metal-organic compounds
catena-Poly[[aquasodium(I)]-μ-[2,2′-(disulfanediyl)bis(pyridine N-oxide)]-μ-(pyridine-2-thiolato 1-oxide)]
aDepartment of Chemistry, Popes College, Sawyerpuram 628 251, Tamilnadu, India, bDepartment of Physics, Sethupathy Government Arts College, Ramanathapuram 623 502, Tamilnadu, India, cDepartment of Physics, Popes College, Sawyerpuram 628 251, Tamilnadu, India, dDepartment of Chemistry, T.D.M.N.S. College, T. Kallikulam, Tamilnadu, India, and eInstitut für Organische Chemie, Universität Mainz, Duesbergweg 10-14, 55099 Mainz, Germany
*Correspondence e-mail: b_ravidurai@yahoo.com
There are two monomeric units in the 5H4NOS)(C10H8N2O2S2)(H2O)]n. The NaI ions are six coordinated by four O atoms, one S atom and one water molecule, forming a slightly distorted octahedral geometry. An intramolecular O—H⋯O hydrogen bond stabilizes the conformation of the molecule. The crystal packing is consolidated by intermolecular O—H⋯O, O—H⋯N and O—H⋯S hydrogen bonds, π–π interactions [with centroid–centroid distances of 3.587 (2) Å] together with weak C—H⋯π interactions. The molecules are linked into polymeric chains along the b-axis direction.
of the polymeric title compound, [Na(CRelated literature
For the biological activity of N-oxides and their derivatives, see: Lobana & Bhatia (1989); Symons et al. (1985). For their involvement in DNA strand scission under physiological conditions, see: Katsuyuki et al. (1991); Bovin et al. (1992). Pyridine N-oxides bearing a sulfur group in position two display significant antimicrobial activity, see: Leonard et al. (1955). For related structures, see: Jebas et al. (2005); Ravindran et al. (2008).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b); molecular graphics: SHELXTL (Sheldrick, 2008b); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810000073/bt5158sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810000073/bt5158Isup2.hkl
A mixture of Sodium salt of 1-hydroxypyidine-2-thione (0.298 2mmol), ethanol (10 ml)and sodium ethoxide (10ml) was heated at 333 K with stirring for 30 min. After two days again Sodium salt of 1-hydroxypyidine-2-thione(0.149,1mmol)was added. The solution was again heated at 333 K with stirring for 30 min. The mixture was then kept aside for slow evaporation. After a week colourless crystals were formed.
After checking their presence in the Fourier map, all the aromatic hydrogen atoms were fixed on the calculated positions and allowed to ride on their parent atoms with the C—H = 0.95 Å. The water hydrogen atoms were located from the Fourier map and allowed to refine freely with the distances O—H = 0.86 to 0.92Å (water) with Uiso(C) in the range of 1.2Uequ(C) and 1.5Uequ(O) water. The crystal was an
The indicates the fractional contribution of the twin components.N-oxides and their derivatives show a broad spectrum of biological activity such as antifungal, antimicrobial and antibacterial activities (Lobana & Bhatia, 1989; Symons et al., 1985). These compounds are also found to be involved in DNA strand scission under physiological conditions (Katsuyuki et al., 1991; Bovin et al., 1992). Pyridine N-oxides bearing a sulfur group in position two display significant antimicrobial activity (Leonard et al., 1955). In view of the importance of N-oxides, we have previously reported the crystal structures of N-oxide derivatives (Jebas et al., 2005; Ravindran et al., 2008). As an extension of our work on N-oxide derivatives, we report here the
of the title compound (I).In the
of (I)(Fig 1), the NaI ion is six coordinated by four oxygen atoms, two from 1-oxypyridine-2-thiolato and two from 2,2-thiobis(pyridine N-oxide) ligands, and one sulfur atom from 1-oxypyridine-2-thiolato ligand. The pyridyl rings are essentially planar with the maximum deviation from planarity of -0.034 (5) Å for atom C10. The N–O bond lengths are in good agreement with the mean value of 1.304 (15) Å reported in the literature for pyridine N-oxides.Intramolecular O—H···O hydrogen bonding influence the conformation of the molecule. The crystal packing (Fig 2) is consolidated by intermolecular O—H···O, O—H···N and O—H···S hydrogen bonding together with intramolecular S···O= 2.587 (3) to 3.069 (3) Å; N···S=2.686 (4) to 2.700 (5) Å; S···Na=3.807 (2) Å, intermolecular S···Oi=3.065 (3) Å, O···Oi=2.784 (3), O···Oii=2.798 (3) Å, intramolecular S···O =2.587 (3)to 3.069 (3) Å; O···O = 2.784 (3) to 2.798 (3) Å; S···Na=3.807 (2) Å and N···S=2.686 (4) to 2.700 (5) Å short contacts [symmetry code: (i) 1/2+X,1-Y,Z (ii) -1/2+X, 1-Y, Z]. π—π interactions with cg1-cg4iii=3.587 (2)Å (Where Cg1 is N1/C2—C6; Cg2 is N25/C26—C30) [symmetry code: (iii) X, -1+Y, Z] together with weak C—H··· π interactions. The molecules are linked into polymeric chains along the b-direction.
