organic compounds
2-Methyl-6-(6-methyl-1H-benzimidazol-2-yl)phenol–2-methyl-6-(5-methyl-1H-benzimidazol-2-yl)phenol (3/1)
aSchool of Chemical Science, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
The title compound, 0.75C15H14N2O·0.25C15H14N2O, is a of 2-methyl-6-(6-methyl-1H-benzimidazol-2-yl)phenol as the major component and 2-methyl-6-(5-methyl-1H-benzimidazol-2-yl)phenol as the minor component. The refined site-occupancy ratio is 0.746 (4)/0.254 (4). The conformations of both components are identical except for that of the methyl substituent on the benzene ring of the benzimidazole unit which is positionally disordered over two positions. The molecule is essentially planar, the dihedral angle between the benzimidazole plane and the benzene ring being 3.49 (4)°. An intramolecular O—H⋯N hydrogen bond generates an S(6) ring motif. In the crystal packing, molecules are linked through N—H⋯O hydrogen bonds into chains along [201]. These chains are stacked approximately along the a-axis direction. The crystal packing is further stabilized by weak N—H⋯O and O⋯H⋯N hydrogen bonds, together with weak intermolecular C—H⋯π interactions. A π–π interaction with a centroid–centroid distance of 3.6241 (6) Å is also observed between the substituted phenyl ring and that of the benzimidazole system.
Related literature
For bond-length data, see: Allen et al. (1987). For hydrogen-bond motifs, see: Bernstein et al. (1995). For background to benzimidazoles and their bioactivity, see: Demirayak et al. (2002); Guven et al. (2007); Minoura et al. (2004); Pawar et al. (2005); Thakurdesai et al. (2007); Tomei et al. (2003). For related structures, see: Eltayeb et al. (2007, 2009a,b); Xiao et al. (2009). For the stability of the temperature controller used in the data collection, see Cosier & Glazer, (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536809049770/sj2688sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809049770/sj2688Isup2.hkl
3-Methylsalicylaldehyde (0.5 g, 4 mmol) was added to a solution of 4-methyl-1,2-phenylenediamine (0.244 g, 2 mmol) in ethanol (30 ml). The mixture was refluxed with stirring for half an hour. The resultant yellow solution was filtered. Yellow needle-shaped single crystals of the title compound suitable for x-ray
were obtained by slow evaporation of the filtrate at room temperature over several days.Hydroxy and amide H atoms were located in a difference map and refined isotropically. The remaining H atoms were positioned geometrically and allowed to ride on their parent atoms, with d(C-H) = 0.93 Å for aromatic and 0.96 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the
