organic compounds
N,N′-Bis[4-(trifluoromethyl)phenyl]pyridine-2,6-dicarboxamide
aKey Laboratory of Pesticide and Chemical Biology, College of Chemistry, Central China Normal University, Wuhan 430079, People's Republic of China.
*Correspondence e-mail: penghao@mail.ccnu.edu.cn
In the title molecule, C21H13F6N3O2, the pyridine ring forms dihedral angles of 1.7 (1) and 5.2 (1)° with the two benzene rings. In the intermolecular N—H⋯O hydrogen bonds and π⋯π interactions [centroid–centroid distance of 3.628 (3) Å between aromatic rings] link molecules into stacks along the c axis. The two trifluoromethyl groups are each rotationally disordered between two orientations, with occupancy ratios of 0.58 (1):0.42 (1) and 0.55 (1):0.45 (1).
Related literature
For the synthesis and biological activity of acyl thiourea derivatives, see: Duan et al. (2003); Li et al. (2007).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
https://doi.org/10.1107/S1600536810001753/cv2671sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810001753/cv2671Isup2.hkl
Pyridine-2,6-dicarbonyl chloride (II) was prepared according to the literature procedures (Duan et al., 2003). To a solution of (II) (5 mmol) in dichloromethane (30 ml) was added KSCN (15 mmol) and PEG-400 (0.2 g). The mixture was stirred at room temperature for 2 h, then 4-trifluoroaniline (10 mmol) was added and the suspension was stirred for 1 h. The mixture was filtered and the precipitate was washed with a little ethanol. The solvent was removed under reduced pressure and the residue was purified by recrystallization from DMF and water (20:1,v/v). Then recrystallization from actone over a period of one week gave colourless crystals of (I).
C-bound H atoms were geometrically positioned (C—H 0.93 Å) and refined as riding, with Uiso(H) =1.2Ueq(C). H atoms bonded to N atoms were located at the difference map, and refined with bond restrains N—H = 0.84 (3) Å, and with constrains of Uiso(H) = 1.2Ueq(N). Two trifluoromethyl groups were treated as rotationally disordered between two orientations each with the ratios refined to 0.58 (1):0.42 (1) and 0.55 (1):0.45 (1), respectively.
Acyl thiourea derivatives have attracted considerable attention from chemists and biologists because of their wide range of biological activities and potential therapeutic value (Duan et al., 2003; Li et al., 2007). In our research work aimed at searching for novel agrochemicals, we attempted to synthesize the pyridine-2,6-dicarbonyl thiourea derivatives,and the title compound, (I), was obtained as byproduct. Here we report its crystal structure.
In (I) (Fig.1), the central pyridine ring makes the dihedral angles of 1.7 (1) and 5.2 (1)° with the two benzene rings, respectively. In the π–π interactions proved by short distance of 3.628 (3) Å between the centroids of aromatic rings link molecules into stacks along axis c.
intermolecular N—H···O hydrogen bonds (Table 1) andFor the synthesis and biological activity of acyl thiourea derivatives, see: Duan et al. (2003); Li et al. (2007).
