metal-organic compounds
Aqua(2,2′-bipyridine-κ2N,N′)[2-(3-thienyl)malonato-κ2O,O′]zinc(II) dihydrate
aDepartment of Chemistry and Chemical Engineering, Shaanxi Key Laboratory of Chemical Reaction Engineering, Yan'an University, Yan'an 716000, People's Republic of China, and bLanzhou Institute of Biological Products, Lanzhou 730046, People's Republic of China
*Correspondence e-mail: chemfufeng@126.com
In the 7H4O4S)(C10H8N2)(H2O)]·2H2O, the ZnII ion assumes a trigonal–bipyramidal coordination geometry completed by two N atoms from a 2,2′-bipyridine ligand, two O atoms from a 2-(3-thienyl)malonate anion and a water molecule. The S atom of the 2-(3-thienyl)malonate ligand is disordered over two sites with an occupancy ratio of 0.701 (5):0.299 (5). Intermolecular O—H⋯O hydrogen bonding is present in the crystal structure.
of the title compound, [Zn(CRelated literature
For general background to organic heterocycles, see: Lin et al. (2008); Jin et al. (2001). For related thiophenemalonate complexes, see: He et al. (2009); Murray et al. (2008); Huang et al. (2009); Lim et al. (2006). For hydrogen-bonded rings in polymeric complexes, see: Eppel & Bernstein (2009); Etter (1990); Nichol & Clegg (2009).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536809047448/xu2654sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536809047448/xu2654Isup2.hkl
A mixture of Zn(NO3)2.6H2O (0.030 g, 0.1 mmol), 2,2'-bipyridine (0.008 g, 0.05 mmol), 3-thiophenemalonic acid (0.018 g, 0.1 mmol), NaOH (0.008 g, 0.2 mmol) and distilled water(10 ml) was sealed in a 25 ml Teflon-lined stainless autoclave and heated at 413 K for 72 h under autogenous pressure. After cooled at room temperature over 48 h, colorless crystals of the title compound suitable for X-ray analysis were obtained from the reaction mixture by filtration.
All H atoms were positioned geometrically (C—H = 0.93 and O—H = 0.85 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(O). The S1 and C6 atoms of the 3-thiophenemalonate ligand are disordered over two sites, occupancies were refined to 0.701 (5):0.299 (5).
Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The structure of title complex,with the atom-numbering scheme for the asymmetric unit, showing displacementellipsoids at the 50% probability level. |
[Zn(C7H4O4S)(C10H8N2)(H2O)]·2H2O | F(000) = 1888 |
Mr = 459.76 | Dx = 1.580 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 4757 reflections |
a = 15.9978 (10) Å | θ = 2.3–28.3° |
b = 14.5647 (9) Å | µ = 1.42 mm−1 |
c = 16.5889 (10) Å | T = 293 K |
V = 3865.3 (4) Å3 | Prism, colorless |
Z = 8 | 0.15 × 0.10 × 0.06 mm |
Bruker SMART CCD diffractometer | 4752 independent reflections |