for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 0.70 Å from C8 and the deepest hole is located at 1.17 Å from C7. One methyl group is positionally disordered over two positions with occupancies 0.746 (4) (for the methyl group bound to C10) and 0.254 (4) (for the methyl group bound to C11), respectively.Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, with 50% probability displacement ellipsoids and the atom-numbering scheme. Open bonds show the minor disorder component | |
Fig. 2. The crystal packing of the major component of the title compound viewed down the a axis. Hydrogen bonds are shown as dashed lines and only the major disorder component is shown. |
0.75C15H14N2O·0.25C15H14N2O | F(000) = 504 |
Mr = 238.28 | Dx = 1.359 Mg m−3 |
Monoclinic, P21/c | Melting point: ?' K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 4.9231 (1) Å | Cell parameters from 3703 reflections |
b = 19.8900 (6) Å | θ = 2.0–31.0° |
c = 12.3199 (3) Å | µ = 0.09 mm−1 |
β = 105.085 (1)° | T = 100 K |
V = 1164.80 (5) Å3 | Needle, yellow |
Z = 4 | 0.59 × 0.17 × 0.10 mm |
Bruker APEXII CCD area-detector diffractometer | 3703 independent reflections |
Radiation source: sealed tube | 3165 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
ϕ and ω scans | θmax = 31.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −7→7 |
Tmin = 0.951, Tmax = 0.992 | k = −28→28 |
34431 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.131 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0668P)2 + 0.4392P] where P = (Fo2 + 2Fc2)/3 |
3703 reflections | (Δ/σ)max = 0.001 |
184 parameters | Δρmax = 0.61 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
0.75C15H14N2O·0.25C15H14N2O | V = 1164.80 (5) Å3 |
Mr = 238.28 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 4.9231 (1) Å | µ = 0.09 mm−1 |
b = 19.8900 (6) Å | T = 100 K |
c = 12.3199 (3) Å | 0.59 × 0.17 × 0.10 mm |
β = 105.085 (1)° |
Bruker APEXII CCD area-detector diffractometer | 3703 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 3165 reflections with I > 2σ(I) |
Tmin = 0.951, Tmax = 0.992 | Rint = 0.030 |
34431 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.131 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.61 e Å−3 |
3703 reflections | Δρmin = −0.20 e Å−3 |
184 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 1.19279 (16) | 0.73306 (4) | 0.38129 (6) | 0.01798 (17) | |
N1 | 0.75983 (18) | 0.80945 (5) | 0.29676 (7) | 0.01616 (18) | |
N2 | 0.51410 (19) | 0.79954 (5) | 0.11676 (8) | 0.01659 (18) | |
C1 | 1.1529 (2) | 0.70454 (5) | 0.27765 (8) | 0.01503 (19) | |
C2 | 1.3414 (2) | 0.65397 (5) | 0.26490 (9) | 0.0167 (2) | |
C3 | 1.3081 (2) | 0.62518 (6) | 0.15941 (10) | 0.0202 (2) | |
H3A | 1.4326 | 0.5918 | 0.1501 | 0.024* | |
C4 | 1.0927 (2) | 0.64511 (6) | 0.06716 (10) | 0.0226 (2) | |
H4A | 1.0756 | 0.6256 | −0.0029 | 0.027* | |