For the biological activity of N-oxides and their derivatives, see: Lobana & Bhatia (1989); Symons et al. (1985). For their involvement in DNA strand scission under physiological conditions, see: Katsuyuki et al. (1991); Bovin et al. (1992). Pyridine N-oxides bearing a sulfur group in position two display significant antimicrobial activity, see: Leonard et al. (1955). For related structures: Jebas et al. (2005); Ravindran et al. (2008).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b); molecular graphics: SHELXTL (Sheldrick, 2008b); software used to prepare material for publication: SHELXTL (Sheldrick, 2008b) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids and the atom numbering scheme. | |
Fig. 2. The crystal packing of the title compound, showing polymeric chains along the b-direction. |
[Na(C5H4NOS)(C10H8N2O2S2)(H2O)] | F(000) = 1728 |
Mr = 838.92 | Dx = 1.600 Mg m−3 |
Orthorhombic, Pca21 | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: P 2c -2ac | Cell parameters from 6853 reflections |
a = 24.829 (2) Å | θ = 2.7–27.9° |
b = 7.3290 (7) Å | µ = 0.48 mm−1 |
c = 19.1378 (17) Å | T = 173 K |
V = 3482.5 (5) Å3 | Block, colorless |
Z = 4 | 0.54 × 0.19 × 0.14 mm |
Bruker SMART APEXII CCD diffractometer | 8403 independent reflections |
Radiation source: sealed Tube | 6205 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.077 |
CCD scan | θmax = 28.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a) | h = −32→30 |
Tmin = 0.782, Tmax = 0.936 | k = −9→9 |
38861 measured reflections | l = −25→25 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: calc |
R[F2 > 2σ(F2)] = 0.037 | H-atom parameters constrained |
wR(F2) = 0.074 | w = 1/[σ2(Fo2) + (0.0277P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.93 | (Δ/σ)max < 0.001 |
8403 reflections | Δρmax = 0.28 e Å−3 |
469 parameters | Δρmin = −0.23 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 4068 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.47 (6) |
[Na(C5H4NOS)(C10H8N2O2S2)(H2O)] | V = 3482.5 (5) Å3 |
Mr = 838.92 | Z = 4 |
Orthorhombic, Pca21 | Mo Kα radiation |
a = 24.829 (2) Å | µ = 0.48 mm−1 |
b = 7.3290 (7) Å | T = 173 K |
c = 19.1378 (17) Å | 0.54 × 0.19 × 0.14 mm |
Bruker SMART APEXII CCD diffractometer | 8403 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a) | 6205 reflections with I > 2σ(I) |
Tmin = 0.782, Tmax = 0.936 | Rint = 0.077 |
38861 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | H-atom parameters constrained |
wR(F2) = 0.074 | Δρmax = 0.28 e Å−3 |
S = 0.93 | Δρmin = −0.23 e Å−3 |
8403 reflections | Absolute structure: Flack (1983), 4068 Friedel pairs |
469 parameters | Absolute structure parameter: 0.47 (6) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Na1 | 0.62174 (8) | 0.7233 (3) | 0.43117 (11) | 0.0209 (4) | |
Na2 | 0.63035 (8) | 0.2253 (3) | 0.42791 (11) | 0.0205 (4) | |
N1 | 0.55812 (13) | 0.4551 (4) | 0.55069 (17) | 0.0169 (6) | |
C2 | 0.5074 (3) | 0.5199 (5) | 0.5651 (4) | 0.0192 (12) | |
C3 | 0.4871 (3) | 0.5177 (5) | 0.6318 (4) | 0.0254 (14) | |
H3 | 0.4518 | 0.5612 | 0.6413 | 0.031* | |
C4 | 0.51902 (17) | 0.4511 (5) | 0.6844 (2) | 0.0284 (8) | |
H4 | 0.5059 | 0.4482 | 0.7310 | 0.034* | |
C5 | 0.57028 (13) | 0.3880 (5) | 0.66984 (17) | 0.0261 (8) | |
H5 | 0.5923 | 0.3419 | 0.7064 | 0.031* | |
C6 | 0.58936 (13) | 0.3919 (4) | 0.60254 (17) | 0.0233 (7) | |
H6 | 0.6247 | 0.3498 | 0.5927 | 0.028* | |
O7 | 0.57443 (13) | 0.4583 (4) | 0.48528 (17) | 0.0221 (6) | |
S8 | 0.47870 (3) | 0.60118 (11) | 0.48539 (5) | 0.02044 (17) | |
S9 | 0.40763 (3) | 0.71334 (11) | 0.51954 (5) | 0.02278 (18) | |
C10 | 0.3632 (2) | 0.5278 (6) | 0.5114 (3) | 0.0194 (10) | |
N11 | 0.31067 (11) | 0.5830 (4) | 0.50875 (14) | 0.0217 (6) | |
C12 | 0.27083 (19) | 0.4613 (6) | 0.4983 (3) | 0.0257 (10) | |
H12 | 0.2348 | 0.5032 | 0.4931 | 0.031* | |
C13 | 0.28145 (15) | 0.2766 (6) | 0.49496 (19) | 0.0247 (9) | |
H13 | 0.2530 | 0.1922 | 0.4873 | 0.030* | |
C14 | 0.33365 (14) | 0.2158 (5) | 0.50285 (17) | 0.0245 (8) | |
H14 | 0.3414 | 0.0889 | 0.5026 | 0.029* | |
C15 | 0.37491 (14) | 0.3433 (5) | 0.51114 (17) | 0.0208 (7) | |
H15 | 0.4111 | 0.3034 | 0.5166 | 0.025* | |
O16 | 0.30158 (11) | 0.7595 (4) | 0.51612 (17) | 0.0334 (7) | |
N17 | 0.68938 (18) | 0.4697 (4) | 0.3143 (2) | 0.0169 (8) | |
C18 | 0.65984 (13) | 0.3867 (4) | 0.26226 (16) | 0.0202 (7) | |