Radiation source: fine-focus sealed tube | 3107 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
ϕ and ω scans | θmax = 28.3°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −20→21 |
Tmin = 0.843, Tmax = 0.918 | k = −19→19 |
23919 measured reflections | l = −13→21 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.035 | H-atom parameters constrained |
wR(F2) = 0.094 | w = 1/[σ2(Fo2) + (0.0445P)2 + 0.5447P] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max = 0.013 |
4752 reflections | Δρmax = 0.29 e Å−3 |
273 parameters | Δρmin = −0.39 e Å−3 |
1 restraint | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0056 (3) |
[Zn(C7H4O4S)(C10H8N2)(H2O)]·2H2O | V = 3865.3 (4) Å3 |
Mr = 459.76 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 15.9978 (10) Å | µ = 1.42 mm−1 |
b = 14.5647 (9) Å | T = 293 K |
c = 16.5889 (10) Å | 0.15 × 0.10 × 0.06 mm |
Bruker SMART CCD diffractometer | 4752 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3107 reflections with I > 2σ(I) |
Tmin = 0.843, Tmax = 0.918 | Rint = 0.045 |
23919 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 1 restraint |
wR(F2) = 0.094 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.29 e Å−3 |
4752 reflections | Δρmin = −0.39 e Å−3 |
273 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Zn1 | 0.006504 (15) | 0.702960 (16) | 0.153476 (15) | 0.03795 (11) | |
S1A | 0.1680 (2) | 0.8323 (2) | −0.04031 (12) | 0.0838 (10) | 0.701 (5) |
C6A | 0.1110 (9) | 0.9380 (17) | −0.0371 (9) | 0.086 (5) | 0.701 (5) |
H6AA | 0.0975 | 0.9781 | −0.0788 | 0.103* | 0.701 (5) |
S1B | 0.1113 (9) | 0.9171 (14) | −0.0430 (7) | 0.104 (4) | 0.299 (5) |
C6B | 0.1633 (18) | 0.8181 (18) | −0.0295 (10) | 0.100 (11) | 0.299 (5) |
H6BA | 0.1852 | 0.7779 | −0.0676 | 0.120* | 0.299 (5) |
O1 | 0.11079 (10) | 0.71831 (9) | 0.21860 (10) | 0.0469 (4) | |
O2 | 0.21138 (11) | 0.80238 (11) | 0.27006 (12) | 0.0647 (5) | |
O3 | −0.03265 (9) | 0.82628 (10) | 0.19487 (10) | 0.0453 (4) | |
O4 | −0.00902 (9) | 0.96587 (11) | 0.23639 (12) | 0.0595 (5) | |
O5 | −0.06263 (9) | 0.61837 (11) | 0.21667 (11) | 0.0582 (5) | |
H18 | −0.1147 | 0.6295 | 0.2189 | 0.087* | |
H19 | −0.0547 | 0.5646 | 0.2351 | 0.087* | |
N1 | 0.06793 (11) | 0.61120 (12) | 0.07465 (11) | 0.0416 (4) | |
N2 | −0.05051 (12) | 0.73028 (13) | 0.04201 (13) | 0.0491 (5) | |
C1 | 0.01571 (12) | 0.89209 (14) | 0.20888 (13) | 0.0376 (5) | |
C2 | 0.14652 (14) | 0.79424 (14) | 0.23075 (14) | 0.0406 (5) | |
C3 | 0.10954 (12) | 0.88032 (14) | 0.19092 (13) | 0.0375 (5) | |
H3 | 0.1390 | 0.9340 | 0.2123 | 0.045* | |
C4 | 0.12234 (12) | 0.87804 (15) | 0.10066 (14) | 0.0426 (5) | |
C5 | 0.09144 (18) | 0.9444 (2) | 0.04875 (19) | 0.0722 (8) | |
H5 | 0.0695 | 1.0000 | 0.0670 | 0.087* | |
