metal-organic compounds
catena-Poly[[[diaquacopper(II)]-bis(μ2-di-4-pyridyl disulfide-κ2N:N′)] bis(hydrogen phthalate) monohydrate]
aState Key Laboratory Base of Novel Functional Materials and Preparation Science, Center of Applied Solid State Chemistry Research, Ningbo University, Ningbo, Zhejiang 315211, People's Republic of China
*Correspondence e-mail: linjianli@nbu.edu.cn
The 10H8N2S2)2(H2O)2](C8H5O4)2·H2O}n, contains one CuII ion, two bridging di-4-pyridyl disulfide (4-DPDS) ligands of the same two coordinating water molecules, two hydrogen phthalate anions and one uncoordinated water molecule. The polymeric structure consists of two types of polymeric chains, each composed from repeated chiral rhomboids. The CuII ions adopt a distorted octahedral coordination geometry and are coordinated by four pyridine N atoms and two water O atoms. The coordinated water molecules and hydrogen phthalate anions are located between the repeated rhomboidal chains, and form hydrogen bonds with the coordinated water molecules.
of the title compound, {[Cu(CRelated literature
For general background to 4,4′-dipyridyldisulfide, see Horikoshi & Mochida (2006). For coordination complexes with the title ligand, see: Manna et al. (2005, 2007); Luo et al. (2003).
Experimental
Crystal data
|
Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810001716/cv2686sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810001716/cv2686Isup2.hkl
Dropwise addition of 0.5 ml 1.0 M NaOH to a aqueous solution of Cu(NO3)2.3H2O (0.0603 g, 0.25 mmol) in 4 ml H2O produced the blue precipitate, which was then centrifuged and washed with double-distilled water four times. The precipitate was subsequently moved to a stirred suspension of phthalic acid (0.0510 g, 0.25 mmol) and DPDS (4,4'-dipyridinedisulfide) (0.0575 g, 0.25 mmol) in 30 ml hot water. The mixture was further stirred for 30 min and the insoluble solid was filtere off. The colourless filtrate was allowed to stand at the room temperature. Slow evaporation for about a month afforded a small amount of blue block crystals.
H atoms bonded to C atoms were geometrically positioned and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C). H atoms attached to O atoms were found in a difference Fourier synthesis and were refined using a riding model, with the O—H distances fixed as initially found and with Uiso(H) values set at 1.2 Ueq(O).
Over past few years, the 4,4'-dipyridyldisulfide has received considerable attention due to both its conformational flexibility and axial
(Horikoshi & Mochida, 2006). A large number of metal coordination networks have been reported by using these ligands only or in combination with suitable anions (Manna et al., 2005, 2007; Luo et al., 2003). In this contribution, we report the synthesis and of the title compound.The
of the title compound, {[Cu(4-DPDS)2(H2O)2].2(C8H5O4)-.H2O}n (4-DPDS = 4,4'-dipyridinedisulfide),contains one CuII ion, two bridging 4-DPDS ligands of the same two coordinating water molecules, two hydrogen phthalate anions and one lattice water molecule (Fig. 1). The copper atoms are each coordinated by four pyridine nitrogen atoms and two aqua ligands to complete an elongated octahedral CuN4O2 chromophore of "4 + 2" coordination type due to Jahn-Teller effect. The equatorial positions are occupied by four N toms of four 4-DPDS ligands, and the axial ones by two aqua O atoms. The Cu—O distances of 2.513 (3) Å and 2.438 (3) Å are significantly larger than those to the nitrogen atoms (Cu—N = 2.031 (3)–2.054 (3) Å), indicating a weak coordination capability of the aqua ligand. The cis and trans N—Cu—N angles fall in the regions 88.97 (9)–90.99 (9)° and 173.34 (13)–176.78 (12)°, respectively, exhibiting small deviation from the corresponding values for a regular geometry. The bond lengths (with the Cu atoms) are all within the normal ranges (Manna et al., 2007).The Cu atoms are bridged by four 4-DPDS ligands to form one-dimensional double–stranded chains extending in the [010] direction. The one-dimensional chains with respect to the neighbour are close-packed in ···ABAB··· sequence (Fig. 2). Despite the Cu—Cu distance spanned by the two 4-DPDS are 10.732 (2) Å, but no similar mesoporous structure form, because the HL- anions and lattice H2O molecule reside in cavities in the one-dimensional chain metallacycle. The HL- anions play a role in balancing in charge, the carboxylic –COOH groups favor formation of strong intramolecular hydrogen bond to carboxylate O6 atom and O11 atom, and the lattice H2O molecule form hydrogen bonds to two HL- ainions. The distance of S—S between adjacent chains is 5.17 (1) Å, which is much greater than van der waals distance (3.7 Å), shows that there is no S—S weak interaction.The chains are linked via those interchain hydrogen bonds between the aqua ligand and the carboxylate atoms (Table 1) into two-dimensional layers (Fig. 3).