C19 | 0.68407 (14) | 0.3771 (5) | 0.19601 (17) | 0.0263 (8) | |
H19 | 0.6645 | 0.3237 | 0.1585 | 0.032* | |
C20 | 0.73511 (18) | 0.4424 (6) | 0.1836 (2) | 0.0320 (9) | |
H20 | 0.7508 | 0.4317 | 0.1385 | 0.038* | |
C21 | 0.7630 (2) | 0.5230 (5) | 0.2370 (3) | 0.0292 (13) | |
H21 | 0.7981 | 0.5705 | 0.2288 | 0.035* | |
C22 | 0.7405 (2) | 0.5353 (5) | 0.3019 (3) | 0.0234 (10) | |
H22 | 0.7603 | 0.5895 | 0.3390 | 0.028* | |
O23 | 0.67089 (18) | 0.4834 (3) | 0.3798 (3) | 0.0219 (9) | |
S24 | 0.59697 (3) | 0.30128 (11) | 0.28014 (5) | 0.02486 (19) | |
N25 | 0.5601 (2) | 0.9741 (4) | 0.5395 (3) | 0.0210 (9) | |
C26 | 0.51021 (18) | 1.0416 (6) | 0.5488 (2) | 0.0223 (9) | |
H26 | 0.4923 | 1.0962 | 0.5103 | 0.027* | |
C27 | 0.4846 (2) | 1.0345 (6) | 0.6115 (3) | 0.0295 (11) | |
H27 | 0.4490 | 1.0807 | 0.6166 | 0.035* | |
C28 | 0.5116 (2) | 0.9575 (6) | 0.6683 (2) | 0.0347 (10) | |
H28 | 0.4948 | 0.9502 | 0.7128 | 0.042* | |
C29 | 0.56242 (15) | 0.8933 (5) | 0.65881 (19) | 0.0320 (8) | |
H29 | 0.5810 | 0.8448 | 0.6980 | 0.038* | |
C30 | 0.58885 (13) | 0.8950 (4) | 0.59367 (17) | 0.0230 (7) | |
O31 | 0.58128 (18) | 0.9846 (3) | 0.4763 (2) | 0.0212 (9) | |
S32 | 0.65125 (3) | 0.80270 (12) | 0.57957 (5) | 0.0296 (2) | |
C33 | 0.8877 (2) | 0.0209 (5) | 0.3402 (3) | 0.0169 (10) | |
N34 | 0.93985 (10) | 0.0766 (4) | 0.34558 (13) | 0.0190 (6) | |
C35 | 0.97985 (18) | −0.0463 (6) | 0.3550 (2) | 0.0258 (9) | |
H35 | 1.0159 | −0.0058 | 0.3612 | 0.031* | |
C36 | 0.96829 (16) | −0.2304 (6) | 0.3558 (2) | 0.0292 (10) | |
H36 | 0.9966 | −0.3161 | 0.3620 | 0.035* | |
C37 | 0.91595 (14) | −0.2915 (5) | 0.34758 (18) | 0.0269 (8) | |
H37 | 0.9080 | −0.4183 | 0.3469 | 0.032* | |
C38 | 0.87541 (14) | −0.1622 (5) | 0.34031 (18) | 0.0233 (7) | |
H38 | 0.8390 | −0.2004 | 0.3354 | 0.028* | |
O39 | 0.94960 (10) | 0.2526 (4) | 0.33994 (15) | 0.0264 (6) | |
S40 | 0.84312 (3) | 0.20813 (11) | 0.33478 (5) | 0.02221 (17) | |
S41 | 0.77227 (3) | 0.09806 (11) | 0.37045 (5) | 0.01945 (17) | |
C42 | 0.7423 (3) | 0.0149 (4) | 0.2941 (4) | 0.0157 (12) | |
N43 | 0.69222 (13) | −0.0467 (4) | 0.30792 (17) | 0.0180 (7) | |
C44 | 0.65899 (13) | −0.1106 (4) | 0.25716 (17) | 0.0219 (7) | |
H44 | 0.6236 | −0.1497 | 0.2684 | 0.026* | |
C45 | 0.67693 (13) | −0.1180 (5) | 0.18980 (18) | 0.0271 (8) | |
H45 | 0.6539 | −0.1613 | 0.1538 | 0.033* | |
C46 | 0.72926 (16) | −0.0620 (5) | 0.17386 (19) | 0.0265 (8) | |
H46 | 0.7423 | −0.0700 | 0.1273 | 0.032* | |
C47 | 0.7618 (3) | 0.0052 (4) | 0.2263 (4) | 0.0214 (14) | |
H47 | 0.7974 | 0.0445 | 0.2161 | 0.026* | |
O48 | 0.67633 (12) | −0.0393 (3) | 0.37434 (17) | 0.0203 (6) | |
O49 | 0.69056 (8) | 0.1936 (3) | 0.52554 (13) | 0.0271 (5) | |
H49A | 0.7262 | 0.1920 | 0.5174 | 0.041* | |
H49B | 0.6880 | 0.0728 | 0.5310 | 0.041* | |
O50 | 0.56110 (8) | 0.6934 (3) | 0.33598 (13) | 0.0257 (5) | |
H50A | 0.5244 | 0.7115 | 0.3356 | 0.039* | |
H50B | 0.5700 | 0.5839 | 0.3239 | 0.039* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Na1 | 0.0196 (7) | 0.0196 (11) | 0.0234 (7) | 0.0009 (7) | 0.0026 (5) | −0.0003 (7) |
Na2 | 0.0203 (8) | 0.0189 (10) | 0.0223 (6) | −0.0018 (7) | 0.0016 (6) | 0.0016 (7) |
N1 | 0.0154 (16) | 0.0172 (12) | 0.0182 (17) | 0.0009 (15) | 0.0026 (12) | 0.0005 (15) |
C2 | 0.015 (3) | 0.0152 (18) | 0.027 (3) | −0.0043 (15) | −0.002 (2) | −0.0050 (16) |
C3 | 0.022 (3) | 0.026 (2) | 0.028 (3) | 0.0014 (16) | 0.005 (3) | −0.0027 (16) |
C4 | 0.034 (2) | 0.034 (2) | 0.0177 (19) | −0.003 (2) | 0.0063 (17) | −0.0016 (18) |
C5 | 0.0275 (18) | 0.0252 (17) | 0.0256 (19) | −0.0014 (15) | −0.0027 (15) | 0.0018 (15) |
C6 | 0.0184 (16) | 0.0214 (16) | 0.0300 (19) | 0.0002 (14) | −0.0039 (15) | −0.0012 (15) |
O7 | 0.0259 (15) | 0.0232 (11) | 0.0173 (14) | 0.0010 (14) | 0.0057 (12) | 0.0016 (14) |
S8 | 0.0167 (4) | 0.0223 (4) | 0.0223 (4) | −0.0001 (3) | 0.0008 (3) | −0.0001 (4) |
S9 | 0.0176 (4) | 0.0174 (4) | 0.0334 (5) | 0.0008 (3) | −0.0010 (4) | −0.0023 (4) |
C10 | 0.020 (2) | 0.0223 (17) | 0.015 (2) | −0.0022 (17) | 0.0002 (18) | 0.0049 (17) |
N11 | 0.0185 (15) | 0.0199 (15) | 0.0268 (17) | 0.0000 (12) | −0.0002 (12) | −0.0030 (13) |
C12 | 0.017 (2) | 0.0306 (18) | 0.030 (3) | 0.003 (2) | −0.0022 (17) | −0.005 (2) |
C13 | 0.025 (2) | 0.029 (2) | 0.020 (2) | −0.0078 (17) | −0.0006 (15) | −0.0038 (17) |