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).C21H13F6N3O2 | F(000) = 920 |
Mr = 453.34 | Dx = 1.525 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3607 reflections |
a = 9.8308 (10) Å | θ = 2.4–25.0° |
b = 23.787 (3) Å | µ = 0.14 mm−1 |
c = 8.9577 (10) Å | T = 298 K |
β = 109.474 (2)° | Block, colourless |
V = 1974.8 (4) Å3 | 0.20 × 0.12 × 0.10 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 3138 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.043 |
Graphite monochromator | θmax = 25.5°, θmin = 2.2° |
phi and ω scans | h = −11→11 |
12033 measured reflections | k = −28→22 |
3653 independent reflections | l = −10→10 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.078 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.181 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.17 | w = 1/[σ2(Fo2) + (0.0634P)2 + 1.4024P] where P = (Fo2 + 2Fc2)/3 |
3653 reflections | (Δ/σ)max = 0.001 |
351 parameters | Δρmax = 0.32 e Å−3 |
96 restraints | Δρmin = −0.25 e Å−3 |
C21H13F6N3O2 | V = 1974.8 (4) Å3 |
Mr = 453.34 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.8308 (10) Å | µ = 0.14 mm−1 |
b = 23.787 (3) Å | T = 298 K |
c = 8.9577 (10) Å | 0.20 × 0.12 × 0.10 mm |
β = 109.474 (2)° |
Bruker SMART CCD area-detector diffractometer | 3138 reflections with I > 2σ(I) |
12033 measured reflections | Rint = 0.043 |
3653 independent reflections |
R[F2 > 2σ(F2)] = 0.078 | 96 restraints |
wR(F2) = 0.181 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.17 | Δρmax = 0.32 e Å−3 |
3653 reflections | Δρmin = −0.25 e Å−3 |
351 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.1924 (3) | 0.17950 (12) | 0.0978 (3) | 0.0384 (7) | |
C2 | 0.1982 (4) | 0.12169 (14) | 0.1004 (4) | 0.0491 (8) | |
H2 | 0.1447 | 0.1009 | 0.1492 | 0.059* | |
C3 | 0.2849 (4) | 0.09535 (14) | 0.0289 (4) | 0.0557 (9) | |
H3 | 0.2902 | 0.0563 | 0.0282 | 0.067* | |
C4 | 0.3637 (3) | 0.12687 (13) | −0.0413 (4) | 0.0461 (8) | |
H4 | 0.4218 | 0.1097 | −0.0914 | 0.055* | |
C5 | 0.3546 (3) | 0.18462 (12) | −0.0356 (3) | 0.0356 (6) | |
C6 | 0.0990 (3) | 0.21071 (13) | 0.1728 (3) | 0.0400 (7) | |
C7 | −0.0025 (3) | 0.30625 (13) | 0.1730 (3) | 0.0394 (7) | |
C8 | −0.1031 (3) | 0.29432 (15) | 0.2475 (4) | 0.0498 (8) | |
H8 | −0.1244 | 0.2573 | 0.2643 | 0.060* | |
C9 | −0.1704 (3) | 0.33774 (17) | 0.2959 (4) | 0.0581 (9) | |
H9 | −0.2373 | 0.3298 | 0.3458 | 0.070* | |
C10 | −0.1409 (3) | 0.39243 (16) | 0.2721 (4) | 0.0565 (9) | |
C11 | −0.0435 (4) | 0.40445 (15) | 0.1948 (5) | 0.0620 (10) | |
H11 | −0.0236 | 0.4416 | 0.1772 | 0.074* | |
C12 | 0.0234 (4) | 0.36158 (14) | 0.1444 (4) | 0.0535 (9) | |
H12 | 0.0869 | 0.3698 | 0.0904 | 0.064* | |