For general background to 4,4'-dipyridyldisulfide, see Horikoshi & Mochida (2006). For coordination complexes with the title ligand, see: Manna et al. (2005, 2007); Luo et al. (2003).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The content of asymmetric unit showing the atomic numbering and 45% probability dispalcement ellipsoids [symmetry code: (i) x, y + 1, z]. Most of H-atoms omitted for clarity | |
Fig. 2. A portion of the crystal packing viewed along axis c and showing the polymeric chains composed from the CuII ions and 4,4'-DPDS ligands. Anions and lattice water molecules were omitted for clarity. | |
Fig. 3. A portion of the crystal packing viewed along axis b and showing O—H···O hydrogen bonds as dashed lines. |
[Cu(C10H8N2S2)2(H2O)2](C8H5O4)2·H2O | F(000) = 1828 |
Mr = 888.44 | Dx = 1.576 Mg m−3 |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | Cell parameters from 34124 reflections |
a = 20.253 (4) Å | θ = 3.0–27.5° |
b = 10.732 (2) Å | µ = 0.88 mm−1 |
c = 17.228 (3) Å | T = 295 K |
V = 3744.6 (13) Å3 | Chip, blue |
Z = 4 | 0.40 × 0.13 × 0.12 mm |
Rigaku R-AXIS RAPID diffractometer | 8513 independent reflections |
Radiation source: fine-focus sealed tube | 5968 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.077 |
Detector resolution: 0 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
ω scan | h = −26→25 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −13→12 |
Tmin = 0.870, Tmax = 0.901 | l = −22→22 |
34124 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.045 | H-atom parameters constrained |
wR(F2) = 0.081 | w = 1/[σ2(Fo2) + (0.0297P)2 + 0.2143P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.004 |
8513 reflections | Δρmax = 0.25 e Å−3 |
506 parameters | Δρmin = −0.32 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 4088 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.00 (7) |
[Cu(C10H8N2S2)2(H2O)2](C8H5O4)2·H2O | V = 3744.6 (13) Å3 |
Mr = 888.44 | Z = 4 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 20.253 (4) Å | µ = 0.88 mm−1 |
b = 10.732 (2) Å | T = 295 K |
c = 17.228 (3) Å | 0.40 × 0.13 × 0.12 mm |
Rigaku R-AXIS RAPID diffractometer | 8513 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 5968 reflections with I > 2σ(I) |
Tmin = 0.870, Tmax = 0.901 | Rint = 0.077 |
34124 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | H-atom parameters constrained |
wR(F2) = 0.081 | Δρmax = 0.25 e Å−3 |
S = 1.02 | Δρmin = −0.32 e Å−3 |
8513 reflections | Absolute structure: Flack (1983), 4088 Friedel pairs |
506 parameters | Absolute structure parameter: 0.00 (7) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu | 0.419363 (19) | 0.57242 (3) | 0.25910 (3) | 0.03533 (11) | |
N1 | 0.35058 (13) | 0.4380 (2) | 0.27778 (17) | 0.0352 (7) | |
C1 | 0.32045 (18) | 0.4283 (3) | 0.3466 (2) | 0.0414 (9) | |
H1A | 0.3299 | 0.4871 | 0.3846 | 0.050* | |
C2 | 0.27606 (18) | 0.3352 (3) | 0.3638 (2) | 0.0423 (9) | |
H2A | 0.2559 | 0.3322 | 0.4123 | 0.051* | |
C3 | 0.26177 (16) | 0.2469 (3) | 0.3089 (2) | 0.0317 (8) | |
C4 | 0.29200 (18) | 0.2565 (3) | 0.2372 (2) | 0.0422 (9) | |
H4A | 0.2833 | 0.1987 | 0.1983 | 0.051* | |
C5 | 0.33519 (18) | 0.3531 (3) | 0.2245 (2) | 0.0459 (10) | |
H5A | 0.3548 | 0.3596 | 0.1758 | 0.055* | |