C14 | 0.0280 (19) | 0.0205 (17) | 0.025 (2) | 0.0015 (15) | 0.0032 (15) | −0.0023 (14) |
C15 | 0.0201 (17) | 0.0221 (18) | 0.0203 (18) | 0.0025 (14) | −0.0007 (15) | 0.0015 (14) |
O16 | 0.0310 (17) | 0.0227 (14) | 0.0466 (18) | 0.0028 (13) | 0.0001 (15) | −0.0032 (13) |
N17 | 0.017 (2) | 0.0170 (13) | 0.0162 (19) | 0.0016 (14) | 0.0036 (15) | 0.0023 (15) |
C18 | 0.0254 (17) | 0.0142 (15) | 0.0211 (18) | 0.0072 (14) | −0.0027 (14) | 0.0027 (13) |
C19 | 0.036 (2) | 0.0246 (17) | 0.0183 (19) | 0.0091 (16) | 0.0015 (15) | 0.0015 (14) |
C20 | 0.040 (3) | 0.034 (2) | 0.023 (2) | 0.012 (2) | 0.0086 (18) | 0.007 (2) |
C21 | 0.025 (3) | 0.028 (2) | 0.035 (3) | 0.0056 (17) | 0.010 (2) | 0.0114 (19) |
C22 | 0.024 (2) | 0.0194 (15) | 0.026 (2) | −0.0023 (19) | 0.0003 (17) | 0.0041 (18) |
O23 | 0.023 (2) | 0.0225 (15) | 0.020 (2) | −0.0003 (10) | 0.0026 (16) | 0.0006 (11) |
S24 | 0.0188 (4) | 0.0237 (4) | 0.0321 (5) | 0.0009 (3) | −0.0039 (4) | −0.0021 (4) |
N25 | 0.022 (2) | 0.0149 (13) | 0.026 (2) | −0.0064 (14) | −0.0042 (16) | −0.0020 (15) |
C26 | 0.014 (2) | 0.0229 (16) | 0.030 (2) | −0.0051 (19) | 0.0006 (16) | −0.0032 (19) |
C27 | 0.023 (2) | 0.0294 (19) | 0.036 (3) | 0.001 (2) | 0.004 (2) | −0.005 (2) |
C28 | 0.039 (3) | 0.039 (2) | 0.025 (2) | −0.012 (2) | 0.0154 (19) | −0.003 (2) |
C29 | 0.044 (2) | 0.0296 (18) | 0.0219 (19) | −0.0083 (17) | −0.0064 (17) | 0.0028 (16) |
C30 | 0.0276 (18) | 0.0170 (15) | 0.0245 (19) | −0.0078 (14) | −0.0031 (15) | 0.0011 (14) |
O31 | 0.027 (2) | 0.0212 (15) | 0.0157 (19) | −0.0011 (10) | 0.0056 (16) | 0.0035 (10) |
S32 | 0.0226 (5) | 0.0258 (4) | 0.0404 (5) | −0.0033 (4) | −0.0080 (4) | 0.0061 (4) |
C33 | 0.013 (2) | 0.0204 (19) | 0.018 (2) | −0.0027 (14) | 0.0012 (18) | 0.0048 (16) |
N34 | 0.0184 (15) | 0.0208 (15) | 0.0177 (15) | −0.0004 (11) | 0.0012 (12) | 0.0011 (12) |
C35 | 0.016 (2) | 0.0321 (19) | 0.029 (3) | 0.006 (2) | 0.0015 (17) | 0.005 (2) |
C36 | 0.028 (2) | 0.025 (2) | 0.034 (2) | 0.0109 (17) | 0.0112 (17) | 0.0102 (17) |
C37 | 0.0299 (19) | 0.0197 (17) | 0.031 (2) | 0.0030 (16) | 0.0082 (16) | 0.0029 (15) |
C38 | 0.0214 (18) | 0.0237 (18) | 0.0247 (19) | −0.0026 (14) | 0.0021 (16) | 0.0014 (15) |
O39 | 0.0208 (14) | 0.0211 (14) | 0.0372 (16) | −0.0042 (11) | −0.0021 (13) | 0.0015 (11) |
S40 | 0.0160 (4) | 0.0168 (4) | 0.0338 (5) | −0.0014 (3) | −0.0001 (4) | 0.0036 (4) |
S41 | 0.0157 (4) | 0.0201 (4) | 0.0226 (4) | −0.0007 (3) | 0.0008 (3) | 0.0012 (4) |
C42 | 0.017 (3) | 0.0138 (18) | 0.017 (3) | 0.0040 (13) | 0.002 (2) | −0.0006 (13) |
N43 | 0.0181 (16) | 0.0150 (12) | 0.0211 (17) | 0.0051 (15) | 0.0019 (13) | −0.0011 (15) |
C44 | 0.0158 (16) | 0.0209 (16) | 0.0291 (19) | −0.0009 (14) | 0.0009 (14) | −0.0031 (14) |
C45 | 0.0243 (18) | 0.0305 (19) | 0.026 (2) | 0.0017 (15) | −0.0063 (15) | −0.0036 (16) |
C46 | 0.034 (2) | 0.0272 (18) | 0.0185 (19) | 0.004 (2) | 0.0053 (16) | −0.0049 (17) |
C47 | 0.019 (3) | 0.024 (3) | 0.021 (3) | 0.0018 (12) | 0.005 (2) | 0.0008 (13) |
O48 | 0.0208 (14) | 0.0218 (10) | 0.0183 (15) | −0.0017 (13) | 0.0060 (11) | 0.0025 (14) |
O49 | 0.0188 (11) | 0.0225 (12) | 0.0399 (14) | 0.0010 (10) | 0.0010 (10) | 0.0065 (11) |
O50 | 0.0181 (11) | 0.0247 (12) | 0.0343 (13) | 0.0037 (10) | −0.0003 (10) | −0.0038 (11) |
Na1—O31 | 2.328 (4) | C21—C22 | 1.366 (8) |
Na1—O23 | 2.355 (4) | C21—H21 | 0.9500 |
Na1—O50 | 2.373 (3) | C22—H22 | 0.9500 |
Na1—O48i | 2.459 (3) | N25—O31 | 1.321 (7) |
Na1—O7 | 2.495 (3) | N25—C26 | 1.345 (6) |
Na1—S32 | 2.990 (3) | N25—C30 | 1.387 (6) |
Na1—H50B | 2.6283 | C26—C27 | 1.360 (7) |
Na2—O23 | 2.332 (4) | C26—H26 | 0.9500 |
Na2—O31ii | 2.335 (4) | C27—C28 | 1.397 (7) |
Na2—O49 | 2.404 (3) | C27—H27 | 0.9500 |
Na2—O7 | 2.459 (3) | C28—C29 | 1.358 (6) |
Na2—O48 | 2.473 (3) | C28—H28 | 0.9500 |
Na2—S24 | 2.999 (2) | C29—C30 | 1.409 (5) |
N1—O7 | 1.316 (4) | C29—H29 | 0.9500 |
N1—C6 | 1.342 (4) | C30—S32 | 1.712 (4) |
N1—C2 | 1.374 (7) | O31—Na2i | 2.335 (4) |
C2—C3 | 1.372 (10) | C33—N34 | 1.362 (6) |
C2—S8 | 1.785 (7) | C33—C38 | 1.377 (4) |
C3—C4 | 1.371 (8) | C33—S40 | 1.766 (5) |
C3—H3 | 0.9500 | N34—O39 | 1.317 (4) |
C4—C5 | 1.382 (5) | N34—C35 | 1.353 (5) |
C4—H4 | 0.9500 | C35—C36 | 1.380 (6) |
C5—C6 | 1.373 (4) | C35—H35 | 0.9500 |
C5—H5 | 0.9500 | C36—C37 | 1.384 (5) |
C6—H6 | 0.9500 | C36—H36 | 0.9500 |
S8—S9 | 2.0536 (11) | C37—C38 | 1.389 (5) |
