organic compounds
(R)-2-(2-Methoxyphenyl)-2,5-dihydrothiophene-3-carbaldehyde
aState Key Laboratory Breeding Base of Green Chemistry–Synthesis Technology, Zhejiang University of Technology, Hangzhou 310014, People's Republic of China
*Correspondence e-mail: casy0901@hotmail.com
In the title compound, C12H12O2S, the contains two independent molecules. The chiral C atoms of both molecules were established to be in the R configuration. In both molecules, the 2,5-dihydrothiophene rings adopt S-envelope conformations wherein the S atoms are displaced by 0.315 (5) and −0.249 (5) Å from the mean planes of the remaining ring atoms. In the crystal, the molecules are linked by weak C—H⋯O interactions.
Related literature
For background to the organocatalytic domino reaction, see: Enders et al. (2007); Yu & Wang (2008). For a related structure, see: Zhu et al. (2009).
Experimental
Crystal data
|
Data collection: PROCESS-AUTO (Rigaku, 2006); cell PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
https://doi.org/10.1107/S1600536810000991/pv2254sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810000991/pv2254Isup2.hkl
The title compound was prepared by mixing a toluene (1 ml) solution of (E)-3-(2-methoxyphenyl)acrylaldehyde (1 mmol) and 1,4-dithiane-2,5-diol (0.6 mmol) in the presence of (S)-2-(diphenyl(trimethylsilyloxy)methyl)pyrrolidine (0.2 mmol) as amine catalyst and 4-nitro-benzoic acid (0.1 mmol) as additive at room temperature with stirring. After completion of the reaction, the mixture was washed with water and extracted with ethyl acetate. The solvent was removed under reduced pressure and the residue was purified by silica gel
(eluent: petroleum ether/diethyl ether). Single crystals were obtained by slow evaporation of an acetone solution.H atoms were placed in calculated position with C—H = 0.98, 0.97, 0.96 and 0.93 Å for sp, sp2, sp3 and aromatic H-atoms, respectively. All H atoms were included in the final cycles of
in riding mode, with Uiso(H)=1.2Ueq of the carrier atoms.There has been growing interest in the study of domino or cascade reaction as it allows in principle the formation of multiple new bonds and stereocenters (Enders et al., 2007; Yu & Wang, 2008) in a one-pot system. Consequently, The title compound, (I), was synthesized as one of a series of thio-Michael-aldol products under investigation. In this paper, the
and of (I) has been presented.The
of the title compoud (Fig. 1) contains two independent molecules (molecules A and B) in an wherein C1A and C1B atoms have been established to exhibit R configuration. The main structure unit is a five-membered 2,5-dihydrothiophene ring with an aldehyde group and a 2-methoxyphenyl group. In molecule A, the atom S1A of the five-membered ring lies 0.315 (5)Å from the mean plane of C1A/C2A/C3A/C4A, the atoms O2A, C12A of the methoxy group lie -0.057 (5) and -0.213 (5) Å, respectively, from the benzene ring. The dihedral angel between the main planes of atoms CA1/C2A/C3A/C4A and the benzene ring is 75.45 (5)°. In molecule B, the atom S2B of the five-membered ring lies -0.249 (5)Å from the mean plane of C13B/C14B/C15B/C16B, the atoms O4B, C24B of the methoxy group lie 0.039 (5) and 0.001 (5) Å, respectively, from the benzene ring. The dihedral angel between the main plane formed by the atoms C13B/C14B/C15B/C16B and the benzene ring is 74.10 (5) °. The is devoid of any classical hydrogen bonds. However, non-classical intermolecular interactions of the type C—H···O are present in the structure (Table 1).The
of 2-morpholino-4-oxo-4,5-dihydrothiophene-3-carbonitrile which is closely related to the title compound has been reported recently (Zhu et al., 2009).For background literature, see: Enders et al. (2007); Yu & Wang (2008). For a related structure, see: Zhu et al. (2009).
