organic compounds
1-(3-Chlorobenzyloxy)urea
aState Key Laboratory of Food Science and Technology, Nanchang University, Nanchang 330047, People's Republic of China, bDepartment of Pharmacy, Medical College of Nanchang University, Nanchang 330006, People's Republic of China, cDepartment of Pharmacy, Shangrao Branch of Jiangxi Medical College, Shangrao 334000, People's Republic of China, and dSino-German Joint Research Institute of Nanchang University, Nanchang 330006, People's Republic of China
*Correspondence e-mail: cmxlf2008@163.com
The 8H9ClN2O2, contains four independent molecules. The dihedral angles between the urea N—(C=O)—N planes and the benzene rings are 83.3 (3), 87.8 (1), 89.1 (1) and 17.5 (2)° in the four molecules. Extensive N—H⋯O hydrogen bonding is present in the crystal structure.
of the of the title compound, CRelated literature
For general background to the design and synthesis of hydroxyurea derivatives and their in vitro antitumor activity, see: Mai et al. (2009). For related structures, see: Armagan et al. (1976); Nielsen et al. (1993); Berman & Kim (1967); Howard et al. (1967); Larsen & Jerslev (1966); Thiessen et al. (1978); Yoshitaka et al. (1993).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S160053680904553X/xu2661sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053680904553X/xu2661Isup2.hkl
The title compound was synthesized by hydroxyurea (0.026 mol) with 3-chlorobenzyl chloride (0.034 mol) in methanol (80 ml) in the presence of potassium hydroxide (0.034 mol). After refluxing for 13 h, solvent was removed under reduced pressure at 308 K. The resulting crude solid was filtered and washed in trichloromethane, then recrystallized in acetone and trichloromethane solution (5:2), filtered and dried. Colorless platelet single crystals of the title compound were recrystallized from the mixed solvent acetone and n-hexane (5:10).
H atoms were placed in calculated positions with N—H = 0.90 (imino), 0.86 Å (amino), C—H = 0.93 (aromatic) and 0.97 Å (methylene), and refined in riding mode with Uiso(H) = 1.2Ueq(C,N).
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Molecular structure of the title compound showing the atom labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. The unit cell diagram showing intermolecular hydrogen bonding as dashed lines |
C8H9ClN2O2 | Z = 8 |
Mr = 200.62 | F(000) = 832 |
Triclinic, P1 | Dx = 1.415 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.830 (1) Å | Cell parameters from 1978 reflections |
b = 13.9410 (14) Å | θ = 2.2–22.6° |
c = 14.2750 (15) Å | µ = 0.37 mm−1 |
α = 69.672 (1)° | T = 298 K |
β = 75.828 (2)° | Platelet, colourless |
γ = 70.388 (1)° | 0.43 × 0.40 × 0.05 mm |
V = 1883.6 (3) Å3 |
Bruker APEXII CCD area-detector diffractometer | 6533 independent reflections |
Radiation source: fine-focus sealed tube | 3124 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→11 |
Tmin = 0.856, Tmax = 0.982 | k = −16→16 |
9908 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.094 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0205P)2] where P = (Fo2 + 2Fc2)/3 |