S9—C10 | 1.758 (5) | C37—H37 | 0.9500 |
C10—N11 | 1.367 (6) | C38—H38 | 0.9500 |
C10—C15 | 1.383 (5) | S40—S41 | 2.0521 (11) |
N11—O16 | 1.320 (4) | S41—C42 | 1.750 (7) |
N11—C12 | 1.347 (5) | C42—N43 | 1.348 (7) |
C12—C13 | 1.380 (6) | C42—C47 | 1.386 (10) |
C12—H12 | 0.9500 | N43—O48 | 1.332 (4) |
C13—C14 | 1.379 (5) | N43—C44 | 1.358 (4) |
C13—H13 | 0.9500 | C44—C45 | 1.365 (4) |
C14—C15 | 1.396 (5) | C44—H44 | 0.9500 |
C14—H14 | 0.9500 | C45—C46 | 1.396 (5) |
C15—H15 | 0.9500 | C45—H45 | 0.9500 |
N17—O23 | 1.339 (7) | C46—C47 | 1.380 (8) |
N17—C22 | 1.378 (6) | C46—H46 | 0.9500 |
N17—C18 | 1.378 (5) | C47—H47 | 0.9500 |
C18—C19 | 1.405 (4) | O48—Na1ii | 2.459 (3) |
C18—S24 | 1.716 (3) | O49—H49A | 0.8987 |
C19—C20 | 1.375 (6) | O49—H49B | 0.8936 |
C19—H19 | 0.9500 | O50—H50A | 0.9220 |
C20—C21 | 1.368 (7) | O50—H50B | 0.8634 |
C20—H20 | 0.9500 | ||
O31—Na1—O23 | 172.9 (2) | C12—C13—H13 | 120.3 |
O31—Na1—O50 | 94.98 (15) | C13—C14—C15 | 119.1 (3) |
O23—Na1—O50 | 86.52 (14) | C13—C14—H14 | 120.5 |
O31—Na1—O48i | 79.63 (13) | C15—C14—H14 | 120.5 |
O23—Na1—O48i | 93.33 (13) | C10—C15—C14 | 120.0 (4) |
O50—Na1—O48i | 94.33 (12) | C10—C15—H15 | 120.0 |
O31—Na1—O7 | 106.45 (14) | C14—C15—H15 | 120.0 |
O23—Na1—O7 | 80.56 (13) | O23—N17—C22 | 116.8 (4) |
O50—Na1—O7 | 87.02 (11) | O23—N17—C18 | 121.8 (4) |
O48i—Na1—O7 | 173.66 (15) | C22—N17—C18 | 121.4 (4) |
O31—Na1—S32 | 66.01 (13) | N17—C18—C19 | 116.5 (3) |
O23—Na1—S32 | 114.50 (14) | N17—C18—S24 | 120.1 (3) |
O50—Na1—S32 | 154.47 (11) | C19—C18—S24 | 123.4 (3) |
O48i—Na1—S32 | 98.48 (10) | C20—C19—C18 | 122.2 (3) |
O7—Na1—S32 | 82.68 (10) | C20—C19—H19 | 118.9 |
O31—Na1—Na2 | 148.47 (11) | C18—C19—H19 | 118.9 |
O23—Na1—Na2 | 38.50 (10) | C21—C20—C19 | 119.2 (4) |
O50—Na1—Na2 | 86.09 (7) | C21—C20—H20 | 120.4 |
O48i—Na1—Na2 | 131.80 (9) | C19—C20—H20 | 120.4 |
O7—Na1—Na2 | 42.06 (9) | C22—C21—C20 | 120.0 (5) |
S32—Na1—Na2 | 101.31 (5) | C22—C21—H21 | 120.0 |
O31—Na1—Na2i | 37.85 (11) | C20—C21—H21 | 120.0 |
O23—Na1—Na2i | 135.08 (11) | C21—C22—N17 | 120.7 (5) |
O50—Na1—Na2i | 96.66 (7) | C21—C22—H22 | 119.7 |
O48i—Na1—Na2i | 41.79 (8) | N17—C22—H22 | 119.7 |
O7—Na1—Na2i | 144.23 (9) | N17—O23—Na2 | 117.2 (2) |
S32—Na1—Na2i | 78.91 (4) | N17—O23—Na1 | 128.6 (3) |
Na2—Na1—Na2i | 173.05 (4) | Na2—O23—Na1 | 102.53 (19) |
O31—Na1—H50B | 113.5 | C18—S24—Na2 | 90.25 (11) |
O23—Na1—H50B | 68.7 | O31—N25—C26 | 117.9 (4) |
O50—Na1—H50B | 19.0 | O31—N25—C30 | 120.2 (4) |
O48i—Na1—H50B | 101.5 | C26—N25—C30 | 121.9 (5) |
O7—Na1—H50B | 77.9 | N25—C26—C27 | 122.3 (5) |
S32—Na1—H50B | 159.6 | N25—C26—H26 | 118.9 |
Na2—Na1—H50B | 68.1 | C27—C26—H26 | 118.9 |
Na2i—Na1—H50B | 113.8 | C26—C27—C28 | 118.5 (5) |
O23—Na2—O31ii | 173.9 (2) | C26—C27—H27 | 120.8 |
O23—Na2—O49 | 96.71 (16) | C28—C27—H27 | 120.8 |
O31ii—Na2—O49 | 86.74 (14) | C29—C28—C27 | 118.8 (4) |
O23—Na2—O7 | 81.77 (13) | C29—C28—H28 | 120.6 |
O31ii—Na2—O7 | 93.04 (13) | C27—C28—H28 | 120.6 |
O49—Na2—O7 | 94.09 (12) | C28—C29—C30 | 123.2 (4) |
O23—Na2—O48 | 105.84 (14) | C28—C29—H29 | 118.4 |
O31ii—Na2—O48 | 79.21 (13) | C30—C29—H29 | 118.4 |
O49—Na2—O48 | 87.67 (11) | N25—C30—C29 | 115.2 (3) |
O7—Na2—O48 | 171.96 (15) | N25—C30—S32 | 120.9 (3) |
O23—Na2—S24 | 66.19 (13) | C29—C30—S32 | 123.9 (3) |
O31ii—Na2—S24 | 111.71 (14) | N25—O31—Na1 | 117.6 (2) |
O49—Na2—S24 | 157.31 (10) | N25—O31—Na2i | 127.9 (2) |
O7—Na2—S24 | 97.82 (10) | Na1—O31—Na2i | 104.43 (19) |
O48—Na2—S24 | 83.23 (10) | C30—S32—Na1 | 90.28 (12) |
O23—Na2—Na1 | 38.96 (11) | N34—C33—C38 | 120.2 (4) |
O31ii—Na2—Na1 | 135.80 (10) | N34—C33—S40 | 111.6 (3) |
O49—Na2—Na1 | 96.87 (8) | C38—C33—S40 | 128.2 (4) |
O7—Na2—Na1 | 42.81 (8) | O39—N34—C35 | 121.9 (3) |
O48—Na2—Na1 | 144.76 (9) | O39—N34—C33 | 117.5 (3) |
S24—Na2—Na1 | 79.32 (4) | C35—N34—C33 | 120.6 (3) |
O23—Na2—Na1ii | 147.27 (11) | N34—C35—C36 | 120.0 (4) |
O31ii—Na2—Na1ii | 37.72 (10) | N34—C35—H35 | 120.0 |
O49—Na2—Na1ii | 85.78 (7) | C36—C35—H35 | 120.0 |
O7—Na2—Na1ii | 130.75 (9) | C35—C36—C37 | 120.7 (4) |
O48—Na2—Na1ii | 41.50 (8) | C35—C36—H36 | 119.6 |
S24—Na2—Na1ii | 100.67 (5) | C37—C36—H36 | 119.6 |
Na1—Na2—Na1ii | 173.05 (4) | C36—C37—C38 | 118.1 (4) |
O7—N1—C6 | 122.1 (3) | C36—C37—H37 | 121.0 |
O7—N1—C2 | 117.8 (4) | C38—C37—H37 | 121.0 |
C6—N1—C2 | 120.1 (4) | C33—C38—C37 | 120.3 (4) |