C13 | −0.2060 (4) | 0.4394 (2) | 0.3348 (5) | 0.0853 (14) | |
C14 | 0.4430 (3) | 0.22150 (13) | −0.1048 (3) | 0.0377 (7) | |
C15 | 0.5242 (3) | 0.32122 (13) | −0.0892 (3) | 0.0400 (7) | |
C16 | 0.4878 (4) | 0.37330 (15) | −0.0475 (4) | 0.0564 (9) | |
H16 | 0.4215 | 0.3760 | 0.0057 | 0.068* | |
C17 | 0.5477 (4) | 0.42116 (16) | −0.0833 (5) | 0.0661 (10) | |
H17 | 0.5200 | 0.4561 | −0.0567 | 0.079* | |
C18 | 0.6488 (4) | 0.41772 (16) | −0.1585 (4) | 0.0599 (10) | |
C19 | 0.6873 (4) | 0.36594 (17) | −0.1989 (4) | 0.0620 (10) | |
H19 | 0.7560 | 0.3635 | −0.2492 | 0.074* | |
C20 | 0.6258 (3) | 0.31734 (15) | −0.1662 (4) | 0.0491 (8) | |
H20 | 0.6518 | 0.2825 | −0.1952 | 0.059* | |
C21 | 0.7100 (6) | 0.4701 (2) | −0.2000 (5) | 0.0930 (16) | |
N1 | 0.2702 (2) | 0.21094 (10) | 0.0320 (3) | 0.0357 (6) | |
N2 | 0.0727 (3) | 0.26423 (11) | 0.1232 (3) | 0.0430 (6) | |
H2A | 0.110 (4) | 0.2753 (14) | 0.057 (4) | 0.052* | |
N3 | 0.4573 (3) | 0.27437 (11) | −0.0487 (3) | 0.0442 (7) | |
H3A | 0.420 (4) | 0.2803 (14) | 0.022 (4) | 0.053* | |
O1 | 0.0553 (3) | 0.18852 (10) | 0.2706 (3) | 0.0663 (7) | |
O2 | 0.4942 (3) | 0.20366 (10) | −0.2017 (3) | 0.0566 (7) | |
F1 | −0.3471 (7) | 0.4321 (5) | 0.3055 (10) | 0.104 (3) | 0.55 (1) |
F2 | −0.1415 (10) | 0.4449 (5) | 0.4902 (8) | 0.130 (4) | 0.55 (1) |
F3 | −0.1944 (10) | 0.4899 (3) | 0.2690 (12) | 0.127 (4) | 0.55 (1) |
F4 | 0.7508 (11) | 0.5071 (4) | −0.0789 (9) | 0.143 (4) | 0.58 (1) |
F5 | 0.6273 (14) | 0.4946 (5) | −0.3320 (9) | 0.122 (4) | 0.58 (1) |
F6 | 0.8385 (8) | 0.4579 (5) | −0.2243 (14) | 0.133 (4) | 0.58 (1) |
F4' | 0.8527 (8) | 0.4711 (6) | −0.1667 (18) | 0.119 (5) | 0.45 (1) |
F1' | −0.3145 (10) | 0.4220 (6) | 0.3872 (14) | 0.130 (5) | 0.45 (1) |
F5' | 0.6697 (11) | 0.5178 (4) | −0.1386 (12) | 0.109 (3) | 0.45 (1) |
F3' | −0.1123 (11) | 0.4662 (5) | 0.4586 (11) | 0.088 (3) | 0.42 (1) |
F2' | −0.2616 (11) | 0.4801 (5) | 0.2255 (12) | 0.110 (4) | 0.42 (1) |
F6' | 0.6506 (17) | 0.4783 (6) | −0.3602 (9) | 0.102 (4) | 0.42 (1) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0394 (16) | 0.0387 (17) | 0.0408 (16) | −0.0035 (12) | 0.0182 (13) | −0.0019 (13) |
C2 | 0.0565 (19) | 0.0434 (19) | 0.0562 (19) | −0.0060 (15) | 0.0305 (16) | −0.0004 (15) |
C3 | 0.073 (2) | 0.0319 (17) | 0.072 (2) | 0.0011 (15) | 0.038 (2) | −0.0021 (16) |
C4 | 0.0534 (18) | 0.0430 (18) | 0.0489 (18) | 0.0050 (14) | 0.0265 (15) | −0.0026 (14) |
C5 | 0.0329 (14) | 0.0392 (16) | 0.0366 (15) | 0.0050 (12) | 0.0141 (12) | 0.0006 (12) |
C6 | 0.0395 (16) | 0.0422 (18) | 0.0456 (17) | −0.0055 (13) | 0.0240 (14) | −0.0025 (13) |
C7 | 0.0328 (15) | 0.0467 (18) | 0.0411 (16) | 0.0030 (13) | 0.0156 (13) | −0.0040 (13) |