C7 | 0.16463 (17) | 0.81237 (18) | 0.05892 (17) | 0.0561 (7) | |
H7 | 0.1929 | 0.7608 | 0.0830 | 0.067* | |
C8 | 0.12881 (14) | 0.55364 (16) | 0.09565 (16) | 0.0515 (6) | |
H8 | 0.1428 | 0.5489 | 0.1499 | 0.062* | |
C9 | 0.17174 (16) | 0.50113 (19) | 0.04116 (19) | 0.0639 (7) | |
H9 | 0.2145 | 0.4623 | 0.0578 | 0.077* | |
C10 | 0.14997 (19) | 0.5074 (2) | −0.0387 (2) | 0.0747 (9) | |
H10 | 0.1778 | 0.4723 | −0.0771 | 0.090* | |
C11 | 0.08674 (18) | 0.5659 (2) | −0.06165 (17) | 0.0659 (7) | |
H11 | 0.0713 | 0.5706 | −0.1156 | 0.079* | |
C12 | 0.04632 (14) | 0.61766 (16) | −0.00342 (14) | 0.0455 (6) | |
C13 | −0.02145 (15) | 0.68297 (17) | −0.02135 (15) | 0.0478 (6) | |
C14 | −0.05387 (19) | 0.6973 (2) | −0.09774 (17) | 0.0738 (9) | |
H14 | −0.0336 | 0.6638 | −0.1413 | 0.089* | |
C15 | −0.1155 (2) | 0.7605 (3) | −0.1090 (2) | 0.0865 (10) | |
H15 | −0.1378 | 0.7699 | −0.1601 | 0.104* | |
C16 | −0.1442 (2) | 0.8096 (2) | −0.0452 (2) | 0.0820 (10) | |
H16 | −0.1855 | 0.8539 | −0.0520 | 0.098* | |
C17 | −0.11076 (18) | 0.79227 (18) | 0.0303 (2) | 0.0716 (9) | |
H17 | −0.1310 | 0.8249 | 0.0744 | 0.086* | |
O6 | 0.30803 (11) | 0.96079 (13) | 0.28178 (15) | 0.0902 (7) | |
H20 | 0.2790 | 0.9120 | 0.2835 | 0.135* | |
H21 | 0.3574 | 0.9424 | 0.2919 | 0.135* | |
O7 | 0.27699 (11) | 0.62083 (13) | 0.27671 (16) | 0.0973 (8) | |
H22 | 0.2451 | 0.6675 | 0.2774 | 0.146* | |
H23 | 0.2433 | 0.5767 | 0.2851 | 0.146* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.03884 (16) | 0.03100 (15) | 0.04402 (17) | −0.00086 (10) | −0.00143 (11) | −0.00347 (11) |
S1A | 0.0931 (16) | 0.102 (2) | 0.0563 (9) | −0.0365 (14) | 0.0254 (9) | −0.0082 (10) |
C6A | 0.053 (5) | 0.109 (11) | 0.096 (9) | 0.016 (5) | 0.005 (5) | 0.048 (7) |
S1B | 0.113 (6) | 0.124 (8) | 0.076 (4) | −0.004 (4) | 0.021 (3) | 0.031 (3) |
C6B | 0.078 (12) | 0.041 (8) | 0.18 (3) | −0.002 (8) | 0.059 (12) | 0.034 (10) |
O1 | 0.0499 (9) | 0.0316 (8) | 0.0592 (10) | 0.0009 (7) | −0.0149 (8) | 0.0001 (7) |
O2 | 0.0510 (10) | 0.0531 (11) | 0.0899 (14) | −0.0023 (8) | −0.0338 (10) | 0.0044 (9) |
O3 | 0.0337 (8) | 0.0366 (9) | 0.0655 (11) | −0.0017 (7) | 0.0039 (8) | −0.0123 (8) |
O4 | 0.0452 (9) | 0.0363 (9) | 0.0968 (14) | 0.0014 (7) | 0.0116 (9) | −0.0224 (9) |
O5 | 0.0435 (9) | 0.0411 (9) | 0.0899 (13) | 0.0012 (7) | 0.0131 (9) | 0.0187 (9) |
N1 | 0.0401 (10) | 0.0402 (10) | 0.0446 (11) | −0.0004 (8) | 0.0010 (8) | −0.0022 (9) |
N2 | 0.0494 (12) | 0.0404 (11) | 0.0574 (13) | 0.0018 (9) | −0.0142 (10) | 0.0001 (10) |
C1 | 0.0366 (11) | 0.0317 (11) | 0.0444 (13) | 0.0000 (9) | 0.0015 (9) | −0.0017 (10) |
C2 | 0.0382 (12) | 0.0396 (12) | 0.0442 (13) | 0.0046 (10) | −0.0028 (10) | −0.0005 (10) |