C3—C2—N1 | 121.2 (5) | C33—C38—H38 | 119.8 |
C3—C2—S8 | 130.7 (5) | C37—C38—H38 | 119.8 |
N1—C2—S8 | 108.0 (4) | C33—S40—S41 | 102.27 (16) |
C4—C3—C2 | 118.4 (5) | C42—S41—S40 | 102.9 (2) |
C4—C3—H3 | 120.8 | N43—C42—C47 | 119.3 (5) |
C2—C3—H3 | 120.8 | N43—C42—S41 | 110.1 (4) |
C3—C4—C5 | 120.2 (4) | C47—C42—S41 | 130.5 (5) |
C3—C4—H4 | 119.9 | O48—N43—C42 | 116.6 (4) |
C5—C4—H4 | 119.9 | O48—N43—C44 | 121.1 (3) |
C6—C5—C4 | 120.0 (3) | C42—N43—C44 | 122.3 (4) |
C6—C5—H5 | 120.0 | N43—C44—C45 | 119.4 (3) |
C4—C5—H5 | 120.0 | N43—C44—H44 | 120.3 |
N1—C6—C5 | 120.1 (3) | C45—C44—H44 | 120.3 |
N1—C6—H6 | 119.9 | C44—C45—C46 | 119.9 (3) |
C5—C6—H6 | 119.9 | C44—C45—H45 | 120.1 |
N1—O7—Na2 | 125.9 (2) | C46—C45—H45 | 120.1 |
N1—O7—Na1 | 123.6 (2) | C47—C46—C45 | 119.4 (4) |
Na2—O7—Na1 | 95.13 (14) | C47—C46—H46 | 120.3 |
C2—S8—S9 | 101.8 (2) | C45—C46—H46 | 120.3 |
C10—S9—S8 | 101.62 (18) | C46—C47—C42 | 119.6 (5) |
N11—C10—C15 | 119.3 (4) | C46—C47—H47 | 120.2 |
N11—C10—S9 | 111.9 (3) | C42—C47—H47 | 120.2 |
C15—C10—S9 | 128.7 (4) | N43—O48—Na1ii | 123.8 (2) |
O16—N11—C12 | 122.6 (3) | N43—O48—Na2 | 124.4 (2) |
O16—N11—C10 | 116.7 (3) | Na1ii—O48—Na2 | 96.72 (14) |
C12—N11—C10 | 120.7 (3) | Na2—O49—H49A | 118.6 |
N11—C12—C13 | 121.1 (4) | Na2—O49—H49B | 98.2 |
N11—C12—H12 | 119.5 | H49A—O49—H49B | 94.4 |
C13—C12—H12 | 119.5 | Na1—O50—H50A | 128.3 |
C14—C13—C12 | 119.4 (4) | Na1—O50—H50B | 97.4 |
C14—C13—H13 | 120.3 | H50A—O50—H50B | 112.6 |
O31—Na1—Na2—O23 | −177.5 (4) | S24—Na2—O23—N17 | −43.5 (3) |
O50—Na1—Na2—O23 | 89.3 (2) | Na1—Na2—O23—N17 | −146.4 (5) |
O48i—Na1—Na2—O23 | −3.0 (2) | Na1ii—Na2—O23—N17 | 28.3 (5) |
O7—Na1—Na2—O23 | 179.2 (3) | O49—Na2—O23—Na1 | −92.64 (17) |
S32—Na1—Na2—O23 | −115.3 (2) | O7—Na2—O23—Na1 | 0.54 (18) |
O31—Na1—Na2—O31ii | 7.08 (14) | O48—Na2—O23—Na1 | 177.89 (15) |
O23—Na1—Na2—O31ii | −175.4 (4) | S24—Na2—O23—Na1 | 102.91 (17) |
O50—Na1—Na2—O31ii | −86.1 (2) | Na1ii—Na2—O23—Na1 | 174.73 (9) |
O48i—Na1—Na2—O31ii | −178.4 (2) | O50—Na1—O23—N17 | 52.9 (4) |
O7—Na1—Na2—O31ii | 3.8 (2) | O48i—Na1—O23—N17 | −41.2 (4) |
S32—Na1—Na2—O31ii | 69.24 (19) | O7—Na1—O23—N17 | 140.5 (4) |
O31—Na1—Na2—O49 | −85.3 (3) | S32—Na1—O23—N17 | −142.1 (4) |
O23—Na1—Na2—O49 | 92.2 (2) | Na2—Na1—O23—N17 | 141.0 (5) |
O50—Na1—Na2—O49 | −178.48 (13) | Na2i—Na1—O23—N17 | −43.0 (5) |
O48i—Na1—Na2—O49 | 89.20 (15) | O50—Na1—O23—Na2 | −88.09 (17) |
O7—Na1—Na2—O49 | −88.60 (15) | O48i—Na1—O23—Na2 | 177.77 (17) |
S32—Na1—Na2—O49 | −23.15 (7) | O7—Na1—O23—Na2 | −0.54 (18) |
O31—Na1—Na2—O7 | 3.3 (3) | S32—Na1—O23—Na2 | 76.89 (19) |
O23—Na1—Na2—O7 | −179.2 (3) | Na2i—Na1—O23—Na2 | 175.96 (7) |
O50—Na1—Na2—O7 | −89.89 (15) | N17—C18—S24—Na2 | −30.1 (3) |
O48i—Na1—Na2—O7 | 177.8 (3) | C19—C18—S24—Na2 | 149.7 (3) |
S32—Na1—Na2—O7 | 65.44 (13) | O23—Na2—S24—C18 | 33.22 (15) |
O31—Na1—Na2—O48 | 179.0 (3) | O31ii—Na2—S24—C18 | −152.94 (15) |
O23—Na1—Na2—O48 | −3.5 (2) | O49—Na2—S24—C18 | −10.4 (3) |
O50—Na1—Na2—O48 | 85.81 (18) | O7—Na2—S24—C18 | 110.60 (14) |
O48i—Na1—Na2—O48 | −6.51 (11) | O48—Na2—S24—C18 | −77.44 (13) |
O7—Na1—Na2—O48 | 175.7 (3) | Na1—Na2—S24—C18 | 71.81 (11) |
S32—Na1—Na2—O48 | −118.86 (18) | Na1ii—Na2—S24—C18 | −115.26 (11) |
O31—Na1—Na2—S24 | 117.3 (3) | O31—N25—C26—C27 | 178.8 (4) |
O23—Na1—Na2—S24 | −65.2 (2) | C30—N25—C26—C27 | −0.9 (6) |
O50—Na1—Na2—S24 | 24.16 (7) | N25—C26—C27—C28 | 1.4 (7) |
O48i—Na1—Na2—S24 | −68.16 (13) | C26—C27—C28—C29 | 0.1 (7) |
O7—Na1—Na2—S24 | 114.04 (15) | C27—C28—C29—C30 | −2.1 (6) |
S32—Na1—Na2—S24 | 179.49 (8) | O31—N25—C30—C29 | 179.3 (3) |
O7—N1—C2—C3 | 178.7 (4) | C26—N25—C30—C29 | −0.9 (5) |
C6—N1—C2—C3 | −1.6 (6) | O31—N25—C30—S32 | −2.2 (5) |
O7—N1—C2—S8 | −2.2 (4) | C26—N25—C30—S32 | 177.6 (3) |
C6—N1—C2—S8 | 177.5 (3) | C28—C29—C30—N25 | 2.4 (5) |
N1—C2—C3—C4 | 0.8 (6) | C28—C29—C30—S32 | −176.0 (3) |
S8—C2—C3—C4 | −178.0 (3) | C26—N25—O31—Na1 | −132.8 (3) |
C2—C3—C4—C5 | −0.1 (6) | C30—N25—O31—Na1 | 47.0 (5) |
C3—C4—C5—C6 | 0.0 (6) | C26—N25—O31—Na2i | 87.3 (5) |
O7—N1—C6—C5 | −178.8 (3) | C30—N25—O31—Na2i | −92.9 (4) |
C2—N1—C6—C5 | 1.5 (5) | O50—Na1—O31—N25 | 117.2 (4) |
C4—C5—C6—N1 | −0.7 (5) | O48i—Na1—O31—N25 | −149.3 (4) |
C6—N1—O7—Na2 | 37.1 (5) | O7—Na1—O31—N25 | 28.9 (4) |
C2—N1—O7—Na2 | −143.2 (3) | S32—Na1—O31—N25 | −45.1 (3) |