Data collection: PROCESS-AUTO (Rigaku, 2006); cell
PROCESS-AUTO (Rigaku, 2006); data reduction: CrystalStructure (Rigaku, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).C12H12O2S | Z = 2 |
Mr = 220.28 | F(000) = 232 |
Triclinic, P1 | Dx = 1.285 Mg m−3 |
Hall symbol: P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.8281 (6) Å | Cell parameters from 4403 reflections |
b = 7.7624 (9) Å | θ = 3.1–27.4° |
c = 11.8748 (12) Å | µ = 0.26 mm−1 |
α = 71.733 (3)° | T = 296 K |
β = 79.051 (3)° | Chunk, yellow |
γ = 73.488 (3)° | 0.46 × 0.42 × 0.38 mm |
V = 569.50 (10) Å3 |
Rigaku R-AXIS RAPID diffractometer | 4243 independent reflections |
Radiation source: rolling anode | 3098 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
Detector resolution: 10.00 pixels mm-1 | θmax = 27.4°, θmin = 3.1° |
ω scans | h = −7→8 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −10→10 |
Tmin = 0.886, Tmax = 0.905 | l = −14→15 |
5623 measured reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.039 | w = 1/[σ2(Fo2) + (0.0219P)2 + 0.3733P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.116 | (Δ/σ)max < 0.001 |
S = 1.00 | Δρmax = 0.25 e Å−3 |
4243 reflections | Δρmin = −0.31 e Å−3 |
274 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
3 restraints | Extinction coefficient: 0.053 (5) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1657 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.02 (9) |
C12H12O2S | γ = 73.488 (3)° |
Mr = 220.28 | V = 569.50 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 6.8281 (6) Å | Mo Kα radiation |
b = 7.7624 (9) Å | µ = 0.26 mm−1 |
c = 11.8748 (12) Å | T = 296 K |
α = 71.733 (3)° | 0.46 × 0.42 × 0.38 mm |
β = 79.051 (3)° |
Rigaku R-AXIS RAPID diffractometer | 4243 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 3098 reflections with I > 2σ(I) |
Tmin = 0.886, Tmax = 0.905 | Rint = 0.031 |
5623 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | H-atom parameters constrained |
wR(F2) = 0.116 | Δρmax = 0.25 e Å−3 |
S = 1.00 | Δρmin = −0.31 e Å−3 |
4243 reflections | Absolute structure: Flack (1983), 1657 Friedel pairs |
274 parameters | Absolute structure parameter: 0.02 (9) |
3 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1B | 0.18231 (16) | −0.06575 (15) | 0.81497 (10) | 0.0748 (4) | |
S1A | 0.48209 (17) | 1.01438 (17) | 0.33170 (10) | 0.0809 (4) | |
O2A | 0.9679 (4) | 1.0496 (4) | 0.2171 (2) | 0.0612 (7) | |