6533 reflections | (Δ/σ)max = 0.001 |
469 parameters | Δρmax = 0.23 e Å−3 |
0 restraints | Δρmin = −0.24 e Å−3 |
C8H9ClN2O2 | γ = 70.388 (1)° |
Mr = 200.62 | V = 1883.6 (3) Å3 |
Triclinic, P1 | Z = 8 |
a = 10.830 (1) Å | Mo Kα radiation |
b = 13.9410 (14) Å | µ = 0.37 mm−1 |
c = 14.2750 (15) Å | T = 298 K |
α = 69.672 (1)° | 0.43 × 0.40 × 0.05 mm |
β = 75.828 (2)° |
Bruker APEXII CCD area-detector diffractometer | 6533 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3124 reflections with I > 2σ(I) |
Tmin = 0.856, Tmax = 0.982 | Rint = 0.029 |
9908 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.094 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.23 e Å−3 |
6533 reflections | Δρmin = −0.24 e Å−3 |
469 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 1.11832 (10) | 0.31531 (8) | −0.02808 (6) | 0.0839 (3) | |
Cl2 | 0.25832 (11) | 0.58558 (9) | −0.04798 (7) | 0.0998 (4) | |
Cl3 | 0.39222 (11) | 0.83726 (9) | −0.04386 (7) | 0.1020 (4) | |
Cl4 | 0.16163 (12) | 1.13164 (10) | 0.84040 (10) | 0.1271 (5) | |
N1 | 0.8146 (2) | 0.36994 (18) | 0.39732 (16) | 0.0401 (6) | |
H1 | 0.8418 | 0.3029 | 0.4370 | 0.048* | |
N2 | 0.6676 (2) | 0.51825 (17) | 0.44071 (16) | 0.0419 (6) | |
H2A | 0.5900 | 0.5522 | 0.4631 | 0.050* | |
H2B | 0.7301 | 0.5491 | 0.4177 | 0.050* | |
N3 | 0.0506 (2) | 0.61462 (18) | 0.39981 (16) | 0.0380 (6) | |
H3 | 0.0757 | 0.5489 | 0.4424 | 0.046* | |
N4 | −0.0889 (2) | 0.76897 (17) | 0.43587 (16) | 0.0453 (7) | |
H4A | −0.1647 | 0.8054 | 0.4583 | 0.054* | |
H4B | −0.0251 | 0.7980 | 0.4089 | 0.054* | |
N5 | 0.2948 (2) | 0.86095 (18) | 0.39097 (17) | 0.0438 (6) | |
H5 | 0.3203 | 0.7948 | 0.4327 | 0.053* | |
N6 | 0.1619 (2) | 1.01583 (18) | 0.42966 (17) | 0.0529 (7) | |
H6A | 0.0882 | 1.0524 | 0.4549 | 0.063* | |
H6B | 0.2252 | 1.0448 | 0.3991 | 0.063* | |
N7 | 0.4342 (2) | 0.89042 (18) | 0.59283 (16) | 0.0422 (6) | |
H7 | 0.4119 | 0.9574 | 0.5520 | 0.051* | |
N8 | 0.5745 (2) | 0.73892 (17) | 0.55203 (16) | 0.0447 (6) | |
H8A | 0.6513 | 0.7025 | 0.5309 | 0.054* | |
H8B | 0.5093 | 0.7111 | 0.5735 | 0.054* | |
O1 | 0.60499 (19) | 0.36862 (15) | 0.47386 (15) | 0.0501 (6) | |
O2 | 0.91190 (18) | 0.42284 (15) | 0.38500 (13) | 0.0421 (5) | |
O3 | −0.15777 (19) | 0.62023 (14) | 0.48081 (14) | 0.0462 (5) | |
O4 | 0.15349 (18) | 0.66423 (15) | 0.38002 (14) | 0.0440 (5) | |
O5 | 0.09142 (19) | 0.86693 (15) | 0.48084 (15) | 0.0524 (6) | |
O6 | 0.4015 (2) | 0.90763 (15) | 0.36655 (15) | 0.0510 (6) | |
O7 | 0.64654 (19) | 0.88364 (14) | 0.52150 (14) | 0.0469 (5) | |
O8 | 0.33178 (18) | 0.84381 (15) | 0.60348 (14) | 0.0458 (5) | |
C1 | 0.6909 (3) | 0.4182 (2) | 0.4417 (2) | 0.0379 (7) | |
C2 | 0.9543 (3) | 0.4670 (2) | 0.2794 (2) | 0.0463 (8) | |
H2C | 0.9940 | 0.5227 | 0.2714 | 0.056* | |
H2D | 0.8774 | 0.4992 | 0.2444 | 0.056* | |
C3 | 1.0527 (3) | 0.3856 (2) | 0.2309 (2) | 0.0400 (8) | |
C4 | 1.0418 (3) | 0.3863 (2) | 0.1359 (2) | 0.0473 (8) | |
H4 | 0.9715 | 0.4348 | 0.1032 | 0.057* | |
C5 | 1.1353 (3) | 0.3151 (3) | 0.0903 (2) | 0.0489 (8) | |
C6 | 1.2408 (3) | 0.2433 (3) | 0.1353 (2) | 0.0573 (9) | |
H6 | 1.3038 | 0.1964 | 0.1028 | 0.069* | |