C5 | 0.9042 (2) | 0.69426 (6) | 0.08074 (9) | 0.0189 (2) | |
H5A | 0.7591 | 0.7073 | 0.0196 | 0.023* | |
C6 | 0.9303 (2) | 0.72445 (5) | 0.18570 (8) | 0.01520 (19) | |
C7 | 0.7363 (2) | 0.77685 (5) | 0.20056 (8) | 0.01523 (19) | |
C8 | 0.3873 (2) | 0.85056 (5) | 0.16229 (9) | 0.0164 (2) | |
C9 | 0.1586 (2) | 0.89213 (5) | 0.11465 (9) | 0.0187 (2) | |
H9A | 0.0587 | 0.8876 | 0.0398 | 0.022* | |
C10 | 0.0862 (2) | 0.94063 (6) | 0.18357 (10) | 0.0197 (2) | |
H10A | −0.0692 | 0.9702 | 0.1537 | 0.024* | 0.254 (4) |
C11 | 0.2396 (2) | 0.94650 (6) | 0.29702 (10) | 0.0202 (2) | |
H11A | 0.1853 | 0.9801 | 0.3432 | 0.024* | 0.746 (4) |
C12 | 0.4672 (2) | 0.90501 (6) | 0.34381 (9) | 0.0199 (2) | |
H12A | 0.5665 | 0.9094 | 0.4188 | 0.024* | |
C13 | 0.5427 (2) | 0.85640 (5) | 0.27486 (9) | 0.0163 (2) | |
C14 | 1.5751 (2) | 0.63299 (6) | 0.36352 (9) | 0.0208 (2) | |
H14A | 1.6860 | 0.5988 | 0.3405 | 0.031* | |
H14B | 1.4973 | 0.6156 | 0.4216 | 0.031* | |
H14C | 1.6918 | 0.6711 | 0.3916 | 0.031* | |
C15 | −0.1576 (3) | 0.98865 (7) | 0.13834 (13) | 0.0201 (3) | 0.746 (4) |
H15A | −0.2119 | 0.9866 | 0.0577 | 0.030* | 0.746 (4) |
H15B | −0.1006 | 1.0336 | 0.1620 | 0.030* | 0.746 (4) |
H15C | −0.3142 | 0.9760 | 0.1668 | 0.030* | 0.746 (4) |
C15A | 0.1355 (10) | 0.9949 (2) | 0.3651 (5) | 0.0267 (11) | 0.254 (4) |
H15D | 0.2593 | 0.9959 | 0.4395 | 0.040* | 0.254 (4) |
H15E | −0.0496 | 0.9820 | 0.3689 | 0.040* | 0.254 (4) |
H15F | 0.1282 | 1.0387 | 0.3317 | 0.040* | 0.254 (4) |
H1N2 | 0.445 (4) | 0.7809 (10) | 0.0451 (16) | 0.041 (5)* | |
H1O1 | 1.058 (5) | 0.7671 (11) | 0.3717 (19) | 0.058 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0181 (4) | 0.0218 (4) | 0.0123 (3) | 0.0025 (3) | 0.0008 (3) | −0.0007 (3) |
N1 | 0.0156 (4) | 0.0180 (4) | 0.0141 (4) | 0.0009 (3) | 0.0025 (3) | 0.0006 (3) |
N2 | 0.0152 (4) | 0.0189 (4) | 0.0138 (4) | 0.0011 (3) | 0.0005 (3) | 0.0000 (3) |
C1 | 0.0143 (4) | 0.0174 (4) | 0.0126 (4) | −0.0020 (3) | 0.0021 (3) | 0.0010 (3) |
C2 | 0.0149 (4) | 0.0180 (4) | 0.0164 (5) | −0.0004 (3) | 0.0026 (3) | 0.0014 (4) |
C3 | 0.0183 (5) | 0.0219 (5) | 0.0196 (5) | 0.0025 (4) | 0.0037 (4) | −0.0019 (4) |
C4 | 0.0211 (5) | 0.0272 (5) | 0.0181 (5) | 0.0024 (4) | 0.0030 (4) | −0.0046 (4) |
C5 | 0.0174 (5) | 0.0238 (5) | 0.0137 (4) | 0.0013 (4) | 0.0007 (4) | −0.0014 (4) |
C6 | 0.0142 (4) | 0.0174 (4) | 0.0133 (4) | −0.0003 (3) | 0.0024 (3) | 0.0001 (3) |
C7 | 0.0136 (4) | 0.0175 (4) | 0.0136 (4) | −0.0005 (3) | 0.0019 (3) | 0.0018 (3) |
C8 | 0.0148 (4) | 0.0172 (4) | 0.0163 (5) | −0.0010 (3) | 0.0024 (3) | 0.0008 (3) |
C9 | 0.0157 (4) | 0.0201 (5) | 0.0184 (5) | 0.0001 (4) | 0.0010 (4) | 0.0022 (4) |
C10 | 0.0162 (4) | 0.0194 (5) | 0.0228 (5) | −0.0002 (4) | 0.0037 (4) | 0.0032 (4) |