C3 | 0.0322 (11) | 0.0307 (11) | 0.0497 (13) | −0.0019 (9) | −0.0042 (10) | −0.0026 (10) |
C4 | 0.0318 (11) | 0.0440 (13) | 0.0518 (14) | −0.0058 (9) | 0.0033 (10) | 0.0081 (11) |
C5 | 0.0660 (17) | 0.077 (2) | 0.073 (2) | 0.0156 (15) | 0.0104 (15) | 0.0262 (16) |
C7 | 0.0586 (16) | 0.0536 (16) | 0.0560 (17) | −0.0071 (12) | 0.0175 (13) | −0.0004 (13) |
C8 | 0.0479 (13) | 0.0487 (14) | 0.0579 (16) | 0.0061 (11) | −0.0070 (12) | −0.0047 (12) |
C9 | 0.0522 (15) | 0.0572 (17) | 0.082 (2) | 0.0089 (12) | 0.0002 (15) | −0.0139 (15) |
C10 | 0.0691 (19) | 0.080 (2) | 0.075 (2) | 0.0102 (16) | 0.0159 (17) | −0.0264 (17) |
C11 | 0.0748 (18) | 0.078 (2) | 0.0450 (15) | −0.0004 (16) | 0.0044 (13) | −0.0155 (14) |
C12 | 0.0455 (13) | 0.0467 (14) | 0.0441 (14) | −0.0095 (11) | 0.0024 (11) | −0.0032 (11) |
C13 | 0.0495 (13) | 0.0500 (15) | 0.0439 (14) | −0.0112 (11) | −0.0053 (11) | 0.0067 (11) |
C14 | 0.0690 (19) | 0.104 (2) | 0.0487 (17) | −0.0068 (17) | −0.0068 (15) | 0.0143 (16) |
C15 | 0.081 (2) | 0.101 (3) | 0.077 (2) | −0.011 (2) | −0.0295 (19) | 0.034 (2) |
C16 | 0.070 (2) | 0.063 (2) | 0.113 (3) | 0.0004 (15) | −0.042 (2) | 0.0220 (19) |
C17 | 0.0668 (18) | 0.0556 (17) | 0.092 (2) | 0.0114 (14) | −0.0271 (17) | −0.0064 (15) |
O6 | 0.0429 (11) | 0.0615 (12) | 0.166 (2) | 0.0055 (9) | −0.0057 (12) | −0.0011 (13) |
O7 | 0.0408 (10) | 0.0598 (13) | 0.191 (2) | 0.0105 (9) | −0.0077 (13) | 0.0120 (14) |
Zn1—O1 | 2.0001 (15) | C3—H3 | 0.9800 |
Zn1—O3 | 2.0224 (15) | C4—C7 | 1.361 (3) |
Zn1—O5 | 1.9596 (15) | C4—C5 | 1.386 (3) |
Zn1—N1 | 2.1123 (18) | C5—H5 | 0.9317 |
Zn1—N2 | 2.100 (2) | C7—H7 | 0.9630 |
S1A—C7 | 1.672 (3) | C8—C9 | 1.369 (3) |
S1A—C6A | 1.79 (2) | C8—H8 | 0.9300 |
C6A—C5 | 1.461 (16) | C9—C10 | 1.373 (4) |
C6A—H6AA | 0.9300 | C9—H9 | 0.9300 |
S1B—C6B | 1.68 (3) | C10—C11 | 1.376 (4) |
S1B—C5 | 1.606 (14) | C10—H10 | 0.9300 |
C6B—C7 | 1.469 (17) | C11—C12 | 1.385 (3) |
C6B—H6BA | 0.9300 | C11—H11 | 0.9300 |
O1—C2 | 1.261 (2) | C12—C13 | 1.473 (3) |
O2—C2 | 1.231 (3) | C13—C14 | 1.385 (3) |
O3—C1 | 1.254 (2) | C14—C15 | 1.361 (4) |
O4—C1 | 1.233 (2) | C14—H14 | 0.9300 |
O5—H18 | 0.8499 | C15—C16 | 1.358 (5) |
O5—H19 | 0.8500 | C15—H15 | 0.9300 |
N1—C8 | 1.331 (3) | C16—C17 | 1.385 (4) |
N1—C12 | 1.344 (3) | C16—H16 | 0.9300 |
N2—C17 | 1.335 (3) | C17—H17 | 0.9300 |
N2—C13 | 1.340 (3) | O6—H20 | 0.8499 |
C1—C3 | 1.540 (3) | O6—H21 | 0.8501 |
C2—C3 | 1.536 (3) | O7—H22 | 0.8500 |
C3—C4 | 1.512 (3) | O7—H23 | 0.8501 |
O5—Zn1—O1 | 104.60 (7) | C4—C5—C6A | 119.0 (9) |
O5—Zn1—O3 | 101.65 (6) | C4—C5—S1B | 110.2 (6) |
O1—Zn1—O3 | 88.61 (6) | C6A—C5—S1B | 10.7 (17) |
O5—Zn1—N2 | 110.18 (7) | C4—C5—H5 | 122.6 |
O1—Zn1—N2 | 144.76 (7) | C6A—C5—H5 | 116.9 |
O3—Zn1—N2 | 89.78 (7) | S1B—C5—H5 | 126.7 |