C7 | 1.2522 (3) | 0.2418 (3) | 0.2306 (3) | 0.0619 (10) | |
H7A | 1.3230 | 0.1931 | 0.2627 | 0.074* | |
C8 | 1.1592 (3) | 0.3119 (3) | 0.2776 (2) | 0.0551 (9) | |
H8 | 1.1675 | 0.3100 | 0.3416 | 0.066* | |
C9 | −0.0704 (3) | 0.6681 (2) | 0.4428 (2) | 0.0373 (7) | |
C10 | 0.1852 (3) | 0.7051 (2) | 0.2732 (2) | 0.0506 (9) | |
H10A | 0.2443 | 0.7490 | 0.2591 | 0.061* | |
H10B | 0.1045 | 0.7503 | 0.2456 | 0.061* | |
C11 | 0.2494 (3) | 0.6202 (3) | 0.2204 (2) | 0.0462 (8) | |
C12 | 0.2222 (3) | 0.6366 (3) | 0.1247 (2) | 0.0552 (9) | |
H12 | 0.1590 | 0.6975 | 0.0957 | 0.066* | |
C13 | 0.2892 (4) | 0.5626 (3) | 0.0729 (2) | 0.0578 (9) | |
C14 | 0.3784 (4) | 0.4728 (3) | 0.1150 (3) | 0.0694 (11) | |
H14 | 0.4233 | 0.4234 | 0.0795 | 0.083* | |
C15 | 0.4031 (4) | 0.4544 (3) | 0.2107 (3) | 0.0804 (12) | |
H15 | 0.4632 | 0.3915 | 0.2403 | 0.096* | |
C16 | 0.3399 (3) | 0.5278 (3) | 0.2632 (2) | 0.0659 (10) | |
H16 | 0.3582 | 0.5151 | 0.3275 | 0.079* | |
C17 | 0.1778 (3) | 0.9153 (3) | 0.4379 (2) | 0.0424 (8) | |
C18 | 0.4308 (3) | 0.9459 (3) | 0.2589 (2) | 0.0649 (10) | |
H18A | 0.5039 | 0.9773 | 0.2420 | 0.078* | |
H18B | 0.3544 | 1.0016 | 0.2333 | 0.078* | |
C19 | 0.4666 (3) | 0.8607 (3) | 0.2068 (2) | 0.0498 (9) | |
C20 | 0.4215 (3) | 0.8854 (3) | 0.1150 (3) | 0.0608 (10) | |
H20 | 0.3710 | 0.9537 | 0.0858 | 0.073* | |
C21 | 0.4533 (3) | 0.8067 (3) | 0.0688 (2) | 0.0625 (10) | |
C22 | 0.5279 (3) | 0.7067 (3) | 0.1085 (3) | 0.0665 (10) | |
H22 | 0.5489 | 0.6552 | 0.0754 | 0.080* | |
C23 | 0.5723 (3) | 0.6827 (3) | 0.1992 (3) | 0.0687 (10) | |
H23 | 0.6225 | 0.6141 | 0.2278 | 0.082* | |
C24 | 0.5427 (3) | 0.7592 (3) | 0.2471 (2) | 0.0575 (9) | |
H24 | 0.5744 | 0.7424 | 0.3074 | 0.069* | |
C25 | 0.5569 (3) | 0.8378 (2) | 0.5515 (2) | 0.0364 (7) | |
C26 | 0.2837 (3) | 0.8033 (2) | 0.7081 (2) | 0.0504 (9) | |
H26A | 0.3582 | 0.7727 | 0.7456 | 0.061* | |
H26B | 0.2461 | 0.7465 | 0.7157 | 0.061* | |
C27 | 0.1814 (3) | 0.8842 (2) | 0.7541 (2) | 0.0443 (8) | |
C28 | 0.2123 (3) | 0.9650 (3) | 0.7696 (2) | 0.0560 (9) | |
H28 | 0.2968 | 0.9742 | 0.7459 | 0.067* | |
C29 | 0.1197 (4) | 1.0319 (3) | 0.8198 (3) | 0.0605 (10) | |
C30 | −0.0046 (4) | 1.0205 (3) | 0.8561 (3) | 0.0815 (12) | |
H30 | −0.0658 | 1.0643 | 0.8926 | 0.098* | |
C31 | −0.0373 (4) | 0.9426 (3) | 0.8373 (4) | 0.1146 (18) | |
H31 | −0.1230 | 0.9356 | 0.8587 | 0.137* | |
C32 | 0.0543 (4) | 0.8753 (3) | 0.7876 (3) | 0.0877 (13) | |
H32 | 0.0304 | 0.8226 | 0.7763 | 0.105* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.1008 (8) | 0.0997 (8) | 0.0604 (6) | −0.0235 (7) | −0.0021 (6) | −0.0446 (6) |
Cl2 | 0.0901 (8) | 0.1568 (11) | 0.0720 (7) | −0.0397 (8) | −0.0086 (6) | −0.0533 (7) |
Cl3 | 0.1091 (9) | 0.1371 (11) | 0.0636 (6) | −0.0405 (8) | −0.0252 (6) | −0.0189 (6) |
Cl4 | 0.1133 (10) | 0.1276 (11) | 0.1915 (13) | −0.0182 (8) | −0.0241 (10) | −0.1208 (10) |
N1 | 0.0363 (16) | 0.0381 (16) | 0.0505 (15) | −0.0135 (14) | 0.0008 (13) | −0.0199 (13) |
N2 | 0.0341 (15) | 0.0312 (16) | 0.0625 (16) | −0.0105 (13) | 0.0005 (13) | −0.0198 (13) |
N3 | 0.0380 (16) | 0.0337 (15) | 0.0433 (15) | −0.0127 (13) | −0.0003 (13) | −0.0134 (12) |