C11 | 0.0197 (5) | 0.0195 (5) | 0.0216 (5) | 0.0008 (4) | 0.0060 (4) | −0.0005 (4) |
C12 | 0.0201 (5) | 0.0220 (5) | 0.0172 (5) | 0.0007 (4) | 0.0040 (4) | −0.0007 (4) |
C13 | 0.0152 (4) | 0.0174 (4) | 0.0157 (5) | −0.0002 (3) | 0.0027 (3) | 0.0020 (3) |
C14 | 0.0177 (5) | 0.0234 (5) | 0.0192 (5) | 0.0033 (4) | 0.0012 (4) | 0.0023 (4) |
C15 | 0.0167 (6) | 0.0179 (7) | 0.0243 (7) | 0.0024 (5) | 0.0027 (5) | 0.0019 (5) |
C15A | 0.023 (2) | 0.024 (2) | 0.035 (3) | 0.0009 (17) | 0.0110 (19) | −0.0034 (18) |
O1—C1 | 1.3639 (12) | C9—H9A | 0.9300 |
O1—H1O1 | 0.93 (2) | C10—C11 | 1.4100 (16) |
N1—C7 | 1.3291 (13) | C10—C15 | 1.5217 (18) |
N1—C13 | 1.3919 (13) | C10—H10A | 0.9599 |
N2—C7 | 1.3706 (13) | C11—C12 | 1.3902 (15) |
N2—C8 | 1.3842 (14) | C11—C15A | 1.454 (5) |
N2—H1N2 | 0.936 (19) | C11—H11A | 0.9600 |
C1—C2 | 1.4045 (14) | C12—C13 | 1.3996 (15) |
C1—C6 | 1.4124 (14) | C12—H12A | 0.9300 |
C2—C3 | 1.3904 (15) | C14—H14A | 0.9600 |
C2—C14 | 1.4990 (15) | C14—H14B | 0.9600 |
C3—C4 | 1.3951 (16) | C14—H14C | 0.9600 |
C3—H3A | 0.9300 | C15—H10A | 0.5624 |
C4—C5 | 1.3877 (15) | C15—H15A | 0.9600 |
C4—H4A | 0.9300 | C15—H15B | 0.9600 |
C5—C6 | 1.4009 (14) | C15—H15C | 0.9600 |
C5—H5A | 0.9300 | C15A—H11A | 0.5030 |
C6—C7 | 1.4572 (14) | C15A—H15D | 0.9600 |
C8—C9 | 1.3970 (14) | C15A—H15E | 0.9600 |
C8—C13 | 1.4035 (14) | C15A—H15F | 0.9600 |
C9—C10 | 1.3915 (16) | ||
C1—O1—H1O1 | 105.0 (14) | C9—C10—C15 | 120.98 (11) |
C7—N1—C13 | 105.67 (8) | C11—C10—C15 | 118.62 (11) |
C7—N2—C8 | 106.97 (9) | C9—C10—H10A | 119.8 |
C7—N2—H1N2 | 127.1 (12) | C11—C10—H10A | 119.8 |
C8—N2—H1N2 | 125.5 (12) | C12—C11—C10 | 121.86 (10) |
O1—C1—C2 | 117.66 (9) | C12—C11—C15A | 121.4 (2) |
O1—C1—C6 | 121.79 (9) | C10—C11—C15A | 116.6 (2) |
C2—C1—C6 | 120.55 (9) | C12—C11—H11A | 119.1 |
C3—C2—C1 | 118.62 (10) | C10—C11—H11A | 119.0 |
C3—C2—C14 | 121.45 (10) | C11—C12—C13 | 118.11 (10) |
C1—C2—C14 | 119.92 (9) | C11—C12—H12A | 120.9 |
C2—C3—C4 | 121.60 (10) | C13—C12—H12A | 120.9 |
C2—C3—H3A | 119.2 | N1—C13—C12 | 131.12 (10) |
C4—C3—H3A | 119.2 | N1—C13—C8 | 109.24 (9) |
C5—C4—C3 | 119.50 (10) | C12—C13—C8 | 119.63 (10) |
C5—C4—H4A | 120.2 | C2—C14—H14A | 109.5 |
C3—C4—H4A | 120.2 | C2—C14—H14B | 109.5 |
C4—C5—C6 | 120.63 (10) | H14A—C14—H14B | 109.5 |
C4—C5—H5A | 119.7 | C2—C14—H14C | 109.5 |
C6—C5—H5A | 119.7 | H14A—C14—H14C | 109.5 |
C5—C6—C1 | 119.07 (9) | H14B—C14—H14C | 109.5 |
C5—C6—C7 | 121.12 (9) | C10—C15—H15A | 109.5 |
C1—C6—C7 | 119.80 (9) | H10A—C15—H15A | 107.6 |
N1—C7—N2 | 112.23 (9) | C10—C15—H15B | 109.5 |
N1—C7—C6 | 123.58 (9) | H10A—C15—H15B | 111.4 |
N2—C7—C6 | 124.17 (9) | C10—C15—H15C | 109.5 |
N2—C8—C9 | 131.51 (10) | H10A—C15—H15C | 109.4 |
N2—C8—C13 | 105.89 (9) | C11—C15A—H15D | 109.5 |
C9—C8—C13 | 122.58 (10) | C11—C15A—H15E | 109.5 |