C8 | 0.0390 (17) | 0.055 (2) | 0.063 (2) | 0.0000 (15) | 0.0275 (16) | −0.0046 (16) |
C9 | 0.0402 (18) | 0.079 (3) | 0.065 (2) | 0.0021 (17) | 0.0302 (17) | −0.0110 (19) |
C10 | 0.0404 (18) | 0.064 (2) | 0.066 (2) | 0.0063 (16) | 0.0181 (16) | −0.0184 (18) |
C11 | 0.053 (2) | 0.048 (2) | 0.089 (3) | 0.0048 (16) | 0.029 (2) | −0.0085 (19) |
C12 | 0.0492 (19) | 0.050 (2) | 0.071 (2) | 0.0047 (15) | 0.0340 (17) | 0.0023 (17) |
C13 | 0.063 (3) | 0.097 (4) | 0.100 (4) | 0.010 (3) | 0.033 (3) | −0.036 (3) |
C14 | 0.0383 (15) | 0.0421 (17) | 0.0366 (15) | 0.0093 (12) | 0.0176 (13) | 0.0027 (13) |
C15 | 0.0410 (16) | 0.0450 (18) | 0.0356 (15) | −0.0033 (13) | 0.0148 (13) | 0.0016 (13) |
C16 | 0.065 (2) | 0.052 (2) | 0.064 (2) | −0.0091 (17) | 0.0378 (19) | −0.0066 (17) |
C17 | 0.084 (3) | 0.047 (2) | 0.076 (3) | −0.0112 (19) | 0.039 (2) | −0.0073 (18) |
C18 | 0.069 (2) | 0.060 (2) | 0.051 (2) | −0.0187 (18) | 0.0202 (18) | 0.0026 (17) |
C19 | 0.062 (2) | 0.077 (3) | 0.059 (2) | −0.0150 (19) | 0.0363 (19) | 0.0027 (19) |
C20 | 0.0469 (18) | 0.054 (2) | 0.0533 (19) | −0.0017 (15) | 0.0264 (16) | 0.0008 (16) |
C21 | 0.127 (5) | 0.078 (4) | 0.087 (4) | −0.039 (3) | 0.053 (4) | 0.003 (3) |
N1 | 0.0353 (12) | 0.0357 (13) | 0.0395 (13) | 0.0021 (10) | 0.0172 (10) | 0.0003 (10) |
N2 | 0.0471 (15) | 0.0428 (16) | 0.0516 (15) | 0.0024 (11) | 0.0330 (13) | 0.0022 (12) |
N3 | 0.0548 (16) | 0.0436 (15) | 0.0489 (15) | −0.0040 (12) | 0.0371 (13) | −0.0027 (12) |
O1 | 0.0879 (18) | 0.0535 (15) | 0.0839 (18) | 0.0034 (13) | 0.0640 (16) | 0.0105 (13) |
O2 | 0.0733 (16) | 0.0520 (14) | 0.0635 (15) | 0.0044 (12) | 0.0482 (13) | −0.0026 (11) |
F1 | 0.063 (4) | 0.126 (6) | 0.131 (6) | 0.029 (4) | 0.044 (4) | −0.042 (5) |
F2 | 0.124 (7) | 0.159 (10) | 0.107 (5) | 0.023 (5) | 0.040 (5) | −0.073 (5) |
F3 | 0.128 (8) | 0.071 (4) | 0.203 (11) | 0.015 (5) | 0.084 (7) | −0.041 (6) |
F4 | 0.209 (10) | 0.102 (6) | 0.134 (6) | −0.089 (6) | 0.078 (7) | −0.024 (5) |
F5 | 0.175 (7) | 0.070 (7) | 0.137 (7) | −0.004 (4) | 0.072 (6) | 0.036 (5) |
F6 | 0.147 (7) | 0.129 (8) | 0.147 (8) | −0.095 (5) | 0.081 (5) | −0.024 (5) |
F4' | 0.115 (7) | 0.088 (7) | 0.157 (11) | −0.060 (5) | 0.049 (6) | −0.004 (7) |
F1' | 0.091 (7) | 0.134 (9) | 0.197 (12) | −0.011 (6) | 0.092 (7) | −0.084 (9) |
F5' | 0.168 (9) | 0.055 (4) | 0.127 (7) | −0.043 (5) | 0.082 (7) | −0.019 (5) |
F3' | 0.071 (4) | 0.078 (6) | 0.111 (7) | 0.003 (4) | 0.024 (5) | −0.050 (4) |
F2' | 0.097 (8) | 0.094 (8) | 0.118 (6) | 0.052 (6) | 0.007 (6) | −0.025 (6) |
F6' | 0.171 (10) | 0.067 (8) | 0.090 (6) | −0.008 (5) | 0.075 (6) | 0.022 (4) |