S1 | 0.20343 (4) | 0.13124 (8) | 0.33513 (6) | 0.0442 (2) | |
S2 | 0.19610 (4) | 0.01528 (8) | 0.24265 (6) | 0.0455 (3) | |
C6 | 0.29384 (16) | −0.3035 (3) | 0.2225 (2) | 0.0358 (8) | |
H6A | 0.2874 | −0.3766 | 0.1945 | 0.043* | |
C7 | 0.24750 (15) | −0.2108 (3) | 0.2161 (2) | 0.0359 (9) | |
H7A | 0.2110 | −0.2204 | 0.1839 | 0.043* | |
C8 | 0.25621 (15) | −0.1028 (3) | 0.2586 (3) | 0.0337 (8) | |
C9 | 0.31050 (16) | −0.0918 (3) | 0.3058 (2) | 0.0348 (8) | |
H9A | 0.3171 | −0.0205 | 0.3356 | 0.042* | |
C10 | 0.35480 (16) | −0.1884 (3) | 0.3081 (2) | 0.0343 (8) | |
H10A | 0.3917 | −0.1802 | 0.3398 | 0.041* | |
N2 | 0.34792 (11) | −0.2942 (2) | 0.26704 (19) | 0.0323 (6) | |
N3 | 0.48781 (13) | 0.4353 (2) | 0.23799 (18) | 0.0375 (7) | |
C11 | 0.49242 (17) | 0.3287 (3) | 0.2780 (2) | 0.0442 (10) | |
H11A | 0.4667 | 0.3192 | 0.3224 | 0.053* | |
C12 | 0.53371 (16) | 0.2320 (3) | 0.2564 (3) | 0.0433 (9) | |
H12A | 0.5361 | 0.1603 | 0.2866 | 0.052* | |
C13 | 0.57126 (15) | 0.2425 (3) | 0.1901 (2) | 0.0338 (8) | |
C14 | 0.56681 (15) | 0.3531 (3) | 0.1478 (2) | 0.0350 (8) | |
H14A | 0.5912 | 0.3642 | 0.1026 | 0.042* | |
C15 | 0.52524 (16) | 0.4454 (3) | 0.1747 (2) | 0.0385 (9) | |
H15A | 0.5232 | 0.5195 | 0.1468 | 0.046* | |
S3 | 0.62621 (4) | 0.12937 (8) | 0.15263 (6) | 0.0439 (2) | |
S4 | 0.64454 (4) | 0.01289 (8) | 0.24275 (6) | 0.0450 (3) | |
C16 | 0.48282 (16) | −0.1984 (3) | 0.1973 (2) | 0.0348 (8) | |
H16A | 0.4458 | −0.1968 | 0.1653 | 0.042* | |
C17 | 0.52745 (17) | −0.1020 (3) | 0.1922 (2) | 0.0406 (9) | |
H17A | 0.5204 | −0.0364 | 0.1580 | 0.049* | |
C18 | 0.58314 (16) | −0.1044 (3) | 0.2391 (2) | 0.0350 (9) | |
C19 | 0.59177 (16) | −0.2049 (3) | 0.2884 (2) | 0.0384 (9) | |
H19A | 0.6290 | −0.2096 | 0.3200 | 0.046* | |
C20 | 0.54505 (16) | −0.2978 (3) | 0.2905 (2) | 0.0380 (9) | |
H20A | 0.5515 | −0.3651 | 0.3236 | 0.046* | |
N4 | 0.49040 (12) | −0.2948 (2) | 0.24643 (19) | 0.0328 (7) | |
O1 | 0.40118 (12) | 0.5777 (2) | 0.11927 (16) | 0.0486 (7) | |
HW1 | 0.4278 | 0.5412 | 0.0925 | 0.073* | |
HW2 | 0.3717 | 0.6234 | 0.1060 | 0.073* | |
O2 | 0.43965 (13) | 0.6061 (2) | 0.40149 (16) | 0.0542 (7) | |
H2C | 0.4576 | 0.5521 | 0.4193 | 0.081* | |
H2D | 0.4114 | 0.6375 | 0.4277 | 0.081* | |
O3 | 0.18807 (13) | 0.1902 (3) | 0.53050 (18) | 0.0614 (8) | |
H3C | 0.2246 | 0.1603 | 0.5294 | 0.092* | |
H3D | 0.1909 | 0.2582 | 0.5422 | 0.092* | |
O4 | 0.69101 (15) | 0.9223 (3) | −0.0056 (3) | 0.0932 (13) | |
O5 | 0.65614 (15) | 0.7585 (4) | 0.0559 (2) | 0.0996 (13) | |
H5C | 0.6245 | 0.7070 | 0.0509 | 0.149* | |
C27 | 0.6463 (2) | 0.8540 (4) | 0.0128 (3) | 0.0566 (11) | |
C21 | 0.57687 (18) | 0.8814 (3) | −0.0151 (2) | 0.0421 (9) | |
C22 | 0.52332 (18) | 0.7981 (3) | −0.0218 (2) | 0.0426 (9) | |
C23 | 0.46327 (19) | 0.8428 (4) | −0.0462 (2) | 0.0520 (11) | |
H23A | 0.4277 | 0.7885 | −0.0499 | 0.062* | |
C24 | 0.4545 (2) | 0.9676 (4) | −0.0656 (3) | 0.0579 (11) | |
H24A | 0.4133 | 0.9961 | −0.0816 | 0.069* | |
C25 | 0.5070 (2) | 1.0483 (4) | −0.0610 (3) | 0.0547 (11) | |
H25A | 0.5016 | 1.1318 | −0.0740 | 0.066* | |
C26 | 0.5675 (2) | 1.0050 (3) | −0.0370 (2) | 0.0499 (10) | |
H26A | 0.6031 | 1.0597 | −0.0354 | 0.060* | |
C28 | 0.5238 (3) | 0.6591 (4) | −0.0040 (3) | 0.0680 (15) | |