N4 | 0.0397 (16) | 0.0333 (17) | 0.0641 (17) | −0.0126 (13) | 0.0039 (13) | −0.0209 (13) |
N5 | 0.0432 (17) | 0.0370 (17) | 0.0543 (16) | −0.0154 (14) | −0.0014 (14) | −0.0168 (13) |
N6 | 0.0454 (17) | 0.0355 (17) | 0.0766 (19) | −0.0135 (14) | 0.0034 (15) | −0.0211 (14) |
N7 | 0.0389 (16) | 0.0341 (16) | 0.0532 (16) | −0.0117 (14) | −0.0013 (14) | −0.0144 (13) |
N8 | 0.0382 (16) | 0.0316 (16) | 0.0665 (17) | −0.0097 (13) | −0.0005 (13) | −0.0218 (13) |
O1 | 0.0376 (13) | 0.0378 (13) | 0.0820 (16) | −0.0174 (11) | 0.0014 (12) | −0.0260 (11) |
O2 | 0.0374 (12) | 0.0513 (14) | 0.0452 (12) | −0.0174 (11) | 0.0006 (10) | −0.0226 (10) |
O3 | 0.0372 (13) | 0.0399 (13) | 0.0690 (14) | −0.0186 (11) | 0.0037 (11) | −0.0250 (11) |
O4 | 0.0387 (13) | 0.0486 (14) | 0.0505 (13) | −0.0196 (11) | 0.0025 (11) | −0.0201 (11) |
O5 | 0.0414 (14) | 0.0408 (14) | 0.0827 (16) | −0.0187 (12) | 0.0033 (12) | −0.0283 (12) |
O6 | 0.0466 (14) | 0.0544 (15) | 0.0578 (14) | −0.0230 (12) | 0.0024 (11) | −0.0215 (11) |
O7 | 0.0359 (13) | 0.0333 (13) | 0.0743 (14) | −0.0120 (11) | −0.0013 (11) | −0.0211 (11) |
O8 | 0.0391 (13) | 0.0521 (14) | 0.0522 (13) | −0.0186 (11) | 0.0001 (11) | −0.0212 (11) |
C1 | 0.040 (2) | 0.034 (2) | 0.0448 (19) | −0.0074 (17) | −0.0077 (17) | −0.0187 (16) |
C2 | 0.051 (2) | 0.046 (2) | 0.0417 (19) | −0.0195 (18) | 0.0019 (17) | −0.0133 (16) |
C3 | 0.042 (2) | 0.039 (2) | 0.0374 (18) | −0.0149 (17) | 0.0032 (16) | −0.0115 (15) |
C4 | 0.047 (2) | 0.043 (2) | 0.050 (2) | −0.0110 (17) | −0.0046 (17) | −0.0145 (17) |
C5 | 0.053 (2) | 0.051 (2) | 0.045 (2) | −0.0189 (19) | 0.0003 (18) | −0.0179 (17) |
C6 | 0.061 (3) | 0.047 (2) | 0.057 (2) | −0.012 (2) | 0.011 (2) | −0.0221 (18) |
C7 | 0.056 (2) | 0.055 (2) | 0.058 (2) | 0.0005 (19) | −0.004 (2) | −0.0146 (19) |
C8 | 0.054 (2) | 0.060 (3) | 0.047 (2) | −0.012 (2) | −0.0039 (19) | −0.0160 (18) |
C9 | 0.037 (2) | 0.037 (2) | 0.0447 (19) | −0.0107 (17) | −0.0061 (16) | −0.0193 (16) |
C10 | 0.051 (2) | 0.042 (2) | 0.050 (2) | −0.0157 (17) | 0.0065 (18) | −0.0099 (17) |
C11 | 0.045 (2) | 0.044 (2) | 0.043 (2) | −0.0166 (18) | 0.0088 (17) | −0.0103 (17) |
C12 | 0.046 (2) | 0.053 (2) | 0.059 (2) | −0.0114 (18) | 0.0005 (19) | −0.0160 (19) |
C13 | 0.055 (2) | 0.064 (3) | 0.050 (2) | −0.022 (2) | 0.0023 (19) | −0.014 (2) |
C14 | 0.086 (3) | 0.058 (3) | 0.056 (2) | −0.022 (2) | 0.021 (2) | −0.025 (2) |
C15 | 0.096 (3) | 0.047 (3) | 0.056 (3) | 0.014 (2) | 0.005 (2) | −0.008 (2) |
C16 | 0.076 (3) | 0.053 (3) | 0.045 (2) | 0.004 (2) | −0.002 (2) | −0.0105 (19) |
C17 | 0.041 (2) | 0.038 (2) | 0.053 (2) | −0.0084 (18) | −0.0080 (18) | −0.0211 (17) |
C18 | 0.075 (3) | 0.052 (2) | 0.062 (2) | −0.027 (2) | 0.011 (2) | −0.013 (2) |
C19 | 0.051 (2) | 0.046 (2) | 0.047 (2) | −0.0181 (19) | 0.0096 (18) | −0.0128 (18) |
C20 | 0.054 (2) | 0.053 (2) | 0.057 (2) | −0.0084 (19) | 0.001 (2) | −0.006 (2) |
C21 | 0.053 (2) | 0.080 (3) | 0.048 (2) | −0.021 (2) | 0.0020 (19) | −0.015 (2) |
C22 | 0.062 (3) | 0.076 (3) | 0.060 (2) | −0.014 (2) | 0.006 (2) | −0.034 (2) |