C6—N1—O7—Na1 | −90.7 (4) | Na2—Na1—O31—N25 | 26.6 (5) |
C2—N1—O7—Na1 | 89.0 (4) | Na2i—Na1—O31—N25 | −148.3 (5) |
O23—Na2—O7—N1 | −139.2 (3) | O50—Na1—O31—Na2i | −94.44 (18) |
O31ii—Na2—O7—N1 | 44.0 (3) | O48i—Na1—O31—Na2i | −0.94 (18) |
O49—Na2—O7—N1 | −43.0 (3) | O7—Na1—O31—Na2i | 177.20 (15) |
S24—Na2—O7—N1 | 156.4 (3) | S32—Na1—O31—Na2i | 103.27 (18) |
Na1—Na2—O7—N1 | −138.7 (3) | Na2—Na1—O31—Na2i | 174.91 (10) |
Na1ii—Na2—O7—N1 | 45.0 (3) | N25—C30—S32—Na1 | −28.0 (3) |
O23—Na2—O7—Na1 | −0.50 (16) | C29—C30—S32—Na1 | 150.4 (3) |
O31ii—Na2—O7—Na1 | −177.35 (15) | O31—Na1—S32—C30 | 32.34 (16) |
O49—Na2—O7—Na1 | 95.70 (12) | O23—Na1—S32—C30 | −155.44 (16) |
S24—Na2—O7—Na1 | −64.94 (12) | O50—Na1—S32—C30 | −12.3 (2) |
Na1ii—Na2—O7—Na1 | −176.35 (6) | O48i—Na1—S32—C30 | 106.95 (14) |
O31—Na1—O7—N1 | −38.2 (3) | O7—Na1—S32—C30 | −79.35 (13) |
O23—Na1—O7—N1 | 140.5 (3) | Na2—Na1—S32—C30 | −117.25 (11) |
O50—Na1—O7—N1 | −132.5 (3) | Na2i—Na1—S32—C30 | 69.83 (11) |
S32—Na1—O7—N1 | 24.1 (3) | C38—C33—N34—O39 | 175.1 (4) |
Na2—Na1—O7—N1 | 140.0 (3) | S40—C33—N34—O39 | −5.8 (5) |
Na2i—Na1—O7—N1 | −35.2 (4) | C38—C33—N34—C35 | −3.7 (7) |
O31—Na1—O7—Na2 | −178.21 (15) | S40—C33—N34—C35 | 175.5 (3) |
O23—Na1—O7—Na2 | 0.50 (16) | O39—N34—C35—C36 | −175.5 (4) |
O50—Na1—O7—Na2 | 87.46 (13) | C33—N34—C35—C36 | 3.2 (6) |
S32—Na1—O7—Na2 | −115.94 (10) | N34—C35—C36—C37 | −0.6 (6) |
Na2i—Na1—O7—Na2 | −175.27 (8) | C35—C36—C37—C38 | −1.6 (6) |
C3—C2—S8—S9 | 4.4 (4) | N34—C33—C38—C37 | 1.4 (7) |
N1—C2—S8—S9 | −174.6 (2) | S40—C33—C38—C37 | −177.6 (4) |
C2—S8—S9—C10 | −91.6 (2) | C36—C37—C38—C33 | 1.1 (6) |
S8—S9—C10—N11 | −159.6 (3) | N34—C33—S40—S41 | −155.9 (3) |
S8—S9—C10—C15 | 24.0 (5) | C38—C33—S40—S41 | 23.2 (5) |
C15—C10—N11—O16 | 173.5 (4) | C33—S40—S41—C42 | −89.8 (2) |
S9—C10—N11—O16 | −3.3 (5) | S40—S41—C42—N43 | −173.9 (2) |
C15—C10—N11—C12 | −7.2 (7) | S40—S41—C42—C47 | 5.9 (4) |
S9—C10—N11—C12 | 176.0 (3) | C47—C42—N43—O48 | 177.9 (3) |
O16—N11—C12—C13 | −176.1 (4) | S41—C42—N43—O48 | −2.2 (4) |
C10—N11—C12—C13 | 4.7 (7) | C47—C42—N43—C44 | −3.2 (5) |
N11—C12—C13—C14 | 0.4 (6) | S41—C42—N43—C44 | 176.7 (3) |
C12—C13—C14—C15 | −2.7 (5) | O48—N43—C44—C45 | −179.3 (3) |
N11—C10—C15—C14 | 4.9 (7) | C42—N43—C44—C45 | 1.8 (5) |
S9—C10—C15—C14 | −178.9 (4) | N43—C44—C45—C46 | 0.7 (5) |
C13—C14—C15—C10 | 0.0 (5) | C44—C45—C46—C47 | −1.8 (5) |
O23—N17—C18—C19 | −178.6 (3) | C45—C46—C47—C42 | 0.4 (6) |
C22—N17—C18—C19 | −1.6 (5) | N43—C42—C47—C46 | 2.0 (5) |
O23—N17—C18—S24 | 1.3 (5) | S41—C42—C47—C46 | −177.9 (3) |
C22—N17—C18—S24 | 178.3 (3) | C42—N43—O48—Na1ii | −141.7 (3) |
N17—C18—C19—C20 | 1.6 (5) | C44—N43—O48—Na1ii | 39.4 (4) |
S24—C18—C19—C20 | −178.2 (3) | C42—N43—O48—Na2 | 89.4 (4) |
C18—C19—C20—C21 | −1.4 (6) | C44—N43—O48—Na2 | −89.6 (4) |
C19—C20—C21—C22 | 1.0 (6) | O23—Na2—O48—N43 | −38.0 (3) |
C20—C21—C22—N17 | −1.0 (6) | O31ii—Na2—O48—N43 | 138.5 (3) |
O23—N17—C22—C21 | 178.5 (4) | O49—Na2—O48—N43 | −134.3 (3) |
C18—N17—C22—C21 | 1.4 (6) | S24—Na2—O48—N43 | 24.8 (3) |
C22—N17—O23—Na2 | −133.1 (3) | Na1—Na2—O48—N43 | −35.7 (4) |
C18—N17—O23—Na2 | 44.0 (5) | Na1ii—Na2—O48—N43 | 139.4 (3) |
C22—N17—O23—Na1 | 90.6 (5) | O23—Na2—O48—Na1ii | −177.42 (15) |
C18—N17—O23—Na1 | −92.3 (4) | O31ii—Na2—O48—Na1ii | −0.86 (16) |
O49—Na2—O23—N17 | 120.9 (3) | O49—Na2—O48—Na1ii | 86.26 (13) |
O7—Na2—O23—N17 | −145.9 (4) | S24—Na2—O48—Na1ii | −114.56 (11) |
O48—Na2—O23—N17 | 31.4 (4) | Na1—Na2—O48—Na1ii | −175.12 (8) |
Symmetry codes: (i) x, y+1, z; (ii) x, y−1, z. |
Cg3 is the centroid of the N34/C33–C35 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O49—H49A···O16iii | 0.90 | 1.91 | 2.784 (3) | 165 |
O49—H49A···N11iii | 0.90 | 2.67 | 3.417 (3) | 141 |
O49—H49B···S32ii | 0.89 | 2.37 | 3.198 (2) | 154 |
O50—H50A···O39iv | 0.92 | 1.88 | 2.798 (3) | 177 |
O50—H50A···N34iv | 0.92 | 2.62 | 3.455 (3) | 151 |
O50—H50B···S24 | 0.86 | 2.33 | 3.193 (2) | 174 |
C29—H29···Cg1v | 0.95 | 2.89 | 3.618 (4) | 134 |
Symmetry codes: (ii) x, y−1, z; (iii) x+1/2, −y+1, z; (iv) x−1/2, −y+1, z; (v) −x+3/2, y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Na(C5H4NOS)(C10H8N2O2S2)(H2O)] |
Mr | 838.92 |
Crystal system, space group | Orthorhombic, Pca21 |
Temperature (K) | 173 |
a, b, c (Å) | 24.829 (2), 7.3290 (7), 19.1378 (17) |
V (Å3) | 3482.5 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.48 |