O5—Zn1—N1 | 101.30 (7) | C4—C7—S1A | 113.3 (2) |
O1—Zn1—N1 | 90.98 (7) | C4—C7—C6B | 117.4 (11) |
O3—Zn1—N1 | 156.38 (7) | S1A—C7—C6B | 7.3 (11) |
N2—Zn1—N1 | 77.11 (7) | C4—C7—H7 | 124.8 |
C7—S1A—C6A | 95.9 (5) | S1A—C7—H7 | 121.8 |
C5—C6A—S1A | 101.1 (10) | C6B—C7—H7 | 117.7 |
C5—C6A—H6AA | 129.4 | N1—C8—C9 | 123.1 (2) |
S1A—C6A—H6AA | 129.4 | N1—C8—H8 | 118.5 |
C6B—S1B—C5 | 100.6 (10) | C9—C8—H8 | 118.5 |
S1B—C6B—C7 | 100.9 (15) | C8—C9—C10 | 118.2 (3) |
S1B—C6B—H6BA | 129.5 | C8—C9—H9 | 120.9 |
C7—C6B—H6BA | 129.5 | C10—C9—H9 | 120.9 |
C2—O1—Zn1 | 124.22 (14) | C9—C10—C11 | 119.7 (3) |
C1—O3—Zn1 | 123.42 (13) | C9—C10—H10 | 120.2 |
Zn1—O5—H18 | 117.2 | C11—C10—H10 | 120.2 |
Zn1—O5—H19 | 133.4 | C10—C11—C12 | 119.1 (3) |
H18—O5—H19 | 107.9 | C10—C11—H11 | 120.4 |
C8—N1—C12 | 119.0 (2) | C12—C11—H11 | 120.4 |
C8—N1—Zn1 | 125.22 (16) | N1—C12—C11 | 120.9 (2) |
C12—N1—Zn1 | 115.63 (15) | N1—C12—C13 | 115.4 (2) |
C17—N2—C13 | 119.0 (2) | C11—C12—C13 | 123.7 (2) |
C17—N2—Zn1 | 124.7 (2) | N2—C13—C14 | 120.7 (2) |
C13—N2—Zn1 | 116.26 (16) | N2—C13—C12 | 115.4 (2) |
O4—C1—O3 | 122.49 (19) | C14—C13—C12 | 123.9 (3) |
O4—C1—C3 | 118.79 (18) | C15—C14—C13 | 119.9 (3) |
O3—C1—C3 | 118.73 (18) | C15—C14—H14 | 120.0 |
O2—C2—O1 | 123.4 (2) | C13—C14—H14 | 120.0 |
O2—C2—C3 | 118.29 (19) | C16—C15—C14 | 119.6 (3) |
O1—C2—C3 | 118.20 (19) | C16—C15—H15 | 120.2 |
C4—C3—C2 | 110.86 (17) | C14—C15—H15 | 120.2 |
C4—C3—C1 | 109.04 (17) | C15—C16—C17 | 118.6 (3) |
C2—C3—C1 | 112.53 (17) | C15—C16—H16 | 120.7 |
C4—C3—H3 | 108.1 | C17—C16—H16 | 120.7 |
C2—C3—H3 | 108.1 | N2—C17—C16 | 122.2 (3) |
C1—C3—H3 | 108.1 | N2—C17—H17 | 118.9 |
C7—C4—C5 | 110.6 (2) | C16—C17—H17 | 118.9 |
C7—C4—C3 | 125.9 (2) | H20—O6—H21 | 103.8 |
C5—C4—C3 | 123.5 (2) | H22—O7—H23 | 102.8 |
C7—S1A—C6A—C5 | −2.2 (10) | C7—C4—C5—C6A | −3.1 (10) |
C5—S1B—C6B—C7 | −1.9 (17) | C3—C4—C5—C6A | 177.0 (9) |
O5—Zn1—O1—C2 | −136.45 (18) | C7—C4—C5—S1B | 3.7 (7) |
O3—Zn1—O1—C2 | −34.78 (18) | C3—C4—C5—S1B | −176.2 (7) |
N2—Zn1—O1—C2 | 52.9 (2) | S1A—C6A—C5—C4 | 3.4 (13) |
N1—Zn1—O1—C2 | 121.60 (18) | S1A—C6A—C5—S1B | −33 (5) |
O5—Zn1—O3—C1 | 139.19 (18) | C6B—S1B—C5—C4 | −0.9 (14) |
O1—Zn1—O3—C1 | 34.56 (18) | C6B—S1B—C5—C6A | 145 (6) |
N2—Zn1—O3—C1 | −110.24 (19) | C5—C4—C7—S1A | 1.1 (3) |
N1—Zn1—O3—C1 | −54.7 (3) | C3—C4—C7—S1A | −179.0 (2) |
O5—Zn1—N1—C8 | −72.87 (18) | C5—C4—C7—C6B | −5.5 (12) |
O1—Zn1—N1—C8 | 32.23 (18) | C3—C4—C7—C6B | 174.4 (12) |
O3—Zn1—N1—C8 | 121.0 (2) | C6A—S1A—C7—C4 | 0.8 (7) |
N2—Zn1—N1—C8 | 178.76 (19) | C6A—S1A—C7—C6B | 127 (10) |
O5—Zn1—N1—C12 | 111.89 (16) | S1B—C6B—C7—C4 | 4.5 (18) |
O1—Zn1—N1—C12 | −143.01 (15) | S1B—C6B—C7—S1A | −52 (9) |
O3—Zn1—N1—C12 | −54.3 (2) | C12—N1—C8—C9 | 1.0 (3) |