C11B | 0.5790 (6) | 0.0081 (5) | 0.9189 (3) | 0.0524 (9) | |
C6A | 0.8721 (5) | 0.7749 (5) | 0.3322 (3) | 0.0461 (8) | |
C11A | 1.0032 (5) | 0.8609 (5) | 0.2381 (3) | 0.0475 (8) | |
C1B | 0.3932 (5) | 0.0505 (5) | 0.7461 (3) | 0.0499 (8) | |
H1B | 0.5127 | −0.0423 | 0.7236 | 0.060* | |
C6B | 0.4530 (5) | 0.1295 (5) | 0.8313 (3) | 0.0470 (8) | |
O2B | 0.6306 (4) | −0.1755 (4) | 0.9175 (3) | 0.0719 (8) | |
C1A | 0.7167 (5) | 0.8901 (5) | 0.4051 (3) | 0.0505 (8) | |
H1A | 0.7784 | 0.9821 | 0.4165 | 0.061* | |
C7A | 0.8916 (6) | 0.5850 (5) | 0.3545 (3) | 0.0570 (9) | |
H7A | 0.8034 | 0.5268 | 0.4145 | 0.068* | |
O1B | 0.6367 (5) | 0.2578 (6) | 0.5468 (3) | 0.0955 (11) | |
C9A | 1.1709 (7) | 0.5657 (7) | 0.2007 (4) | 0.0748 (13) | |
H9A | 1.2740 | 0.4944 | 0.1590 | 0.090* | |
C10A | 1.1518 (6) | 0.7556 (6) | 0.1729 (3) | 0.0617 (10) | |
H10A | 1.2380 | 0.8127 | 0.1109 | 0.074* | |
C8B | 0.4500 (7) | 0.3803 (7) | 0.9109 (4) | 0.0698 (12) | |
H8B | 0.4055 | 0.5060 | 0.9090 | 0.084* | |
O1A | 0.9507 (5) | 0.6890 (5) | 0.6125 (3) | 0.0903 (10) | |
C5A | 0.7736 (7) | 0.6832 (6) | 0.6196 (4) | 0.0682 (11) | |
H5A | 0.7184 | 0.6122 | 0.6908 | 0.082* | |
C9B | 0.5748 (7) | 0.2607 (7) | 0.9928 (4) | 0.0726 (12) | |
H9B | 0.6177 | 0.3058 | 1.0455 | 0.087* | |
C3B | 0.1198 (6) | 0.2121 (6) | 0.6214 (4) | 0.0707 (12) | |
H3B | 0.0611 | 0.2978 | 0.5550 | 0.085* | |
C2B | 0.3153 (5) | 0.1889 (5) | 0.6343 (3) | 0.0539 (9) | |
C10B | 0.6390 (6) | 0.0731 (6) | 0.9991 (3) | 0.0646 (11) | |
H10B | 0.7220 | −0.0087 | 1.0569 | 0.078* | |
C7B | 0.3878 (6) | 0.3165 (5) | 0.8297 (3) | 0.0584 (9) | |
H7B | 0.3020 | 0.3997 | 0.7738 | 0.070* | |
C2A | 0.6391 (6) | 0.7799 (5) | 0.5245 (3) | 0.0525 (9) | |
C3A | 0.4430 (6) | 0.7717 (6) | 0.5405 (4) | 0.0636 (11) | |
H3A | 0.3857 | 0.7042 | 0.6124 | 0.076* | |
C4B | −0.0019 (7) | 0.0973 (8) | 0.7161 (4) | 0.0938 (17) | |
H4B1 | −0.0666 | 0.0312 | 0.6826 | 0.113* | |
H4B2 | −0.1076 | 0.1748 | 0.7585 | 0.113* | |
C8A | 1.0396 (7) | 0.4804 (6) | 0.2892 (4) | 0.0709 (12) | |
H8A | 1.0503 | 0.3530 | 0.3051 | 0.085* | |
C12A | 1.0829 (7) | 1.1464 (6) | 0.1151 (4) | 0.0725 (12) | |
H12A | 1.2258 | 1.1087 | 0.1270 | 0.109* | |
H12B | 1.0340 | 1.2787 | 0.1044 | 0.109* | |
H12C | 1.0661 | 1.1167 | 0.0454 | 0.109* | |
C5B | 0.4545 (8) | 0.2860 (6) | 0.5426 (4) | 0.0720 (12) | |
H5B | 0.3984 | 0.3757 | 0.4767 | 0.086* | |