O6 | 0.56712 (19) | 0.6184 (4) | 0.0433 (3) | 0.1161 (17) | |
O7 | 0.48227 (18) | 0.5928 (3) | −0.0343 (3) | 0.0952 (13) | |
O8 | 0.30452 (14) | 0.5485 (3) | 0.52104 (19) | 0.0687 (9) | |
H8C | 0.2702 | 0.5089 | 0.5380 | 0.103* | |
O9 | 0.33393 (14) | 0.7296 (3) | 0.4778 (2) | 0.0710 (9) | |
C35 | 0.2903 (2) | 0.6610 (4) | 0.5027 (2) | 0.0478 (10) | |
C29 | 0.21993 (17) | 0.7079 (3) | 0.5099 (2) | 0.0379 (8) | |
C30 | 0.16576 (17) | 0.6471 (3) | 0.5444 (2) | 0.0377 (9) | |
C31 | 0.10515 (19) | 0.7074 (4) | 0.5451 (2) | 0.0482 (10) | |
H31A | 0.0696 | 0.6688 | 0.5693 | 0.058* | |
C32 | 0.0956 (2) | 0.8229 (3) | 0.5111 (3) | 0.0527 (11) | |
H32A | 0.0540 | 0.8596 | 0.5105 | 0.063* | |
C33 | 0.1488 (2) | 0.8823 (4) | 0.4782 (3) | 0.0539 (11) | |
H33A | 0.1436 | 0.9605 | 0.4558 | 0.065* | |
C34 | 0.2096 (2) | 0.8260 (3) | 0.4787 (2) | 0.0490 (10) | |
H34A | 0.2453 | 0.8683 | 0.4573 | 0.059* | |
C36 | 0.1630 (2) | 0.5172 (4) | 0.5815 (3) | 0.0543 (11) | |
O10 | 0.11684 (16) | 0.4905 (3) | 0.6230 (2) | 0.0873 (11) | |
O11 | 0.20996 (16) | 0.4401 (3) | 0.5653 (2) | 0.0775 (10) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu | 0.03143 (18) | 0.02371 (17) | 0.0508 (3) | −0.00042 (18) | 0.0054 (2) | 0.0016 (2) |
N1 | 0.0402 (15) | 0.0293 (14) | 0.036 (2) | 0.0017 (13) | 0.0073 (14) | 0.0007 (14) |
C1 | 0.048 (2) | 0.0368 (19) | 0.039 (2) | −0.0102 (18) | 0.0013 (18) | −0.0095 (18) |
C2 | 0.053 (2) | 0.0400 (19) | 0.034 (2) | −0.0096 (18) | 0.0133 (18) | −0.0055 (17) |
C3 | 0.0290 (18) | 0.0254 (16) | 0.041 (2) | 0.0015 (14) | −0.0044 (16) | 0.0034 (16) |
C4 | 0.057 (2) | 0.0356 (18) | 0.034 (2) | −0.0093 (16) | 0.0065 (19) | −0.0097 (16) |
C5 | 0.056 (2) | 0.044 (2) | 0.037 (2) | −0.0084 (19) | 0.0142 (19) | −0.0073 (18) |
S1 | 0.0399 (5) | 0.0312 (4) | 0.0614 (7) | −0.0034 (4) | 0.0134 (5) | 0.0008 (5) |
S2 | 0.0371 (5) | 0.0307 (4) | 0.0687 (8) | 0.0029 (4) | −0.0144 (5) | −0.0018 (5) |
C6 | 0.0362 (19) | 0.0324 (18) | 0.039 (2) | −0.0068 (15) | 0.0018 (17) | −0.0039 (16) |
C7 | 0.0314 (18) | 0.0315 (17) | 0.045 (2) | −0.0046 (15) | −0.0047 (16) | −0.0037 (16) |
C8 | 0.0334 (16) | 0.0278 (16) | 0.040 (2) | −0.0037 (14) | 0.0005 (19) | 0.0023 (18) |
C9 | 0.0370 (19) | 0.0266 (17) | 0.041 (2) | 0.0004 (15) | −0.0051 (16) | −0.0080 (16) |
C10 | 0.0309 (18) | 0.0353 (19) | 0.037 (2) | −0.0018 (16) | −0.0049 (16) | −0.0058 (17) |
N2 | 0.0307 (14) | 0.0301 (13) | 0.0362 (18) | −0.0018 (11) | 0.0018 (14) | 0.0007 (14) |
N3 | 0.0365 (15) | 0.0293 (14) | 0.047 (2) | −0.0005 (12) | 0.0062 (14) | 0.0027 (14) |
C11 | 0.052 (2) | 0.0352 (18) | 0.046 (3) | 0.0056 (17) | 0.0127 (19) | 0.0110 (17) |
C12 | 0.050 (2) | 0.0301 (16) | 0.050 (2) | 0.0062 (15) | 0.009 (2) | 0.012 (2) |
C13 | 0.0305 (18) | 0.0291 (16) | 0.042 (2) | −0.0005 (14) | 0.0045 (18) | 0.0031 (16) |
C14 | 0.0297 (17) | 0.0367 (18) | 0.039 (2) | 0.0001 (14) | 0.0087 (16) | 0.0028 (16) |
C15 | 0.0366 (19) | 0.0316 (18) | 0.047 (3) | −0.0022 (15) | 0.0019 (18) | 0.0120 (17) |
S3 | 0.0418 (5) | 0.0314 (4) | 0.0584 (7) | 0.0026 (4) | 0.0124 (5) | 0.0026 (4) |
S4 | 0.0316 (4) | 0.0300 (4) | 0.0734 (8) | −0.0020 (3) | −0.0050 (5) | 0.0051 (5) |
C16 | 0.0304 (18) | 0.0295 (16) | 0.044 (2) | −0.0040 (14) | −0.0013 (17) | 0.0054 (17) |