C23 | 0.066 (3) | 0.060 (3) | 0.063 (2) | 0.004 (2) | −0.005 (2) | −0.020 (2) |
C24 | 0.057 (2) | 0.057 (3) | 0.052 (2) | −0.009 (2) | −0.0074 (19) | −0.015 (2) |
C25 | 0.036 (2) | 0.030 (2) | 0.0425 (18) | −0.0054 (17) | −0.0067 (16) | −0.0129 (15) |
C26 | 0.054 (2) | 0.041 (2) | 0.054 (2) | −0.0180 (18) | 0.0034 (18) | −0.0124 (17) |
C27 | 0.039 (2) | 0.043 (2) | 0.0460 (19) | −0.0100 (17) | −0.0013 (16) | −0.0103 (16) |
C28 | 0.043 (2) | 0.069 (3) | 0.063 (2) | −0.015 (2) | −0.0005 (18) | −0.033 (2) |
C29 | 0.067 (3) | 0.056 (3) | 0.060 (2) | −0.009 (2) | −0.011 (2) | −0.0252 (19) |
C30 | 0.078 (3) | 0.057 (3) | 0.083 (3) | −0.002 (2) | 0.022 (2) | −0.026 (2) |
C31 | 0.061 (3) | 0.078 (3) | 0.195 (5) | −0.027 (3) | 0.048 (3) | −0.067 (3) |
C32 | 0.060 (3) | 0.062 (3) | 0.142 (4) | −0.025 (2) | 0.024 (3) | −0.049 (3) |
Cl1—C5 | 1.742 (3) | C6—C7 | 1.388 (4) |
Cl2—C13 | 1.737 (3) | C6—H6 | 0.9300 |
Cl3—C21 | 1.750 (3) | C7—C8 | 1.372 (4) |
Cl4—C29 | 1.732 (3) | C7—H7A | 0.9300 |
N1—C1 | 1.387 (3) | C8—H8 | 0.9300 |
N1—O2 | 1.424 (2) | C10—C11 | 1.504 (4) |
N1—H1 | 0.9000 | C10—H10A | 0.9700 |
N2—C1 | 1.327 (3) | C10—H10B | 0.9700 |
N2—H2A | 0.8600 | C11—C16 | 1.376 (4) |
N2—H2B | 0.8600 | C11—C12 | 1.392 (4) |
N3—C9 | 1.385 (3) | C12—C13 | 1.380 (4) |
N3—O4 | 1.424 (2) | C12—H12 | 0.9300 |
N3—H3 | 0.9000 | C13—C14 | 1.346 (4) |
N4—C9 | 1.323 (3) | C14—C15 | 1.376 (4) |
N4—H4A | 0.8600 | C14—H14 | 0.9300 |
N4—H4B | 0.8600 | C15—C16 | 1.375 (4) |
N5—C17 | 1.386 (3) | C15—H15 | 0.9300 |
N5—O6 | 1.426 (3) | C16—H16 | 0.9300 |
N5—H5 | 0.9000 | C18—C19 | 1.510 (4) |
N6—C17 | 1.320 (3) | C18—H18A | 0.9700 |
N6—H6A | 0.8600 | C18—H18B | 0.9700 |
N6—H6B | 0.8600 | C19—C24 | 1.377 (4) |
N7—C25 | 1.384 (3) | C19—C20 | 1.400 (4) |
N7—O8 | 1.417 (2) | C20—C21 | 1.378 (4) |
N7—H7 | 0.9000 | C20—H20 | 0.9300 |
N8—C25 | 1.324 (3) | C21—C22 | 1.355 (4) |
N8—H8A | 0.8600 | C22—C23 | 1.383 (4) |
N8—H8B | 0.8600 | C22—H22 | 0.9300 |
O1—C1 | 1.247 (3) | C23—C24 | 1.371 (4) |
O2—C2 | 1.439 (3) | C23—H23 | 0.9300 |
O3—C9 | 1.247 (3) | C24—H24 | 0.9300 |
O4—C10 | 1.428 (3) | C26—C27 | 1.500 (4) |
O5—C17 | 1.249 (3) | C26—H26A | 0.9700 |
O6—C18 | 1.432 (3) | C26—H26B | 0.9700 |
O7—C25 | 1.248 (3) | C27—C32 | 1.374 (4) |
O8—C26 | 1.432 (3) | C27—C28 | 1.377 (4) |
C2—C3 | 1.507 (4) | C28—C29 | 1.369 (4) |
C2—H2C | 0.9700 | C28—H28 | 0.9300 |
C2—H2D | 0.9700 | C29—C30 | 1.360 (4) |
C3—C4 | 1.387 (4) | C30—C31 | 1.372 (5) |
C3—C8 | 1.391 (4) | C30—H30 | 0.9300 |
C4—C5 | 1.374 (4) | C31—C32 | 1.364 (5) |
C4—H4 | 0.9300 | C31—H31 | 0.9300 |
C5—C6 | 1.366 (4) | C32—H32 | 0.9300 |
C1—N1—O2 | 113.2 (2) | C13—C12—H12 | 120.0 |
C1—N1—H1 | 108.3 | C11—C12—H12 | 120.0 |
O2—N1—H1 | 108.2 | C14—C13—C12 | 120.6 (3) |
C1—N2—H2A | 120.0 | C14—C13—Cl2 | 119.7 (3) |
C1—N2—H2B | 120.0 | C12—C13—Cl2 | 119.7 (3) |
H2A—N2—H2B | 120.0 | C13—C14—C15 | 119.8 (3) |
C9—N3—O4 | 114.3 (2) | C13—C14—H14 | 120.1 |
C9—N3—H3 | 108.1 | C15—C14—H14 | 120.1 |
O4—N3—H3 | 108.1 | C16—C15—C14 | 120.8 (3) |
C9—N4—H4A | 120.0 | C16—C15—H15 | 119.6 |
C9—N4—H4B | 120.0 | C14—C15—H15 | 119.6 |
H4A—N4—H4B | 120.0 | C15—C16—C11 | 119.8 (3) |