C4A | 0.3209 (7) | 0.8746 (7) | 0.4393 (4) | 0.0794 (14) | |
H4A1 | 0.1932 | 0.9538 | 0.4647 | 0.095* | |
H4A2 | 0.2893 | 0.7886 | 0.4052 | 0.095* | |
C12B | 0.7650 (8) | −0.3065 (7) | 1.0013 (5) | 0.0974 (18) | |
H12D | 0.8876 | −0.2644 | 0.9932 | 0.146* | |
H12E | 0.8005 | −0.4266 | 0.9861 | 0.146* | |
H12F | 0.6971 | −0.3162 | 1.0808 | 0.146* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1B | 0.0757 (7) | 0.0954 (8) | 0.0581 (6) | −0.0439 (6) | −0.0105 (5) | −0.0051 (6) |
S1A | 0.0595 (6) | 0.0968 (9) | 0.0570 (6) | 0.0082 (5) | −0.0066 (5) | −0.0044 (6) |
O2A | 0.0662 (17) | 0.0593 (16) | 0.0527 (15) | −0.0238 (13) | 0.0090 (12) | −0.0094 (13) |
C11B | 0.052 (2) | 0.059 (2) | 0.0457 (19) | −0.0200 (17) | −0.0097 (15) | −0.0055 (16) |
C6A | 0.0444 (18) | 0.0550 (19) | 0.0367 (16) | −0.0105 (14) | −0.0069 (13) | −0.0094 (14) |
C11A | 0.0433 (19) | 0.054 (2) | 0.0402 (17) | −0.0074 (14) | −0.0049 (13) | −0.0092 (15) |
C1B | 0.0415 (19) | 0.058 (2) | 0.0439 (18) | −0.0088 (15) | −0.0053 (14) | −0.0082 (16) |
C6B | 0.0435 (19) | 0.057 (2) | 0.0398 (17) | −0.0143 (14) | −0.0025 (13) | −0.0124 (15) |
O2B | 0.077 (2) | 0.0537 (16) | 0.082 (2) | −0.0061 (13) | −0.0380 (15) | −0.0055 (14) |
C1A | 0.0468 (19) | 0.055 (2) | 0.0415 (18) | −0.0078 (15) | 0.0016 (14) | −0.0100 (15) |
C7A | 0.066 (2) | 0.056 (2) | 0.0419 (18) | −0.0080 (17) | −0.0076 (16) | −0.0094 (16) |
O1B | 0.081 (3) | 0.134 (3) | 0.072 (2) | −0.059 (2) | 0.0003 (18) | −0.006 (2) |
C9A | 0.069 (3) | 0.084 (3) | 0.062 (3) | 0.010 (2) | −0.003 (2) | −0.034 (2) |
C10A | 0.050 (2) | 0.083 (3) | 0.047 (2) | −0.0103 (19) | 0.0017 (16) | −0.021 (2) |
C8B | 0.083 (3) | 0.067 (3) | 0.066 (3) | −0.030 (2) | 0.010 (2) | −0.026 (2) |
O1A | 0.077 (2) | 0.115 (3) | 0.080 (2) | −0.0127 (19) | −0.0280 (18) | −0.027 (2) |
C5A | 0.074 (3) | 0.081 (3) | 0.045 (2) | −0.016 (2) | −0.0056 (19) | −0.015 (2) |
C9B | 0.080 (3) | 0.098 (4) | 0.057 (2) | −0.046 (3) | 0.005 (2) | −0.031 (2) |
C3B | 0.057 (3) | 0.093 (3) | 0.048 (2) | −0.001 (2) | −0.0129 (18) | −0.010 (2) |
C2B | 0.052 (2) | 0.064 (2) | 0.0389 (18) | −0.0054 (16) | −0.0100 (15) | −0.0095 (16) |
C10B | 0.060 (2) | 0.093 (3) | 0.047 (2) | −0.031 (2) | −0.0098 (17) | −0.013 (2) |
C7B | 0.066 (2) | 0.058 (2) | 0.049 (2) | −0.0163 (18) | −0.0009 (17) | −0.0139 (17) |
C2A | 0.056 (2) | 0.058 (2) | 0.0421 (19) | −0.0149 (16) | 0.0033 (15) | −0.0157 (16) |