Crystal size (mm) | 0.54 × 0.19 × 0.14 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2008a) |
Tmin, Tmax | 0.782, 0.936 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 38861, 8403, 6205 |
Rint | 0.077 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.074, 0.93 |
No. of reflections | 8403 |
No. of parameters | 469 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.23 |
Absolute structure | Flack (1983), 4068 Friedel pairs |
Absolute structure parameter | 0.47 (6) |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008b), SHELXL97 (Sheldrick, 2008b), SHELXTL (Sheldrick, 2008b) and PLATON (Spek, 2009).
Cg3 is the centroid of the N34/C33–C35 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O49—H49A···O16i | 0.90 | 1.91 | 2.784 (3) | 165 |
O49—H49A···N11i | 0.90 | 2.67 | 3.417 (3) | 141 |
O49—H49B···S32ii | 0.89 | 2.37 | 3.198 (2) | 154 |
O50—H50A···O39iii | 0.92 | 1.88 | 2.798 (3) | 177 |
O50—H50A···N34iii | 0.92 | 2.62 | 3.455 (3) | 151 |
O50—H50B···S24 | 0.86 | 2.33 | 3.193 (2) | 174 |
C29—H29···Cg1iv | 0.95 | 2.89 | 3.618 (4) | 134 |
Symmetry codes: (i) x+1/2, −y+1, z; (ii) x, y−1, z; (iii) x−1/2, −y+1, z; (iv) −x+3/2, y+1, z+1/2. |
References
Bovin, D. H. R., Crepon, E. & Zard, S. Z. (1992). Bull. Soc. Chim. Fr. 129, 145–150. Google Scholar
Bruker (2008). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Jebas, S. R., Balasubramanian, T., Ravidurai, B. & Kumaresan, S. (2005). Acta Cryst. E61, o2677–o2678. Web of Science CSD CrossRef IUCr Journals Google Scholar
Katsuyuki, N., Carter, B. J., Xu, J. & Hetch, S. M. (1991). J. Am. Chem. Soc. 113, 5099–5100. Google Scholar
Leonard, F., Barklay, F. A., Brown, E. V., Anderson, F. E. & Green, D. M. (1955). Antibiot. Chemother. pp. 261–264. Google Scholar
Lobana, T. S. & Bhatia, P. K. (1989). J. Sci. Ind. Res. 48, 394–401. CAS Google Scholar
Ravindran Durai Nayagam, B., Jebas, S. R., Grace, S. & Schollmeyer, D. (2008). Acta Cryst. E64, o409. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008a). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008b). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Symons, M. C. R. & West, D.-X. (1985). J. Chem. Soc. Dalton Trans. pp. 379–381. CrossRef Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
N-oxides and their derivatives show a broad spectrum of biological activity such as antifungal, antimicrobial and antibacterial activities (Lobana & Bhatia, 1989; Symons et al., 1985). These compounds are also found to be involved in DNA strand scission under physiological conditions (Katsuyuki et al., 1991; Bovin et al., 1992). Pyridine N-oxides bearing a sulfur group in position two display significant antimicrobial activity (Leonard et al., 1955). In view of the importance of N-oxides, we have previously reported the crystal structures of N-oxide derivatives (Jebas et al., 2005; Ravindran et al., 2008). As an extension of our work on N-oxide derivatives, we report here the crystal structure of the title compound (I).
In the asymmetric unit of (I)(Fig 1), the NaI ion is six coordinated by four oxygen atoms, two from 1-oxypyridine-2-thiolato and two from 2,2-thiobis(pyridine N-oxide) ligands, and one sulfur atom from 1-oxypyridine-2-thiolato ligand. The pyridyl rings are essentially planar with the maximum deviation from planarity of -0.034 (5) Å for atom C10. The N–O bond lengths are in good agreement with the mean value of 1.304 (15) Å reported in the literature for pyridine N-oxides.
Intramolecular O—H···O hydrogen bonding influence the conformation of the molecule. The crystal packing (Fig 2) is consolidated by intermolecular O—H···O, O—H···N and O—H···S hydrogen bonding together with intramolecular S···O= 2.587 (3) to 3.069 (3) Å; N···S=2.686 (4) to 2.700 (5) Å; S···Na=3.807 (2) Å, intermolecular S···Oi=3.065 (3) Å, O···Oi=2.784 (3), O···Oii=2.798 (3) Å, intramolecular S···O =2.587 (3)to 3.069 (3) Å; O···O = 2.784 (3) to 2.798 (3) Å; S···Na=3.807 (2) Å and N···S=2.686 (4) to 2.700 (5) Å short contacts [symmetry code: (i) 1/2+X,1-Y,Z (ii) -1/2+X, 1-Y, Z]. π—π interactions with cg1-cg4iii=3.587 (2)Å (Where Cg1 is N1/C2—C6; Cg2 is N25/C26—C30) [symmetry code: (iii) X, -1+Y, Z] together with weak C—H··· π interactions. The molecules are linked into polymeric chains along the b-direction.