C10—C9—C8 | 117.42 (10) | H15D—C15A—H15E | 109.5 |
C10—C9—H9A | 121.3 | C11—C15A—H15F | 109.5 |
C8—C9—H9A | 121.3 | H15D—C15A—H15F | 109.5 |
C9—C10—C11 | 120.40 (10) | H15E—C15A—H15F | 109.5 |
O1—C1—C2—C3 | −178.69 (9) | C1—C6—C7—N2 | −179.91 (9) |
C6—C1—C2—C3 | 1.56 (15) | C7—N2—C8—C9 | 178.20 (11) |
O1—C1—C2—C14 | 0.27 (14) | C7—N2—C8—C13 | −0.17 (11) |
C6—C1—C2—C14 | −179.49 (9) | N2—C8—C9—C10 | −178.36 (11) |
C1—C2—C3—C4 | −0.34 (17) | C13—C8—C9—C10 | −0.22 (16) |
C14—C2—C3—C4 | −179.28 (10) | C8—C9—C10—C11 | −0.31 (16) |
C2—C3—C4—C5 | −0.80 (18) | C8—C9—C10—C15 | 179.22 (11) |
C3—C4—C5—C6 | 0.73 (17) | C9—C10—C11—C12 | 0.42 (17) |
C4—C5—C6—C1 | 0.46 (16) | C15—C10—C11—C12 | −179.13 (11) |
C4—C5—C6—C7 | 179.02 (10) | C9—C10—C11—C15A | −175.2 (2) |
O1—C1—C6—C5 | 178.63 (9) | C15—C10—C11—C15A | 5.2 (3) |
C2—C1—C6—C5 | −1.62 (15) | C10—C11—C12—C13 | 0.03 (17) |
O1—C1—C6—C7 | 0.06 (15) | C15A—C11—C12—C13 | 175.5 (2) |
C2—C1—C6—C7 | 179.81 (9) | C7—N1—C13—C12 | −178.89 (11) |
C13—N1—C7—N2 | −0.43 (12) | C7—N1—C13—C8 | 0.31 (11) |
C13—N1—C7—C6 | 177.88 (9) | C11—C12—C13—N1 | 178.57 (10) |
C8—N2—C7—N1 | 0.39 (12) | C11—C12—C13—C8 | −0.56 (16) |
C8—N2—C7—C6 | −177.91 (9) | N2—C8—C13—N1 | −0.08 (11) |
C5—C6—C7—N1 | −176.56 (10) | C9—C8—C13—N1 | −178.63 (9) |
C1—C6—C7—N1 | 1.98 (15) | N2—C8—C13—C12 | 179.22 (9) |
C5—C6—C7—N2 | 1.55 (16) | C9—C8—C13—C12 | 0.67 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O1i | 0.936 (19) | 2.095 (19) | 2.9916 (12) | 160.1 (18) |
O1—H1O1···N1 | 0.93 (2) | 1.74 (2) | 2.6040 (12) | 153 (2) |
C15—H15C···Cg3ii | 0.96 | 2.66 | 3.5731 (16) | 160 |
C15A—H15F···Cg2iii | 0.96 | 2.96 | 3.780 (4) | 144 |
Symmetry codes: (i) x−1, −y+3/2, z−1/2; (ii) x−1, y, z; (iii) −x+1, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | 0.75C15H14N2O·0.25C15H14N2O |
Mr | 238.28 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 4.9231 (1), 19.8900 (6), 12.3199 (3) |
β (°) | 105.085 (1) |
V (Å3) | 1164.80 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.59 × 0.17 × 0.10 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.951, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 34431, 3703, 3165 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.725 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.131, 1.07 |
No. of reflections | 3703 |
No. of parameters | 184 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.61, −0.20 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H1N2···O1i | 0.936 (19) | 2.095 (19) | 2.9916 (12) | 160.1 (18) |
O1—H1O1···N1 | 0.93 (2) | 1.74 (2) | 2.6040 (12) | 153 (2) |
C15—H15C···Cg3ii | 0.96 | 2.66 | 3.5731 (16) | 160 |
C15A—H15F···Cg2iii | 0.96 | 2.96 | 3.780 (4) | 144 |
Symmetry codes: (i) x−1, −y+3/2, z−1/2; (ii) x−1, y, z; (iii) −x+1, y+1/2, −z+1/2. |