N2—Zn1—N1—C12 | 3.51 (15) | Zn1—N1—C8—C9 | −174.14 (18) |
O5—Zn1—N2—C17 | 82.5 (2) | N1—C8—C9—C10 | −0.9 (4) |
O1—Zn1—N2—C17 | −107.2 (2) | C8—C9—C10—C11 | 0.4 (4) |
O3—Zn1—N2—C17 | −19.9 (2) | C9—C10—C11—C12 | 0.2 (4) |
N1—Zn1—N2—C17 | 179.9 (2) | C8—N1—C12—C11 | −0.4 (3) |
O5—Zn1—N2—C13 | −99.53 (17) | Zn1—N1—C12—C11 | 175.18 (18) |
O1—Zn1—N2—C13 | 70.9 (2) | C8—N1—C12—C13 | −179.9 (2) |
O3—Zn1—N2—C13 | 158.13 (17) | Zn1—N1—C12—C13 | −4.4 (2) |
N1—Zn1—N2—C13 | −2.06 (16) | C10—C11—C12—N1 | −0.2 (4) |
Zn1—O3—C1—O4 | −177.78 (18) | C10—C11—C12—C13 | 179.4 (2) |
Zn1—O3—C1—C3 | 2.3 (3) | C17—N2—C13—C14 | −0.7 (4) |
Zn1—O1—C2—O2 | −178.94 (18) | Zn1—N2—C13—C14 | −178.78 (19) |
Zn1—O1—C2—C3 | −2.1 (3) | C17—N2—C13—C12 | 178.6 (2) |
O2—C2—C3—C4 | 107.2 (2) | Zn1—N2—C13—C12 | 0.5 (3) |
O1—C2—C3—C4 | −69.8 (2) | N1—C12—C13—N2 | 2.6 (3) |
O2—C2—C3—C1 | −130.3 (2) | C11—C12—C13—N2 | −176.9 (2) |
O1—C2—C3—C1 | 52.6 (3) | N1—C12—C13—C14 | −178.2 (2) |
O4—C1—C3—C4 | −109.2 (2) | C11—C12—C13—C14 | 2.3 (4) |
O3—C1—C3—C4 | 70.7 (2) | N2—C13—C14—C15 | 0.5 (4) |
O4—C1—C3—C2 | 127.4 (2) | C12—C13—C14—C15 | −178.7 (3) |
O3—C1—C3—C2 | −52.7 (3) | C13—C14—C15—C16 | 0.6 (5) |
C2—C3—C4—C7 | −3.5 (3) | C14—C15—C16—C17 | −1.4 (5) |
C1—C3—C4—C7 | −127.9 (2) | C13—N2—C17—C16 | −0.2 (4) |
C2—C3—C4—C5 | 176.4 (2) | Zn1—N2—C17—C16 | 177.8 (2) |
C1—C3—C4—C5 | 52.0 (3) | C15—C16—C17—N2 | 1.2 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H18···O7i | 0.85 | 1.74 | 2.568 (2) | 165 |
O5—H19···O4ii | 0.85 | 1.83 | 2.618 (2) | 155 |
O6—H20···O2 | 0.85 | 1.94 | 2.784 (2) | 172 |
O6—H21···O4iii | 0.85 | 2.22 | 2.943 (2) | 144 |
O6—H21···O3iii | 0.85 | 2.45 | 3.238 (2) | 154 |
O7—H22···O2 | 0.85 | 2.04 | 2.847 (3) | 158 |
O7—H22···O1 | 0.85 | 2.47 | 3.165 (2) | 139 |
O7—H23···O6iv | 0.85 | 1.88 | 2.700 (3) | 162 |
Symmetry codes: (i) x−1/2, y, −z+1/2; (ii) −x, y−1/2, −z+1/2; (iii) x+1/2, y, −z+1/2; (iv) −x+1/2, y−1/2, z. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C7H4O4S)(C10H8N2)(H2O)]·2H2O |
Mr | 459.76 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 293 |
a, b, c (Å) | 15.9978 (10), 14.5647 (9), 16.5889 (10) |
V (Å3) | 3865.3 (4) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 1.42 |
Crystal size (mm) | 0.15 × 0.10 × 0.06 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.843, 0.918 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 23919, 4752, 3107 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.666 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.094, 1.01 |
No. of reflections | 4752 |
No. of parameters | 273 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.39 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXTL (Sheldrick, 2008).