C17—N5—O6 | 114.9 (2) | C15—C16—H16 | 120.1 |
C17—N5—H5 | 108.0 | C11—C16—H16 | 120.1 |
O6—N5—H5 | 107.9 | O5—C17—N6 | 124.3 (3) |
C17—N6—H6A | 120.0 | O5—C17—N5 | 117.3 (3) |
C17—N6—H6B | 120.0 | N6—C17—N5 | 118.2 (3) |
H6A—N6—H6B | 120.0 | O6—C18—C19 | 113.6 (2) |
C25—N7—O8 | 114.0 (2) | O6—C18—H18A | 108.8 |
C25—N7—H7 | 107.9 | C19—C18—H18A | 108.8 |
O8—N7—H7 | 107.9 | O6—C18—H18B | 108.8 |
C25—N8—H8A | 120.0 | C19—C18—H18B | 108.8 |
C25—N8—H8B | 120.0 | H18A—C18—H18B | 107.7 |
H8A—N8—H8B | 120.0 | C24—C19—C20 | 119.1 (3) |
N1—O2—C2 | 110.04 (18) | C24—C19—C18 | 121.7 (3) |
N3—O4—C10 | 108.3 (2) | C20—C19—C18 | 119.2 (3) |
N5—O6—C18 | 108.6 (2) | C21—C20—C19 | 118.7 (3) |
N7—O8—C26 | 110.3 (2) | C21—C20—H20 | 120.7 |
O1—C1—N2 | 123.4 (3) | C19—C20—H20 | 120.7 |
O1—C1—N1 | 118.8 (3) | C22—C21—C20 | 122.2 (3) |
N2—C1—N1 | 117.6 (3) | C22—C21—Cl3 | 119.4 (3) |
O2—C2—C3 | 113.2 (2) | C20—C21—Cl3 | 118.4 (3) |
O2—C2—H2C | 108.9 | C21—C22—C23 | 118.9 (3) |
C3—C2—H2C | 108.9 | C21—C22—H22 | 120.6 |
O2—C2—H2D | 108.9 | C23—C22—H22 | 120.6 |
C3—C2—H2D | 108.9 | C24—C23—C22 | 120.5 (3) |
H2C—C2—H2D | 107.7 | C24—C23—H23 | 119.8 |
C4—C3—C8 | 118.5 (3) | C22—C23—H23 | 119.8 |
C4—C3—C2 | 120.1 (3) | C23—C24—C19 | 120.6 (3) |
C8—C3—C2 | 121.4 (3) | C23—C24—H24 | 119.7 |
C5—C4—C3 | 119.8 (3) | C19—C24—H24 | 119.7 |
C5—C4—H4 | 120.1 | O7—C25—N8 | 123.8 (3) |
C3—C4—H4 | 120.1 | O7—C25—N7 | 118.3 (3) |
C6—C5—C4 | 121.9 (3) | N8—C25—N7 | 117.8 (3) |
C6—C5—Cl1 | 118.9 (3) | O8—C26—C27 | 114.8 (2) |
C4—C5—Cl1 | 119.2 (3) | O8—C26—H26A | 108.6 |
C5—C6—C7 | 118.7 (3) | C27—C26—H26A | 108.6 |
C5—C6—H6 | 120.7 | O8—C26—H26B | 108.6 |
C7—C6—H6 | 120.7 | C27—C26—H26B | 108.6 |
C8—C7—C6 | 120.2 (3) | H26A—C26—H26B | 107.5 |
C8—C7—H7A | 119.9 | C32—C27—C28 | 117.9 (3) |
C6—C7—H7A | 119.9 | C32—C27—C26 | 120.1 (3) |
C7—C8—C3 | 121.0 (3) | C28—C27—C26 | 121.9 (3) |
C7—C8—H8 | 119.5 | C29—C28—C27 | 120.5 (3) |
C3—C8—H8 | 119.5 | C29—C28—H28 | 119.8 |
O3—C9—N4 | 123.9 (3) | C27—C28—H28 | 119.8 |
O3—C9—N3 | 118.1 (3) | C30—C29—C28 | 121.4 (3) |
N4—C9—N3 | 117.9 (3) | C30—C29—Cl4 | 118.9 (3) |
O4—C10—C11 | 113.7 (2) | C28—C29—Cl4 | 119.7 (3) |
O4—C10—H10A | 108.8 | C29—C30—C31 | 118.2 (4) |
C11—C10—H10A | 108.8 | C29—C30—H30 | 120.9 |
O4—C10—H10B | 108.8 | C31—C30—H30 | 120.9 |
C11—C10—H10B | 108.8 | C32—C31—C30 | 120.8 (4) |
H10A—C10—H10B | 107.7 | C32—C31—H31 | 119.6 |
C16—C11—C12 | 119.0 (3) | C30—C31—H31 | 119.6 |
C16—C11—C10 | 120.9 (3) | C31—C32—C27 | 121.1 (4) |
C12—C11—C10 | 120.0 (3) | C31—C32—H32 | 119.5 |
C13—C12—C11 | 120.0 (3) | C27—C32—H32 | 119.5 |
C1—N1—O2—C2 | −114.4 (2) | C12—C11—C16—C15 | 0.9 (5) |
C9—N3—O4—C10 | −110.6 (3) | C10—C11—C16—C15 | −176.0 (3) |
C17—N5—O6—C18 | −112.7 (3) | O6—N5—C17—O5 | −164.4 (2) |
C25—N7—O8—C26 | 114.6 (3) | O6—N5—C17—N6 | 19.2 (4) |
O2—N1—C1—O1 | −166.4 (2) | N5—O6—C18—C19 | −58.1 (3) |
O2—N1—C1—N2 | 18.4 (3) | O6—C18—C19—C24 | −38.7 (4) |
N1—O2—C2—C3 | −79.1 (3) | O6—C18—C19—C20 | 141.4 (3) |
O2—C2—C3—C4 | 137.8 (3) | C24—C19—C20—C21 | 0.9 (5) |
O2—C2—C3—C8 | −45.1 (4) | C18—C19—C20—C21 | −179.2 (3) |
C8—C3—C4—C5 | −0.1 (4) | C19—C20—C21—C22 | −0.8 (5) |