C17 | 0.041 (2) | 0.0324 (18) | 0.048 (2) | 0.0023 (16) | 0.0015 (18) | 0.0096 (17) |
C18 | 0.0297 (15) | 0.0240 (14) | 0.051 (3) | 0.0028 (15) | 0.0039 (17) | −0.0019 (15) |
C19 | 0.0311 (18) | 0.0360 (18) | 0.048 (2) | 0.0010 (15) | −0.0037 (16) | −0.0010 (17) |
C20 | 0.0315 (18) | 0.0322 (18) | 0.050 (3) | 0.0048 (16) | 0.0016 (17) | 0.0061 (16) |
N4 | 0.0312 (13) | 0.0237 (12) | 0.044 (2) | 0.0039 (11) | 0.0003 (15) | 0.0040 (14) |
O1 | 0.0451 (14) | 0.0537 (16) | 0.0470 (17) | 0.0114 (12) | 0.0003 (13) | −0.0071 (14) |
O2 | 0.0470 (15) | 0.0574 (16) | 0.058 (2) | 0.0032 (14) | 0.0009 (14) | 0.0067 (14) |
O3 | 0.0564 (17) | 0.0610 (17) | 0.067 (2) | −0.0052 (15) | 0.0131 (15) | −0.0041 (16) |
O4 | 0.0556 (19) | 0.0593 (19) | 0.165 (4) | −0.0057 (16) | −0.005 (2) | 0.012 (2) |
O5 | 0.079 (2) | 0.122 (3) | 0.098 (3) | 0.011 (2) | −0.022 (2) | 0.058 (2) |
C27 | 0.055 (3) | 0.056 (3) | 0.059 (3) | 0.013 (2) | 0.002 (2) | 0.002 (2) |
C21 | 0.052 (2) | 0.0399 (19) | 0.034 (2) | 0.0076 (18) | 0.0094 (19) | 0.0007 (16) |
C22 | 0.049 (2) | 0.040 (2) | 0.039 (2) | 0.0035 (18) | 0.0159 (19) | −0.0022 (18) |
C23 | 0.051 (2) | 0.051 (2) | 0.054 (3) | −0.001 (2) | 0.013 (2) | −0.003 (2) |
C24 | 0.054 (3) | 0.061 (3) | 0.059 (3) | 0.016 (2) | 0.006 (2) | −0.003 (2) |
C25 | 0.069 (3) | 0.040 (2) | 0.055 (3) | 0.013 (2) | 0.006 (2) | 0.002 (2) |
C26 | 0.058 (3) | 0.042 (2) | 0.050 (3) | −0.0017 (19) | 0.013 (2) | 0.0001 (19) |
C28 | 0.068 (3) | 0.047 (3) | 0.089 (4) | 0.010 (3) | 0.045 (3) | 0.014 (3) |
O6 | 0.095 (3) | 0.096 (3) | 0.158 (4) | 0.012 (2) | 0.014 (3) | 0.083 (3) |
O7 | 0.084 (2) | 0.0428 (17) | 0.159 (4) | −0.0101 (17) | 0.035 (3) | −0.004 (2) |
O8 | 0.0650 (19) | 0.0590 (18) | 0.082 (2) | 0.0120 (15) | 0.0089 (17) | 0.0084 (17) |
O9 | 0.0537 (18) | 0.0671 (19) | 0.092 (3) | −0.0054 (16) | 0.0205 (17) | 0.0079 (18) |
C35 | 0.052 (3) | 0.053 (2) | 0.038 (2) | 0.004 (2) | −0.001 (2) | −0.003 (2) |
C29 | 0.046 (2) | 0.0341 (18) | 0.034 (2) | −0.0047 (16) | 0.0011 (18) | −0.0036 (16) |
C30 | 0.046 (2) | 0.0342 (19) | 0.032 (2) | −0.0065 (17) | −0.0051 (17) | −0.0059 (16) |
C31 | 0.046 (2) | 0.052 (2) | 0.047 (3) | −0.0093 (19) | 0.0019 (19) | −0.007 (2) |
C32 | 0.055 (3) | 0.042 (2) | 0.062 (3) | 0.003 (2) | −0.003 (2) | −0.008 (2) |
C33 | 0.070 (3) | 0.036 (2) | 0.055 (3) | 0.007 (2) | 0.000 (2) | −0.001 (2) |
C34 | 0.062 (3) | 0.0351 (19) | 0.050 (3) | −0.0053 (19) | 0.014 (2) | 0.0015 (18) |
C36 | 0.061 (3) | 0.043 (2) | 0.058 (3) | −0.013 (2) | −0.008 (2) | 0.008 (2) |
O10 | 0.084 (2) | 0.074 (2) | 0.104 (3) | −0.0180 (19) | 0.023 (2) | 0.036 (2) |
O11 | 0.082 (2) | 0.0426 (16) | 0.108 (3) | 0.0064 (16) | 0.002 (2) | 0.0206 (18) |
Cu—N1 | 2.031 (3) | C17—H17A | 0.9300 |
Cu—N4i | 2.037 (2) | C18—C19 | 1.384 (5) |
Cu—N2i | 2.040 (2) | C19—C20 | 1.374 (4) |
Cu—N3 | 2.054 (3) | C19—H19A | 0.9300 |
Cu—O1 | 2.438 (3) | C20—N4 | 1.343 (4) |
Cu—O2 | 2.513 (3) | C20—H20A | 0.9300 |
N1—C5 | 1.330 (4) | N4—Cuii | 2.037 (2) |
N1—C1 | 1.338 (4) | O1—HW1 | 0.8101 |
C1—C2 | 1.376 (5) | O1—HW2 | 0.8061 |
C1—H1A | 0.9300 | O2—H2C | 0.7498 |
C2—C3 | 1.370 (5) | O2—H2D | 0.8035 |
C2—H2A | 0.9300 | O3—H3C | 0.8067 |
C3—C4 | 1.383 (5) | O3—H3D | 0.7598 |