C1—N1 | 1.339 (4) | C13—F3' | 1.342 (8) |
C1—C2 | 1.376 (4) | C13—F2' | 1.355 (8) |
C1—C6 | 1.502 (4) | C13—F3 | 1.358 (7) |
C2—C3 | 1.376 (4) | C13—F1' | 1.365 (8) |
C2—H2 | 0.9300 | C14—O2 | 1.216 (3) |
C3—C4 | 1.372 (4) | C14—N3 | 1.344 (4) |
C3—H3 | 0.9300 | C15—C16 | 1.375 (5) |
C4—C5 | 1.379 (4) | C15—C20 | 1.393 (4) |
C4—H4 | 0.9300 | C15—N3 | 1.402 (4) |
C5—N1 | 1.335 (3) | C16—C17 | 1.368 (5) |
C5—C14 | 1.506 (4) | C16—H16 | 0.9300 |
C6—O1 | 1.217 (3) | C17—C18 | 1.377 (5) |
C6—N2 | 1.345 (4) | C17—H17 | 0.9300 |
C7—C12 | 1.381 (5) | C18—C19 | 1.372 (5) |
C7—C8 | 1.394 (4) | C18—C21 | 1.484 (5) |
C7—N2 | 1.402 (4) | C19—C20 | 1.380 (5) |
C8—C9 | 1.373 (5) | C19—H19 | 0.9300 |
C8—H8 | 0.9300 | C20—H20 | 0.9300 |
C9—C10 | 1.365 (5) | C21—F5 | 1.326 (8) |
C9—H9 | 0.9300 | C21—F4' | 1.334 (8) |
C10—C11 | 1.386 (5) | C21—F4 | 1.350 (7) |
C10—C13 | 1.488 (5) | C21—F6' | 1.371 (8) |
C11—C12 | 1.369 (5) | C21—F5' | 1.375 (8) |
C11—H11 | 0.9300 | C21—F6 | 1.383 (8) |
C12—H12 | 0.9300 | N2—H2A | 0.84 (3) |
C13—F2 | 1.330 (7) | N3—H3A | 0.85 (4) |
C13—F1 | 1.335 (7) | ||
N1—C1—C2 | 122.6 (3) | F3'—C13—C10 | 113.9 (6) |
N1—C1—C6 | 116.4 (2) | F2'—C13—C10 | 112.7 (7) |
C2—C1—C6 | 120.9 (3) | F3—C13—C10 | 113.1 (6) |
C1—C2—C3 | 118.4 (3) | F1'—C13—C10 | 112.7 (7) |
C1—C2—H2 | 120.8 | O2—C14—N3 | 125.2 (3) |
C3—C2—H2 | 120.8 | O2—C14—C5 | 121.6 (3) |
C4—C3—C2 | 119.8 (3) | N3—C14—C5 | 113.2 (2) |
C4—C3—H3 | 120.1 | C16—C15—C20 | 119.2 (3) |
C2—C3—H3 | 120.1 | C16—C15—N3 | 117.3 (3) |
C3—C4—C5 | 118.3 (3) | C20—C15—N3 | 123.5 (3) |
C3—C4—H4 | 120.8 | C17—C16—C15 | 121.0 (3) |
C5—C4—H4 | 120.8 | C17—C16—H16 | 119.5 |
N1—C5—C4 | 122.8 (3) | C15—C16—H16 | 119.5 |
N1—C5—C14 | 116.4 (2) | C16—C17—C18 | 120.2 (4) |
C4—C5—C14 | 120.8 (3) | C16—C17—H17 | 119.9 |
O1—C6—N2 | 125.0 (3) | C18—C17—H17 | 119.9 |
O1—C6—C1 | 121.5 (3) | C19—C18—C17 | 119.3 (3) |
N2—C6—C1 | 113.5 (2) | C19—C18—C21 | 121.2 (4) |
C12—C7—C8 | 119.1 (3) | C17—C18—C21 | 119.4 (4) |
C12—C7—N2 | 118.1 (3) | C18—C19—C20 | 121.1 (3) |
C8—C7—N2 | 122.7 (3) | C18—C19—H19 | 119.4 |
C9—C8—C7 | 119.5 (3) | C20—C19—H19 | 119.4 |
C9—C8—H8 | 120.3 | C19—C20—C15 | 119.1 (3) |
C7—C8—H8 | 120.3 | C19—C20—H20 | 120.4 |
C10—C9—C8 | 121.2 (3) | C15—C20—H20 | 120.4 |
C10—C9—H9 | 119.4 | F5—C21—F4' | 118.5 (12) |
C8—C9—H9 | 119.4 | F5—C21—F4 | 111.1 (7) |
C9—C10—C11 | 119.6 (3) | F4'—C21—F4 | 78.5 (7) |
C9—C10—C13 | 121.1 (3) | F5—C21—F6' | 23.6 (8) |
C11—C10—C13 | 119.3 (4) | F4'—C21—F6' | 106.3 (8) |
C12—C11—C10 | 119.9 (3) | F4—C21—F6' | 131.1 (9) |
C12—C11—H11 | 120.0 | F5—C21—F5' | 79.7 (7) |
C10—C11—H11 | 120.0 | F4'—C21—F5' | 108.5 (7) |
C11—C12—C7 | 120.7 (3) | F4—C21—F5' | 35.8 (6) |