C2—C3—C4—C5 | 177.0 (3) | C19—C20—C21—Cl3 | 178.1 (2) |
C3—C4—C5—C6 | −0.7 (5) | C20—C21—C22—C23 | 0.8 (5) |
C3—C4—C5—Cl1 | 178.8 (2) | Cl3—C21—C22—C23 | −178.0 (3) |
C4—C5—C6—C7 | 0.9 (5) | C21—C22—C23—C24 | −0.9 (5) |
Cl1—C5—C6—C7 | −178.5 (2) | C22—C23—C24—C19 | 1.1 (5) |
C5—C6—C7—C8 | −0.5 (5) | C20—C19—C24—C23 | −1.1 (5) |
C6—C7—C8—C3 | −0.3 (5) | C18—C19—C24—C23 | 179.0 (3) |
C4—C3—C8—C7 | 0.5 (5) | O8—N7—C25—O7 | 166.5 (2) |
C2—C3—C8—C7 | −176.5 (3) | O8—N7—C25—N8 | −17.8 (3) |
O4—N3—C9—O3 | −165.9 (2) | N7—O8—C26—C27 | 83.7 (3) |
O4—N3—C9—N4 | 17.9 (3) | O8—C26—C27—C32 | 114.8 (3) |
N3—O4—C10—C11 | −67.9 (3) | O8—C26—C27—C28 | −69.1 (4) |
O4—C10—C11—C16 | −38.4 (4) | C32—C27—C28—C29 | 2.0 (5) |
O4—C10—C11—C12 | 144.7 (3) | C26—C27—C28—C29 | −174.2 (3) |
C16—C11—C12—C13 | −2.2 (5) | C27—C28—C29—C30 | 0.3 (5) |
C10—C11—C12—C13 | 174.7 (3) | C27—C28—C29—Cl4 | 178.9 (2) |
C11—C12—C13—C14 | 1.7 (5) | C28—C29—C30—C31 | −2.8 (6) |
C11—C12—C13—Cl2 | −178.1 (2) | Cl4—C29—C30—C31 | 178.6 (3) |
C12—C13—C14—C15 | 0.2 (5) | C29—C30—C31—C32 | 2.9 (7) |
Cl2—C13—C14—C15 | 180.0 (3) | C30—C31—C32—C27 | −0.7 (7) |
C13—C14—C15—C16 | −1.6 (6) | C28—C27—C32—C31 | −1.8 (6) |
C14—C15—C16—C11 | 1.0 (6) | C26—C27—C32—C31 | 174.4 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O5i | 0.90 | 2.20 | 3.096 (3) | 173 |
N2—H2A···O1i | 0.86 | 2.16 | 3.023 (3) | 177 |
N2—H2B···O3ii | 0.86 | 2.29 | 2.971 (3) | 136 |
N4—H4A···O7iii | 0.86 | 2.11 | 2.971 (3) | 176 |
N4—H4B···O5 | 0.86 | 2.39 | 3.017 (3) | 130 |
N5—H5···O1i | 0.90 | 2.19 | 3.090 (3) | 176 |
N6—H6A···O5iv | 0.86 | 2.07 | 2.925 (3) | 177 |
N7—H7···O7v | 0.90 | 2.04 | 2.937 (3) | 171 |
N8—H8A···O3ii | 0.86 | 2.09 | 2.947 (3) | 177 |
N8—H8B···O1i | 0.86 | 2.25 | 2.976 (3) | 142 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x+1, y, z; (iii) x−1, y, z; (iv) −x, −y+2, −z+1; (v) −x+1, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C8H9ClN2O2 |
Mr | 200.62 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 298 |
a, b, c (Å) | 10.830 (1), 13.9410 (14), 14.2750 (15) |
α, β, γ (°) | 69.672 (1), 75.828 (2), 70.388 (1) |
V (Å3) | 1883.6 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.37 |
Crystal size (mm) | 0.43 × 0.40 × 0.05 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.856, 0.982 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9908, 6533, 3124 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.094, 1.01 |
No. of reflections | 6533 |
No. of parameters | 469 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.23, −0.24 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O5i | 0.90 | 2.20 | 3.096 (3) | 173 |
N2—H2A···O1i | 0.86 | 2.16 | 3.023 (3) | 177 |
N2—H2B···O3ii | 0.86 | 2.29 | 2.971 (3) | 136 |
N4—H4A···O7iii | 0.86 | 2.11 | 2.971 (3) | 176 |
N4—H4B···O5 | 0.86 | 2.39 | 3.017 (3) | 130 |
N5—H5···O1i | 0.90 | 2.19 | 3.090 (3) | 176 |
N6—H6A···O5iv | 0.86 | 2.07 | 2.925 (3) | 177 |
N7—H7···O7v | 0.90 | 2.04 | 2.937 (3) | 171 |
N8—H8A···O3ii | 0.86 | 2.09 | 2.947 (3) | 177 |
N8—H8B···O1i | 0.86 | 2.25 | 2.976 (3) | 142 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x+1, y, z; (iii) x−1, y, z; (iv) −x, −y+2, −z+1; (v) −x+1, −y+2, −z+1. |