C3A | 0.061 (3) | 0.079 (3) | 0.050 (2) | −0.026 (2) | 0.0066 (18) | −0.017 (2) |
C4B | 0.056 (3) | 0.150 (5) | 0.068 (3) | −0.029 (3) | −0.007 (2) | −0.015 (3) |
C8A | 0.088 (3) | 0.061 (2) | 0.052 (2) | 0.005 (2) | −0.008 (2) | −0.019 (2) |
C12A | 0.076 (3) | 0.087 (3) | 0.054 (2) | −0.042 (2) | 0.007 (2) | −0.007 (2) |
C5B | 0.090 (4) | 0.078 (3) | 0.044 (2) | −0.027 (2) | −0.007 (2) | −0.0043 (19) |
C4A | 0.061 (3) | 0.107 (4) | 0.076 (3) | −0.022 (2) | −0.011 (2) | −0.030 (3) |
C12B | 0.091 (4) | 0.074 (3) | 0.116 (4) | −0.021 (3) | −0.058 (3) | 0.017 (3) |
S1B—C4B | 1.813 (5) | C8B—C7B | 1.389 (6) |
S1B—C1B | 1.839 (4) | C8B—H8B | 0.9300 |
S1A—C4A | 1.816 (5) | O1A—C5A | 1.209 (5) |
S1A—C1A | 1.839 (4) | C5A—C2A | 1.468 (6) |
O2A—C11A | 1.363 (4) | C5A—H5A | 0.9300 |
O2A—C12A | 1.433 (4) | C9B—C10B | 1.379 (6) |
C11B—O2B | 1.372 (5) | C9B—H9B | 0.9300 |
C11B—C10B | 1.377 (5) | C3B—C2B | 1.327 (5) |
C11B—C6B | 1.405 (5) | C3B—C4B | 1.478 (6) |
C6A—C7A | 1.385 (5) | C3B—H3B | 0.9300 |
C6A—C11A | 1.410 (4) | C2B—C5B | 1.469 (6) |
C6A—C1A | 1.507 (5) | C10B—H10B | 0.9300 |
C11A—C10A | 1.387 (5) | C7B—H7B | 0.9300 |
C1B—C2B | 1.500 (4) | C2A—C3A | 1.333 (5) |
C1B—C6B | 1.502 (5) | C3A—C4A | 1.476 (6) |
C1B—H1B | 0.9800 | C3A—H3A | 0.9300 |
C6B—C7B | 1.387 (5) | C4B—H4B1 | 0.9700 |
O2B—C12B | 1.431 (5) | C4B—H4B2 | 0.9700 |
C1A—C2A | 1.495 (4) | C8A—H8A | 0.9300 |
C1A—H1A | 0.9800 | C12A—H12A | 0.9600 |
C7A—C8A | 1.383 (5) | C12A—H12B | 0.9600 |
C7A—H7A | 0.9300 | C12A—H12C | 0.9600 |
O1B—C5B | 1.208 (5) | C5B—H5B | 0.9300 |
C9A—C8A | 1.375 (6) | C4A—H4A1 | 0.9700 |
C9A—C10A | 1.379 (6) | C4A—H4A2 | 0.9700 |
C9A—H9A | 0.9300 | C12B—H12D | 0.9600 |
C10A—H10A | 0.9300 | C12B—H12E | 0.9600 |
C8B—C9B | 1.354 (7) | C12B—H12F | 0.9600 |
C4B—S1B—C1B | 95.1 (2) | C2B—C3B—H3B | 121.1 |
C4A—S1A—C1A | 94.67 (19) | C4B—C3B—H3B | 121.1 |
C11A—O2A—C12A | 117.2 (3) | C3B—C2B—C5B | 122.7 (4) |
O2B—C11B—C10B | 124.6 (3) | C3B—C2B—C1B | 116.8 (3) |
O2B—C11B—C6B | 114.3 (3) | C5B—C2B—C1B | 120.4 (3) |
C10B—C11B—C6B | 121.1 (3) | C11B—C10B—C9B | 119.3 (4) |
C7A—C6A—C11A | 118.2 (3) | C11B—C10B—H10B | 120.3 |
C7A—C6A—C1A | 122.1 (3) | C9B—C10B—H10B | 120.3 |
C11A—C6A—C1A | 119.7 (3) | C6B—C7B—C8B | 120.4 (4) |
O2A—C11A—C10A | 124.6 (3) | C6B—C7B—H7B | 119.8 |
O2A—C11A—C6A | 115.0 (3) | C8B—C7B—H7B | 119.8 |
C10A—C11A—C6A | 120.4 (3) | C3A—C2A—C5A | 121.4 (4) |