C11—C12—H12 | 119.7 | F6'—C21—F5' | 102.9 (7) |
C7—C12—H12 | 119.7 | F5—C21—F6 | 105.8 (7) |
F2—C13—F1 | 108.7 (6) | F4'—C21—F6 | 24.6 (7) |
F2—C13—F3' | 29.8 (7) | F4—C21—F6 | 102.8 (6) |
F1—C13—F3' | 127.3 (8) | F6'—C21—F6 | 87.6 (10) |
F2—C13—F2' | 128.5 (8) | F5'—C21—F6 | 129.5 (7) |
F1—C13—F2' | 79.0 (7) | F5—C21—C18 | 114.4 (8) |
F3'—C13—F2' | 105.0 (7) | F4'—C21—C18 | 116.3 (8) |
F2—C13—F3 | 106.7 (6) | F4—C21—C18 | 112.5 (6) |
F1—C13—F3 | 105.2 (6) | F6'—C21—C18 | 108.3 (8) |
F3'—C13—F3 | 78.8 (7) | F5'—C21—C18 | 113.5 (6) |
F2'—C13—F3 | 29.3 (5) | F6—C21—C18 | 109.3 (6) |
F2—C13—F1' | 79.9 (7) | C5—N1—C1 | 118.1 (2) |
F1—C13—F1' | 31.5 (6) | C6—N2—C7 | 129.3 (3) |
F3'—C13—F1' | 105.0 (7) | C6—N2—H2A | 117 (2) |
F2'—C13—F1' | 106.9 (7) | C7—N2—H2A | 114 (2) |
F3—C13—F1' | 127.2 (8) | C14—N3—C15 | 130.2 (3) |
F2—C13—C10 | 110.7 (6) | C14—N3—H3A | 115 (2) |
F1—C13—C10 | 112.1 (6) | C15—N3—H3A | 115 (2) |
N1—C1—C2—C3 | −1.6 (5) | C4—C5—C14—N3 | −160.5 (3) |
C6—C1—C2—C3 | 179.6 (3) | C20—C15—C16—C17 | 1.3 (5) |
C1—C2—C3—C4 | 0.5 (5) | N3—C15—C16—C17 | −179.7 (3) |
C2—C3—C4—C5 | 0.9 (5) | C15—C16—C17—C18 | −1.7 (6) |
C3—C4—C5—N1 | −1.5 (5) | C16—C17—C18—C19 | 0.9 (6) |
C3—C4—C5—C14 | 177.6 (3) | C16—C17—C18—C21 | 178.5 (4) |
N1—C1—C6—O1 | −159.9 (3) | C17—C18—C19—C20 | 0.3 (6) |
C2—C1—C6—O1 | 19.0 (5) | C21—C18—C19—C20 | −177.2 (4) |
N1—C1—C6—N2 | 18.9 (4) | C18—C19—C20—C15 | −0.7 (5) |
C2—C1—C6—N2 | −162.2 (3) | C16—C15—C20—C19 | 0.0 (5) |
C12—C7—C8—C9 | −2.3 (5) | N3—C15—C20—C19 | −179.0 (3) |
N2—C7—C8—C9 | 178.7 (3) | C19—C18—C21—F5 | 96.4 (7) |
C7—C8—C9—C10 | 0.1 (5) | C17—C18—C21—F5 | −81.2 (7) |
C8—C9—C10—C11 | 1.3 (5) | C19—C18—C21—F4' | −47.7 (8) |
C8—C9—C10—C13 | −175.6 (3) | C17—C18—C21—F4' | 134.7 (8) |
C9—C10—C11—C12 | −0.6 (5) | C19—C18—C21—F4 | −135.6 (6) |
C13—C10—C11—C12 | 176.3 (4) | C17—C18—C21—F4 | 46.8 (7) |
C10—C11—C12—C7 | −1.5 (5) | C19—C18—C21—F6' | 71.8 (8) |
C8—C7—C12—C11 | 3.0 (5) | C17—C18—C21—F6' | −105.7 (7) |
N2—C7—C12—C11 | −178.0 (3) | C19—C18—C21—F5' | −174.6 (6) |
C9—C10—C13—F2 | 75.5 (6) | C17—C18—C21—F5' | 7.8 (7) |
C11—C10—C13—F2 | −101.4 (6) | C19—C18—C21—F6 | −22.1 (7) |
C9—C10—C13—F1 | −46.1 (7) | C17—C18—C21—F6 | 160.3 (6) |
C11—C10—C13—F1 | 137.0 (6) | C4—C5—N1—C1 | 0.6 (4) |
C9—C10—C13—F3' | 107.6 (7) | C14—C5—N1—C1 | −178.6 (2) |
C11—C10—C13—F3' | −69.4 (7) | C2—C1—N1—C5 | 1.0 (4) |
C9—C10—C13—F2' | −133.0 (6) | C6—C1—N1—C5 | 179.9 (2) |
C11—C10—C13—F2' | 50.1 (7) | O1—C6—N2—C7 | 2.6 (5) |
C9—C10—C13—F3 | −164.8 (6) | C1—C6—N2—C7 | −176.2 (3) |
C11—C10—C13—F3 | 18.2 (7) | C12—C7—N2—C6 | 159.3 (3) |
C9—C10—C13—F1' | −11.9 (7) | C8—C7—N2—C6 | −21.7 (5) |