Acknowledgements
The authors gratefully acknowledge the financial support of this study by the National Key S&T Special Project of China: Grand New Drug R&D (NO. 2009ZX09103–087) and the program of the Nanchang Department of Science and Technology, China (No. 2008368).
References
Armagan, N., Richards, J. P. G. & Uraz, A. A. (1976). Acta Cryst. B32, 1042–1047. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Berman, H. & Kim, S. H. (1967). Acta Cryst. 23, 180–181. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Bruker (2004). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Howard, W., Shields, P. J., Hamrick, J. & Welby, R. (1967). J. Chem. Phys. 46, 2510–2514. Google Scholar
Larsen, I. K. & Jerslev, B. (1966). Acta Chem. Scand. 20, 983–991. CrossRef Web of Science Google Scholar
Mai, X., Xia, H.-Y., Cao, Y.-S., Lu, X.-S. & Fang, X.-N. (2009). Acta Cryst. E65, o442. Web of Science CSD CrossRef IUCr Journals Google Scholar
Nielsen, B. B., Frydenvang, K. & Larsen, I. K. (1993). Acta Cryst. C49, 1018–1022. CSD CrossRef CAS Web of Science IUCr Journals Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Thiessen, W. E., Levy, H. A. & Flaig, B. D. (1978). Acta Cryst. B34, 2495–2502. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Yoshitaka, S., James, L. S., Alan, J. H., Adam, H. L., Timothy, J. K., Warren, H. L. D., Hope, W. & Earl, F. K. (1993). J. Med. Chem. 36, 3580–3594. PubMed Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Hydroxyurea (HU) is a substance used in cancer chemotherapy for many years, but it has several disadvantages, such as short half-life, extremely polar nature, the rapid development of resistance and so on. To obtain more potent compound, we have designed and synthesized HU derivatives, and evaluated their in vitro antitumor activities in our previous work (Mai et al., 2009). Here we report the crystal structure of the title compound, 3-chlorobenzyloxyurea.
The structure of 3-chlorobenzyloxyurea is shown in Fig. 1. The conformations of the N–O and C=O bonds are opposite to each other, similar to that observed in N-hydroxyurea (Howard et al., 1967; Thiessen et al., 1978; Armagan et al., 1976; Berman et al., 1967; Larsen & Jerslev, 1966), 1-hydroxy-1-methylurea, 1-hydroxy-3-methylurea (Nielsen et al., 1993), N-(6-phenoxy-2H-chromen-3-ylmethyl)-N-hydroxyurea (Yoshitaka et al., 1993) and 1-(2-fluorobenzyl)-1-(2-fluorobenzyloxy) urea (Mai et al., 2009). The bond parameters are similar to 1-(2-fluorobenzyl)-1-(2-fluorobenzyloxy)urea (Mai et al., 2009). The asymmetric unit of the title compound contains four independent molecules. The dihedral angles between the urea N-(C=O)–N planes and benzene ring are 83.3 (3)°, 87.8 (1)°, 89.1 (1)° and 17.5 (2)° for the four molecules. The N–O bonds are twisted out of the urea N–(C=O)–N planes by 18.4 (3)°, 17.9 (3)°, 19.2 (4)° and -17.8 (3)°, respectively in the four molecules. In the crystal structure, molecules are linked through intermolecular N–H···O hydrogen bonds, forming the zigzig chain.