C3—S1 | 1.772 (3) | O4—C27 | 1.207 (5) |
C4—C5 | 1.374 (5) | O5—C27 | 1.281 (5) |
C4—H4A | 0.9300 | O5—H5C | 0.8501 |
C5—H5A | 0.9300 | C27—C21 | 1.516 (5) |
S1—S2 | 2.0271 (15) | C21—C26 | 1.392 (5) |
S2—C8 | 1.778 (3) | C21—C22 | 1.411 (5) |
C6—N2 | 1.341 (4) | C22—C23 | 1.374 (5) |
C6—C7 | 1.372 (4) | C22—C28 | 1.523 (5) |
C6—H6A | 0.9300 | C23—C24 | 1.391 (5) |
C7—C8 | 1.382 (4) | C23—H23A | 0.9300 |
C7—H7A | 0.9300 | C24—C25 | 1.374 (5) |
C8—C9 | 1.373 (5) | C24—H24A | 0.9300 |
C9—C10 | 1.372 (4) | C25—C26 | 1.373 (5) |
C9—H9A | 0.9300 | C25—H25A | 0.9300 |
C10—N2 | 1.346 (4) | C26—H26A | 0.9300 |
C10—H10A | 0.9300 | C28—O7 | 1.219 (6) |
N2—Cuii | 2.040 (2) | C28—O6 | 1.275 (6) |
N3—C15 | 1.332 (4) | O8—C35 | 1.281 (4) |
N3—C11 | 1.339 (4) | O8—H8C | 0.8655 |
C11—C12 | 1.384 (4) | O9—C35 | 1.228 (4) |
C11—H11A | 0.9300 | C35—C29 | 1.516 (5) |
C12—C13 | 1.378 (5) | C29—C34 | 1.393 (5) |
C12—H12A | 0.9300 | C29—C30 | 1.408 (5) |
C13—C14 | 1.396 (4) | C30—C31 | 1.388 (5) |
C13—S3 | 1.769 (3) | C30—C36 | 1.535 (5) |
C14—C15 | 1.381 (4) | C31—C32 | 1.385 (5) |
C14—H14A | 0.9300 | C31—H31A | 0.9300 |
C15—H15A | 0.9300 | C32—C33 | 1.374 (5) |
S3—S4 | 2.0275 (14) | C32—H32A | 0.9300 |
S4—C18 | 1.771 (3) | C33—C34 | 1.372 (5) |
C16—N4 | 1.346 (4) | C33—H33A | 0.9300 |
C16—C17 | 1.376 (4) | C34—H34A | 0.9300 |
C16—H16A | 0.9300 | C36—O10 | 1.211 (5) |
C17—C18 | 1.388 (5) | C36—O11 | 1.291 (5) |
N1—Cu—N4i | 176.78 (12) | N4—C16—H16A | 118.6 |
N1—Cu—N2i | 90.08 (10) | C17—C16—H16A | 118.6 |
N4i—Cu—N2i | 90.99 (9) | C16—C17—C18 | 118.9 (3) |
N1—Cu—N3 | 88.97 (9) | C16—C17—H17A | 120.6 |
N4i—Cu—N3 | 90.31 (10) | C18—C17—H17A | 120.6 |
N2i—Cu—N3 | 173.34 (13) | C19—C18—C17 | 118.3 (3) |
N1—Cu—O1 | 93.99 (10) | C19—C18—S4 | 116.3 (3) |
N4i—Cu—O1 | 89.11 (11) | C17—C18—S4 | 125.3 (2) |
N2i—Cu—O1 | 86.72 (11) | C20—C19—C18 | 119.6 (3) |
N3—Cu—O1 | 86.78 (10) | C20—C19—H19A | 120.2 |
N1—Cu—O2 | 93.42 (10) | C18—C19—H19A | 120.2 |
N4i—Cu—O2 | 83.60 (11) | N4—C20—C19 | 122.4 (3) |
N2i—Cu—O2 | 87.10 (11) | N4—C20—H20A | 118.8 |
N3—Cu—O2 | 99.53 (10) | C19—C20—H20A | 118.8 |
O1—Cu—O2 | 170.35 (8) | C20—N4—C16 | 117.9 (3) |
C5—N1—C1 | 116.8 (3) | C20—N4—Cuii | 120.3 (2) |
C5—N1—Cu | 122.5 (2) | C16—N4—Cuii | 121.7 (2) |
C1—N1—Cu | 120.6 (2) | Cu—O1—HW1 | 116.8 |
N1—C1—C2 | 123.0 (3) | Cu—O1—HW2 | 114.0 |
N1—C1—H1A | 118.5 | HW1—O1—HW2 | 128.7 |
C2—C1—H1A | 118.5 | Cu—O2—H2C | 111.5 |
C3—C2—C1 | 119.5 (4) | Cu—O2—H2D | 119.5 |
C3—C2—H2A | 120.3 | H2C—O2—H2D | 116.1 |
C1—C2—H2A | 120.3 | H3C—O3—H3D | 108.6 |
C2—C3—C4 | 118.1 (3) | C27—O5—H5C | 110.2 |
C2—C3—S1 | 116.7 (3) | O4—C27—O5 | 121.5 (4) |
C4—C3—S1 | 125.1 (3) | O4—C27—C21 | 119.6 (4) |
C5—C4—C3 | 118.7 (3) | O5—C27—C21 | 118.9 (4) |
C5—C4—H4A | 120.6 | C26—C21—C22 | 118.5 (3) |
C3—C4—H4A | 120.6 | C26—C21—C27 | 113.5 (4) |
N1—C5—C4 | 123.8 (3) | C22—C21—C27 | 128.1 (3) |
N1—C5—H5A | 118.1 | C23—C22—C21 | 119.0 (3) |
C4—C5—H5A | 118.1 | C23—C22—C28 | 114.2 (4) |
C3—S1—S2 | 106.16 (13) | C21—C22—C28 | 126.8 (4) |
C8—S2—S1 | 105.40 (14) | C22—C23—C24 | 121.5 (4) |
N2—C6—C7 | 123.4 (3) | C22—C23—H23A | 119.2 |
N2—C6—H6A | 118.3 | C24—C23—H23A | 119.2 |
C7—C6—H6A | 118.3 | C25—C24—C23 | 119.6 (4) |