C11—C10—C13—F1' | 171.2 (6) | O2—C14—N3—C15 | 3.4 (5) |
N1—C5—C14—O2 | −161.2 (3) | C5—C14—N3—C15 | −176.4 (3) |
C4—C5—C14—O2 | 19.7 (4) | C16—C15—N3—C14 | 161.7 (3) |
N1—C5—C14—N3 | 18.6 (4) | C20—C15—N3—C14 | −19.3 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1i | 0.84 (3) | 2.58 (3) | 3.303 (4) | 144 (3) |
N3—H3A···O2ii | 0.85 (4) | 2.36 (4) | 3.051 (3) | 139 (3) |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H13F6N3O2 |
Mr | 453.34 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 9.8308 (10), 23.787 (3), 8.9577 (10) |
β (°) | 109.474 (2) |
V (Å3) | 1974.8 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.20 × 0.12 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12033, 3653, 3138 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.078, 0.181, 1.17 |
No. of reflections | 3653 |
No. of parameters | 351 |
No. of restraints | 96 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.32, −0.25 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1i | 0.84 (3) | 2.58 (3) | 3.303 (4) | 144 (3) |
N3—H3A···O2ii | 0.85 (4) | 2.36 (4) | 3.051 (3) | 139 (3) |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, −y+1/2, z+1/2. |
Acknowledgements
We gratefully acknowledge the financial support of this work by the Opening Foundation of the Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University (grant No. 2009GDGP0101), the National Basic Research Program of China (2010CB126100) and the National Natural Science Foundation of China (No. 20772042).
References
Bruker (2001). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Duan, Z. F., Gu, L. Q., Huang, Z. S., Xie, W. L. & Ma, L. (2003). Chin. J. Appl. Chem. 20, 80–82. CAS Google Scholar
Li, Y. J., Zhang, Z. G., Jin, K., Peng, Q. J., Ding, W. G. & Liu, J. (2007). Acta Chim. Sin. 65, 834–840. CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Acyl thiourea derivatives have attracted considerable attention from chemists and biologists because of their wide range of biological activities and potential therapeutic value (Duan et al., 2003; Li et al., 2007). In our research work aimed at searching for novel agrochemicals, we attempted to synthesize the pyridine-2,6-dicarbonyl thiourea derivatives,and the title compound, (I), was obtained as byproduct. Here we report its crystal structure.
In (I) (Fig.1), the central pyridine ring makes the dihedral angles of 1.7 (1) and 5.2 (1)° with the two benzene rings, respectively. In the crystal structure, intermolecular N—H···O hydrogen bonds (Table 1) and π–π interactions proved by short distance of 3.628 (3) Å between the centroids of aromatic rings link molecules into stacks along axis c.