C2B—C1B—C6B | 116.1 (3) | C3A—C2A—C1A | 117.2 (4) |
C2B—C1B—S1B | 103.9 (3) | C5A—C2A—C1A | 121.5 (3) |
C6B—C1B—S1B | 111.5 (2) | C2A—C3A—C4A | 117.0 (4) |
C2B—C1B—H1B | 108.4 | C2A—C3A—H3A | 121.5 |
C6B—C1B—H1B | 108.4 | C4A—C3A—H3A | 121.5 |
S1B—C1B—H1B | 108.4 | C3B—C4B—S1B | 105.0 (3) |
C7B—C6B—C11B | 117.8 (3) | C3B—C4B—H4B1 | 110.7 |
C7B—C6B—C1B | 123.5 (3) | S1B—C4B—H4B1 | 110.7 |
C11B—C6B—C1B | 118.7 (3) | C3B—C4B—H4B2 | 110.7 |
C11B—O2B—C12B | 117.5 (4) | S1B—C4B—H4B2 | 110.7 |
C2A—C1A—C6A | 114.7 (3) | H4B1—C4B—H4B2 | 108.8 |
C2A—C1A—S1A | 103.7 (2) | C9A—C8A—C7A | 119.6 (4) |
C6A—C1A—S1A | 112.1 (3) | C9A—C8A—H8A | 120.2 |
C2A—C1A—H1A | 108.7 | C7A—C8A—H8A | 120.2 |
C6A—C1A—H1A | 108.7 | O2A—C12A—H12A | 109.5 |
S1A—C1A—H1A | 108.7 | O2A—C12A—H12B | 109.5 |
C8A—C7A—C6A | 121.3 (4) | H12A—C12A—H12B | 109.5 |
C8A—C7A—H7A | 119.4 | O2A—C12A—H12C | 109.5 |
C6A—C7A—H7A | 119.4 | H12A—C12A—H12C | 109.5 |
C8A—C9A—C10A | 120.9 (4) | H12B—C12A—H12C | 109.5 |
C8A—C9A—H9A | 119.6 | O1B—C5B—C2B | 124.7 (4) |
C10A—C9A—H9A | 119.6 | O1B—C5B—H5B | 117.7 |
C9A—C10A—C11A | 119.6 (4) | C2B—C5B—H5B | 117.7 |
C9A—C10A—H10A | 120.2 | C3A—C4A—S1A | 105.1 (3) |
C11A—C10A—H10A | 120.2 | C3A—C4A—H4A1 | 110.7 |
C9B—C8B—C7B | 120.4 (4) | S1A—C4A—H4A1 | 110.7 |
C9B—C8B—H8B | 119.8 | C3A—C4A—H4A2 | 110.7 |
C7B—C8B—H8B | 119.8 | S1A—C4A—H4A2 | 110.7 |
O1A—C5A—C2A | 124.9 (4) | H4A1—C4A—H4A2 | 108.8 |
O1A—C5A—H5A | 117.6 | O2B—C12B—H12D | 109.5 |
C2A—C5A—H5A | 117.6 | O2B—C12B—H12E | 109.5 |
C8B—C9B—C10B | 120.8 (4) | H12D—C12B—H12E | 109.5 |
C8B—C9B—H9B | 119.6 | O2B—C12B—H12F | 109.5 |
C10B—C9B—H9B | 119.6 | H12D—C12B—H12F | 109.5 |
C2B—C3B—C4B | 117.9 (4) | H12E—C12B—H12F | 109.5 |
C12A—O2A—C11A—C10A | 4.8 (5) | C7B—C8B—C9B—C10B | −1.4 (7) |
C12A—O2A—C11A—C6A | −174.0 (3) | C4B—C3B—C2B—C5B | 176.0 (4) |
C7A—C6A—C11A—O2A | 176.6 (3) | C4B—C3B—C2B—C1B | −1.4 (6) |
C1A—C6A—C11A—O2A | −3.4 (4) | C6B—C1B—C2B—C3B | −113.9 (4) |
C7A—C6A—C11A—C10A | −2.2 (5) | S1B—C1B—C2B—C3B | 8.8 (4) |
C1A—C6A—C11A—C10A | 177.7 (3) | C6B—C1B—C2B—C5B | 68.6 (5) |
C4B—S1B—C1B—C2B | −10.7 (3) | S1B—C1B—C2B—C5B | −168.6 (3) |
C4B—S1B—C1B—C6B | 115.0 (3) | O2B—C11B—C10B—C9B | −179.0 (4) |
O2B—C11B—C6B—C7B | 177.7 (3) | C6B—C11B—C10B—C9B | −0.3 (5) |
C10B—C11B—C6B—C7B | −1.2 (5) | C8B—C9B—C10B—C11B | 1.6 (6) |
O2B—C11B—C6B—C1B | −1.3 (4) | C11B—C6B—C7B—C8B | 1.3 (5) |