C6—C7—C8 | 118.6 (3) | C25—C24—H24A | 120.2 |
C6—C7—H7A | 120.7 | C23—C24—H24A | 120.2 |
C8—C7—H7A | 120.7 | C26—C25—C24 | 119.6 (4) |
C9—C8—C7 | 119.2 (3) | C26—C25—H25A | 120.2 |
C9—C8—S2 | 125.4 (2) | C24—C25—H25A | 120.2 |
C7—C8—S2 | 115.3 (3) | C25—C26—C21 | 121.7 (4) |
C10—C9—C8 | 118.4 (3) | C25—C26—H26A | 119.1 |
C10—C9—H9A | 120.8 | C21—C26—H26A | 119.1 |
C8—C9—H9A | 120.8 | O7—C28—O6 | 123.2 (5) |
N2—C10—C9 | 123.7 (3) | O7—C28—C22 | 118.7 (5) |
N2—C10—H10A | 118.1 | O6—C28—C22 | 118.0 (5) |
C9—C10—H10A | 118.1 | C35—O8—H8C | 111.4 |
C6—N2—C10 | 116.6 (3) | O9—C35—O8 | 119.2 (4) |
C6—N2—Cuii | 119.3 (2) | O9—C35—C29 | 120.4 (3) |
C10—N2—Cuii | 123.7 (2) | O8—C35—C29 | 120.3 (4) |
C15—N3—C11 | 116.8 (3) | C34—C29—C30 | 117.9 (3) |
C15—N3—Cu | 118.1 (2) | C34—C29—C35 | 114.3 (3) |
C11—N3—Cu | 124.6 (2) | C30—C29—C35 | 127.8 (3) |
N3—C11—C12 | 123.0 (3) | C31—C30—C29 | 118.5 (3) |
N3—C11—H11A | 118.5 | C31—C30—C36 | 112.8 (3) |
C12—C11—H11A | 118.5 | C29—C30—C36 | 128.7 (3) |
C13—C12—C11 | 119.7 (3) | C32—C31—C30 | 122.5 (4) |
C13—C12—H12A | 120.2 | C32—C31—H31A | 118.8 |
C11—C12—H12A | 120.2 | C30—C31—H31A | 118.8 |
C12—C13—C14 | 117.9 (3) | C33—C32—C31 | 118.7 (4) |
C12—C13—S3 | 126.4 (2) | C33—C32—H32A | 120.6 |
C14—C13—S3 | 115.7 (3) | C31—C32—H32A | 120.6 |
C15—C14—C13 | 118.3 (3) | C34—C33—C32 | 119.8 (4) |
C15—C14—H14A | 120.9 | C34—C33—H33A | 120.1 |
C13—C14—H14A | 120.9 | C32—C33—H33A | 120.1 |
N3—C15—C14 | 124.3 (3) | C33—C34—C29 | 122.6 (4) |
N3—C15—H15A | 117.8 | C33—C34—H34A | 118.7 |
C14—C15—H15A | 117.8 | C29—C34—H34A | 118.7 |
C13—S3—S4 | 105.02 (13) | O10—C36—O11 | 123.0 (4) |
C18—S4—S3 | 106.42 (13) | O10—C36—C30 | 119.3 (4) |
N4—C16—C17 | 122.9 (3) | O11—C36—C30 | 117.7 (4) |
Symmetry codes: (i) x, y+1, z; (ii) x, y−1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—HW1···O7 | 0.81 | 2.51 | 3.118 (6) | 133 |
O1—HW2···O3iii | 0.81 | 1.92 | 2.658 (4) | 153 |
O2—H2C···O7iv | 0.75 | 2.13 | 2.878 (4) | 174 |
O2—H2D···O9 | 0.80 | 2.05 | 2.841 (4) | 171 |
O3—H3C···O4iv | 0.81 | 2.02 | 2.800 (4) | 163 |
O3—H3D···O11 | 0.76 | 2.03 | 2.784 (5) | 172 |
O5—H5C···O6 | 0.85 | 1.51 | 2.358 (5) | 178 |
O8—H8C···O11 | 0.87 | 1.50 | 2.367 (4) | 178 |
Symmetry codes: (iii) −x+1/2, y+1/2, z−1/2; (iv) −x+1, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C10H8N2S2)2(H2O)2](C8H5O4)2·H2O |
Mr | 888.44 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 295 |
a, b, c (Å) | 20.253 (4), 10.732 (2), 17.228 (3) |
V (Å3) | 3744.6 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.88 |
Crystal size (mm) | 0.40 × 0.13 × 0.12 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.870, 0.901 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 34124, 8513, 5968 |
Rint | 0.077 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.081, 1.02 |
No. of reflections | 8513 |
No. of parameters | 506 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.32 |
Absolute structure | Flack (1983), 4088 Friedel pairs |
Absolute structure parameter | 0.00 (7) |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—HW1···O7 | 0.81 | 2.51 | 3.118 (6) | 133 |
O1—HW2···O3i | 0.81 | 1.92 | 2.658 (4) | 153 |
O2—H2C···O7ii | 0.75 | 2.13 | 2.878 (4) | 174 |
O2—H2D···O9 | 0.80 | 2.05 | 2.841 (4) | 171 |