Acknowledgements
The authors thank the Malaysian Government, Ministry of Science, Technology and Innovation (MOSTI) and Universiti Sains Malaysia for the FRGS, RU research grants (PKIMIA/613308, PKIMIA/815002, and PKIMIA/811120) and the University Golden Goose grant No. 1001/PFIZIK/811012. The International University of Africa (Sudan) is acknowledged for providing study leave to NEE.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazoles are regarded as a promising class of bioactive heterocyclic compounds that exhibit a variety of bioactivities displaying antidiabetic (Minoura et al., 2004), antimicrobial, antifungal (Guven et al., 2007; Pawar et al., 2005), antiviral (Tomei et al., 2003); anti-inflammatory (Thakurdesai et al., 2007) and anticancer (Demirayak et al., 2002) properties. As part of our research on screening benzimidazoles for their biological activities, we have previously reported the synthesis and crystal structures of some benzimidazoles (Eltayeb et al., 2007; 2009a,b). In continuation of this research the title compound (I) was synthesized and its crystal structure is reported here.
The asymmetric unit of the title compound (Fig. 1) consists of [2-methyl-6-(6-methyl-1H-benzimidazol-2-yl)phenol] as a major component and [2-methyl-6-(5-methyl-1H-benzimidazol-2-yl)phenol] as a minor component. The refined site-occupancy ratio of the major and the minor components is 0.746 (4)/0.254 (4). The conformation of both components are identical except the benzimidazole methyl group is positionally disordered over two positions on atoms C10 and C11 (Fig. 1). The molecule is essentially planar with the dihedral angle between the benzimidazole and benzene ring being 3.49 (4)°. The benzimidazole ring system (N1/N2/C7–C13) is planar with an rms deviation of 0.008 (1)Å. The imidazole ring (N1/N2/C7–C8/C13) makes the dihedral angles of 1.28 (6) and 3.01 (6)° with the C8–C13 and C1–C6 benzene rings, respectively. An intramolecular O—H···N hydrogen bond (Fig. 1) generates an S(6) ring motif (Bernstein et al., 1995) and helps to maintain the planarity of the molecule. Bond lengths in (I) are in normal ranges (Allen et al., 1987) and comparable with those in related structures (Eltayeb et al., 2007; 2009a, b; Xiao et al., 2009).
The crystal packing of the major component was shown in Fig. 2, the molecules being linked in an antiparallel manner through an N—H···O hydrogen bond into chains along the [2 0 1] direction. These chains are stacked approximately along the a axis (Table 1). C—H···π (Table 1) and π–π interactions were also present with the distance Cg1···Cg2 = 3.6241 (6) Å (symmetry code -1+x, y, z); Cg1, Cg2 and Cg3 are the centroids of the N1/N2/C7–C8/C13, C1–C6 and C8–C13 rings, respectively.