C10B—C11B—C6B—C1B | 179.8 (3) | C1B—C6B—C7B—C8B | −179.7 (3) |
C2B—C1B—C6B—C7B | 18.9 (5) | C9B—C8B—C7B—C6B | −0.1 (6) |
S1B—C1B—C6B—C7B | −99.7 (3) | O1A—C5A—C2A—C3A | −177.7 (5) |
C2B—C1B—C6B—C11B | −162.2 (3) | O1A—C5A—C2A—C1A | 2.9 (7) |
S1B—C1B—C6B—C11B | 79.2 (3) | C6A—C1A—C2A—C3A | −111.8 (4) |
C10B—C11B—O2B—C12B | −3.4 (6) | S1A—C1A—C2A—C3A | 10.7 (4) |
C6B—C11B—O2B—C12B | 177.7 (4) | C6A—C1A—C2A—C5A | 67.6 (5) |
C7A—C6A—C1A—C2A | 20.1 (5) | S1A—C1A—C2A—C5A | −169.9 (3) |
C11A—C6A—C1A—C2A | −159.9 (3) | C5A—C2A—C3A—C4A | 179.7 (4) |
C7A—C6A—C1A—S1A | −97.8 (3) | C1A—C2A—C3A—C4A | −0.8 (6) |
C11A—C6A—C1A—S1A | 82.3 (4) | C2B—C3B—C4B—S1B | −6.9 (6) |
C4A—S1A—C1A—C2A | −13.5 (3) | C1B—S1B—C4B—C3B | 10.1 (4) |
C4A—S1A—C1A—C6A | 110.7 (3) | C10A—C9A—C8A—C7A | −2.6 (7) |
C11A—C6A—C7A—C8A | 2.1 (5) | C6A—C7A—C8A—C9A | 0.3 (6) |
C1A—C6A—C7A—C8A | −177.9 (4) | C3B—C2B—C5B—O1B | −173.9 (5) |
C8A—C9A—C10A—C11A | 2.5 (7) | C1B—C2B—C5B—O1B | 3.4 (7) |
O2A—C11A—C10A—C9A | −178.7 (4) | C2A—C3A—C4A—S1A | −9.7 (5) |
C6A—C11A—C10A—C9A | 0.0 (5) | C1A—S1A—C4A—C3A | 13.3 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C7A—H7A···O1B | 0.93 | 2.60 | 3.473 (4) | 157 |
C4B—H4B1···O1Bi | 0.97 | 2.69 | 3.202 (4) | 113 |
Symmetry code: (i) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C12H12O2S |
Mr | 220.28 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 6.8281 (6), 7.7624 (9), 11.8748 (12) |
α, β, γ (°) | 71.733 (3), 79.051 (3), 73.488 (3) |
V (Å3) | 569.50 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.46 × 0.42 × 0.38 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.886, 0.905 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5623, 4243, 3098 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.648 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.116, 1.00 |
No. of reflections | 4243 |
No. of parameters | 274 |
No. of restraints | 3 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.25, −0.31 |
Absolute structure | Flack (1983), 1657 Friedel pairs |
Absolute structure parameter | 0.02 (9) |
Computer programs: PROCESS-AUTO (Rigaku, 2006), CrystalStructure (Rigaku, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C7A—H7A···O1B | 0.930 | 2.595 | 3.473 (4) | 157 |
C4B—H4B1···O1Bi | 0.970 | 2.690 | 3.202 (4) | 113 |
Symmetry code: (i) x−1, y, z. |
Acknowledgements
The authors thank Professor Jian-Ming Gu of Zhejiang University.
References
