O7—Ni1—N1—C1 | 130.2 (3) | C1—N1—C5—C4 | 0.3 (5) |
O6—Ni1—N1—C1 | −47.4 (3) | Ni1—N1—C5—C4 | −177.5 (3) |
O5—Ni1—N1—C1 | −140.3 (3) | C3—C4—C5—N1 | −0.3 (6) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+1, y−1/2, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O4ii | 0.82 (3) | 2.04 (3) | 2.849 (3) | 170 (4) |
O5—H5A···S1ii | 0.82 (3) | 2.81 (2) | 3.571 (3) | 157 (3) |
O5—H5B···O1iii | 0.82 (1) | 1.94 (1) | 2.753 (3) | 173 (4) |
O5—H5B···S1iii | 0.82 (1) | 2.85 (2) | 3.584 (3) | 151 (4) |
O6—H6A···O3ii | 0.82 (1) | 1.95 (1) | 2.764 (3) | 172 (4) |
O6—H6A···S1ii | 0.82 (1) | 2.71 (2) | 3.458 (3) | 152 (4) |
O6—H6B···O4 | 0.82 (3) | 2.15 (3) | 2.821 (3) | 139 (4) |
O6—H6B···S1 | 0.82 (3) | 2.85 (4) | 3.336 (3) | 120 (3) |
O7—H7A···O2iii | 0.82 (3) | 2.00 (3) | 2.817 (3) | 176 (4) |
O7—H7A···S1iii | 0.82 (3) | 2.82 (2) | 3.571 (3) | 154 (4) |
O7—H7B···O4i | 0.82 (1) | 1.94 (2) | 2.690 (3) | 153 (4) |
O7—H7B···S1i | 0.82 (1) | 2.84 (4) | 3.372 (3) | 125 (4) |
C4—H4···O3iv | 0.95 | 2.57 | 3.304 (5) | 135 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+1, −y+1, −z; (iv) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [Ni(SO4)(C5H5N)(H2O)3] |
Mr | 287.92 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 193 |
a, b, c (Å) | 11.868 (3), 7.5745 (14), 11.420 (3) |
β (°) | 110.724 (4) |
V (Å3) | 960.2 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.26 |
Crystal size (mm) | 0.30 × 0.20 × 0.14 |
Data collection | |
Diffractometer | Rigaku Mercury CCD diffractometer |
Absorption correction | Multi-scan (REQAB; Jacobson, 1998) |
Tmin, Tmax | 0.465, 0.729 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8854, 1746, 1641 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.110, 1.16 |
No. of reflections | 1746 |
No. of parameters | 161 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.57, −0.84 |
Computer programs: CrystalClear (Rigaku, 1999), CrystalStructure (Rigaku/MSC & Rigaku, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O4i | 0.82 (3) | 2.04 (3) | 2.849 (3) | 170 (4) |
O5—H5A···S1i | 0.82 (3) | 2.805 (18) | 3.571 (3) | 157 (3) |
O5—H5B···O1ii | 0.818 (10) | 1.939 (12) | 2.753 (3) | 173 (4) |
O5—H5B···S1ii | 0.818 (10) | 2.85 (2) | 3.584 (3) | 151 (4) |
O6—H6A···O3i | 0.821 (10) | 1.949 (12) | 2.764 (3) | 172 (4) |
O6—H6A···S1i | 0.821 (10) | 2.71 (2) | 3.458 (3) | 152 (4) |
O6—H6B···O4 | 0.82 (3) | 2.15 (3) | 2.821 (3) | 139 (4) |
O6—H6B···S1 | 0.82 (3) | 2.85 (4) | 3.336 (3) | 120 (3) |
O7—H7A···O2ii | 0.82 (3) | 2.00 (3) | 2.817 (3) | 176 (4) |
O7—H7A···S1ii | 0.82 (3) | 2.82 (2) | 3.571 (3) | 154 (4) |
O7—H7B···O4iii | 0.815 (10) | 1.94 (2) | 2.690 (3) | 153 (4) |
O7—H7B···S1iii | 0.815 (10) | 2.84 (4) | 3.372 (3) | 125 (4) |
C4—H4···O3iv | 0.95 | 2.57 | 3.304 (5) | 134.6 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+1, −y+1, −z; (iii) −x+1, y+1/2, −z+1/2; (iv) x+1, y, z. |
Acknowledgements
The authors thank the National Natural Science Foundation of China (No. 20861002), the 973 Plan of China (2009CB526503), the Natural Science Foundation of Guangxi, China (Nos. 0991003, 0991012Z) and the Open Foundation of the Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources (Ministry of Education of China) for financial support.
References
Jacobson, R. (1998). REQAB. Private communication to the Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (1999). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku/MSC & Rigaku (2000). CrystalStructure. Rigaku/MSC, The Woodands, Texas, USA, and Rigaku Coporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Stein, I., Speldrich, M., Schilder, H., Lueken, H. & Ruschewitz, U. (2007). Z. Anorg. Allg. Chem. 633, 1382–1390. Web of Science CSD CrossRef CAS Google Scholar
Wang, Y., Su, Z.-M., Hao, X.-R., Shao, K.-Z. & Zhao, Y.-H. (2006). Acta Cryst. E62, m322–m324. Web of Science CSD CrossRef IUCr Journals Google Scholar
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The asymmetric unit contains one independent Ni atom, which is octahedrally coordinated by two sulfato anions, three aqua ligands and one pyridine molecule. The bond lengths and angles involving Ni—O(aqua), Ni—N are similar to those of other nickel-carboxylate coordination polymers with pyridine (Wang et al., 2006; Stein et al., 2007), with the Ni center displaying the typical distorted octahedral coordination, which can be viewed from the angles of N1—Ni1—O1 177.81 (10)°, N1—Ni1—O7 91.13 (11)°, O1—Ni1—O6 92.13 (9)°, O5—Ni1—O6 92.91 (10)° (Fig. 1). The SO42- dianion acts as a µ2 bridging ligand, linking two adjacent metal ions and generating a one-dimensional zigzag chain (Fig. 2). The aqua ligands, sulfato groups and C—H of pyridine form extensive hydrogen-bonding interactions (Table 1), resulting in a three-dimensional network (Fig. 3).