Zn1—O1 | 2.0001 (15) | Zn1—N1 | 2.1123 (18) |
Zn1—O3 | 2.0224 (15) | Zn1—N2 | 2.100 (2) |
Zn1—O5 | 1.9596 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H18···O7i | 0.85 | 1.74 | 2.568 (2) | 164.8 |
O5—H19···O4ii | 0.85 | 1.83 | 2.618 (2) | 154.5 |
O6—H20···O2 | 0.85 | 1.94 | 2.784 (2) | 171.5 |
O6—H21···O4iii | 0.85 | 2.22 | 2.943 (2) | 143.6 |
O6—H21···O3iii | 0.85 | 2.45 | 3.238 (2) | 154.4 |
O7—H22···O2 | 0.85 | 2.04 | 2.847 (3) | 158.0 |
O7—H22···O1 | 0.85 | 2.47 | 3.165 (2) | 139.1 |
O7—H23···O6iv | 0.85 | 1.88 | 2.700 (3) | 162.1 |
Symmetry codes: (i) x−1/2, y, −z+1/2; (ii) −x, y−1/2, −z+1/2; (iii) x+1/2, y, −z+1/2; (iv) −x+1/2, y−1/2, z. |
Acknowledgements
This work was supported financially by the Natural Science Foundation of Shaanxi Provinces of China (SJ08B11).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The nature of organic heterocycles are special enough to attract a lot of scientific researches (Lin et al., 2008; Jin et al., 2001). Because of the big radius of the S atom, its lone pair of electrons can be more easily delocalized with in the heterocycle, and the ligand exhibits good charge-transfer ability (He et al., 2009). However, its reaction mechanism is rather complicated to study, a small quantity of literatures about thiophenemalonic are reported, with thiophenemalonic acid researched even less (Murray et al., 2008; Huang et al., 2009; Lim et al., 2006). In this paper, we report the hydrothermal synthesis and structure of a new compound incorporating the thiophene-containing ligand3-thiophenecarboxylate with two kinds of hydrogen bond rings (Nichol et al., 2009; Etter, 1990; Eppel et al., 2009).
The molecular structure of the title complex is shown in Fig.1. The coordination geometry around Zn2+ ion is five-coordinated, with two N atoms from 2,2'-bipyridine ligand (N1, N2), two O atom from 3-thiophenecarboxylate ligand (O1,O3), and a coordinated water(O5). The equatorial positions are occupied by N2, O1 and O5, while N1, O3 are in axial positions, so the local coordination environment of Zn(II) can be described as a distorted trigonal bipyramidal environment (Table 1). The S1 and C6 atoms of the 3-thiophenemalonate ligand are disordered over two sites with refined occupancies of 0.701 (5) and 0.299 (5). The units are interconnected by two kinds of O–H···O hydrogen bonds rings (R33 (12), R43(12)) to form a two-dimensional supramolecular network, in which the lattice water molecule acts as both hydrogen-bond donor and acceptor (Table 2). These hydrogen bonds rings contributes to the additional stability of the structure.