Enders, D., Grondal, C. & Huttl, M. R. M. (2007). Angew. Chem. Int. Ed. 46, 1570–1581. Web of Science CrossRef CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (2006). PROCESS-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (2007). CrystalStructure. Rigaku Americas, The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Yu, X. & Wang, W. (2008). Org. Biomol. Chem. 6, 2037–2046. Web of Science CrossRef PubMed CAS Google Scholar
Zhu, J. J., Liu, K. K., Marx, M. A., Rheingold, A. L. & Yanovsky, A. (2009). Acta Cryst. E65, o2765. Web of Science CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
There has been growing interest in the study of domino or cascade reaction as it allows in principle the formation of multiple new bonds and stereocenters (Enders et al., 2007; Yu & Wang, 2008) in a one-pot system. Consequently, The title compound, (I), was synthesized as one of a series of thio-Michael-aldol products under investigation. In this paper, the absolute configuration and crystal structure of (I) has been presented.
The crystal structure of the title compoud (Fig. 1) contains two independent molecules (molecules A and B) in an asymmetric unit wherein C1A and C1B atoms have been established to exhibit R configuration. The main structure unit is a five-membered 2,5-dihydrothiophene ring with an aldehyde group and a 2-methoxyphenyl group. In molecule A, the atom S1A of the five-membered ring lies 0.315 (5)Å from the mean plane of C1A/C2A/C3A/C4A, the atoms O2A, C12A of the methoxy group lie -0.057 (5) and -0.213 (5) Å, respectively, from the benzene ring. The dihedral angel between the main planes of atoms CA1/C2A/C3A/C4A and the benzene ring is 75.45 (5)°. In molecule B, the atom S2B of the five-membered ring lies -0.249 (5)Å from the mean plane of C13B/C14B/C15B/C16B, the atoms O4B, C24B of the methoxy group lie 0.039 (5) and 0.001 (5) Å, respectively, from the benzene ring. The dihedral angel between the main plane formed by the atoms C13B/C14B/C15B/C16B and the benzene ring is 74.10 (5) °. The crystal structure is devoid of any classical hydrogen bonds. However, non-classical intermolecular interactions of the type C—H···O are present in the structure (Table 1).
The crystal structure of 2-morpholino-4-oxo-4,5-dihydrothiophene-3-carbonitrile which is closely related to the title compound has been reported recently (Zhu et al., 2009).