O3—H3C···O4ii | 0.81 | 2.02 | 2.800 (4) | 163 |
O3—H3D···O11 | 0.76 | 2.03 | 2.784 (5) | 172 |
O5—H5C···O6 | 0.85 | 1.51 | 2.358 (5) | 178 |
O8—H8C···O11 | 0.87 | 1.50 | 2.367 (4) | 178 |
Symmetry codes: (i) −x+1/2, y+1/2, z−1/2; (ii) −x+1, −y+1, z+1/2. |
Acknowledgements
This project was supported by the National Natural Science Foundation of China (grant No. 20072022), the Science and Technology Department of Zhejiang Province (grant No. 2006 C21105) and the Education Department of Zhejiang Province. Grateful thanks are also extended to the K. C. Wong Magna Fund in Ningbo University.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Over past few years, the 4,4'-dipyridyldisulfide has received considerable attention due to both its conformational flexibility and axial chirality (Horikoshi & Mochida, 2006). A large number of metal coordination networks have been reported by using these ligands only or in combination with suitable anions (Manna et al., 2005, 2007; Luo et al., 2003). In this contribution, we report the synthesis and crystal structure of the title compound.
The asymmetric unit of the title compound, {[Cu(4-DPDS)2(H2O)2].2(C8H5O4)-.H2O}n (4-DPDS = 4,4'-dipyridinedisulfide),contains one CuII ion, two bridging 4-DPDS ligands of the same chirality, two coordinating water molecules, two hydrogen phthalate anions and one lattice water molecule (Fig. 1). The copper atoms are each coordinated by four pyridine nitrogen atoms and two aqua ligands to complete an elongated octahedral CuN4O2 chromophore of "4 + 2" coordination type due to Jahn-Teller effect. The equatorial positions are occupied by four N toms of four 4-DPDS ligands, and the axial ones by two aqua O atoms. The Cu—O distances of 2.513 (3) Å and 2.438 (3) Å are significantly larger than those to the nitrogen atoms (Cu—N = 2.031 (3)–2.054 (3) Å), indicating a weak coordination capability of the aqua ligand. The cis and trans N—Cu—N angles fall in the regions 88.97 (9)–90.99 (9)° and 173.34 (13)–176.78 (12)°, respectively, exhibiting small deviation from the corresponding values for a regular geometry. The bond lengths (with the Cu atoms) are all within the normal ranges (Manna et al., 2007).
The Cu atoms are bridged by four 4-DPDS ligands to form one-dimensional double–stranded chains extending in the [010] direction. The one-dimensional chains with respect to the neighbour are close-packed in ···ABAB··· sequence (Fig. 2). Despite the Cu—Cu distance spanned by the two 4-DPDS are 10.732 (2) Å, but no similar mesoporous structure form, because the HL- anions and lattice H2O molecule reside in cavities in the one-dimensional chain metallacycle. The HL- anions play a role in balancing in charge, the carboxylic –COOH groups favor formation of strong intramolecular hydrogen bond to carboxylate O6 atom and O11 atom, and the lattice H2O molecule form hydrogen bonds to two HL- ainions. The distance of S—S between adjacent chains is 5.17 (1) Å, which is much greater than van der waals distance (3.7 Å), shows that there is no S—S weak interaction.The chains are linked via those interchain hydrogen bonds between the aqua ligand and the carboxylate atoms (Table 1) into two-dimensional layers (Fig. 3).