organic compounds
1-Bromo-4-chloro-2,5-dimethoxybenzene
aCollege of Pharmaceutical Sciences, Southwest University, Chong Qing 400716, People's Republic of China, bDepartment of Chemistry, University of Kentucky, Lexington, KY 40506-0055, USA, and cDepartment of Occupational and Environmental Health, The University of Iowa, 100 Oakdale Campus, 124 IREH, Iowa City, IA 52242-5000, USA
*Correspondence e-mail: hans-joachim-lehmler@uiowa.edu
The molecule of the title compound, C8H8BrClO2, sits on a crystallographic inversion centre, which ensures that the halogen sites are disordered, with exactly 50% Br and 50% Cl at each halogen site. The inversion renders the two methoxy groups equivalent. These groups lie almost in the plane of the aromatic ring system, making dihedral angles of 8.8 (4)° to the ring.
Related literature
For the synthesis of PCBs and PCB metabolites using the Suzuki coupling reaction, see: Lehmler & Robertson (2001); Song et al. (2008). For similar structures of halogenated methoxy-benzenes, see: Rissanen et al. (1988); Telu et al. (2008) and literature cited therein. For general background about PCBs, see: Hansen (1999); Robertson & Hansen (2001).
Experimental
Crystal data
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Data collection: COLLECT (Nonius, 1998); cell SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELX97 and local procedures.
Supporting information
https://doi.org/10.1107/S1600536810000504/si2231sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810000504/si2231Isup2.hkl
The title compound was synthesized by chlorination of 1-bromo-2,5-dimethoxy-benzene with HCl/H2O2 as chlorination reagent as described previously (Song et al., 2008). Crystals suitable for X-ray diffraction were grown by slow evaporation of a
of the title compound in CHCl3.H atoms were found in difference Fourier maps and subsequently placed in idealized positions with constrained C—H distances of 0.98 Å (CMeH) and 0.95 Å (CArH) with Uiso(H) values set to either 1.5Ueq or 1.2Ueq of the attached C atom respectively. For the disordered halogen sites, the distances were refined subject to a condition whereby the C—Cl distance was restrained (using DFIX in SHELXL97) to be 0.916 times the C—Br length (International Tables, vol C). The halogen displacement parameters were constrained to be equal (EADP in SHELXL97).
The title compound is a precursor for the synthesis of hydroxylated metabolites of polychlorinated biphenyls (PCBs) (Lehmler & Robertson, 2001; Song et al., 2008), a class of abundant, persistent organic pollutants in the global ecosystem (Hansen, 1999; Robertson & Hansen, 2001). The molecule of the title compound sits on a crystallographic inversion centre, which ensures that the Br/Cl sites are disordered exactly 50:50 in very nearly the same position. Furthermore, the inversion renders the two methoxy groups equivalent. The chlorine, bromine and the two methoxy groups essentially lie within the plane of the benzene ring, with the dihedral angles between the plane of the benzene ring (C1 through C3 and C1A through C3A) and the methoxy group being 8.8 (4)° (for both methoxy groups). This is comparable to the solid state conformation of the methoxy group of other methoxybenzenes with none or only one ortho substituent (Rissanen et al., 1988). Overall, these structural characteristics make the title compound a perfect precurusor for the synthesis of PCB derivatives using the Suzuki coupling reaction (Song et al., 2008).
For the synthesis of PCBs and PCB metabolites using the Suzuki coupling reaction, see: Lehmler & Robertson (2001); Song et al. (2008). For similar structures of halogenated methoxy-benzenes, see: Rissanen et al. (1988); Telu et al. (2008) and literature cited therein. For general background, see: Hansen (1999); Robertson & Hansen (2001).
Data collection: COLLECT (Nonius, 1998); cell
SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELX97 (Sheldrick, 2008) and local procedures.C8H8BrClO2 | F(000) = 248 |
Mr = 251.50 | Dx = 1.836 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1051 reflections |
a = 6.3804 (7) Å | θ = 1.0–27.5° |
b = 8.2586 (10) Å | µ = 4.77 mm−1 |
c = 8.6337 (11) Å | T = 90 K |
β = 90.853 (6)° | Block, colourless |
V = 454.89 (9) Å3 | 0.25 × 0.22 × 0.22 mm |
Z = 2 |
Nonius KappaCCD diffractometer | 1021 independent reflections |
Radiation source: fine-focus sealed tube | 824 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
Detector resolution: 18 pixels mm-1 | θmax = 27.3°, θmin = 3.4° |
ω scans at fixed χ = 55° | h = −8→8 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −10→10 |
Tmin = 0.310, Tmax = 0.350 | l = −11→11 |
1938 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.069 | w = 1/[σ2(Fo2) + (0.0274P)2 + 0.2316P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
1021 reflections | Δρmax = 0.57 e Å−3 |
61 parameters | Δρmin = −0.49 e Å−3 |
2 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.010 (2) |
C8H8BrClO2 | V = 454.89 (9) Å3 |
Mr = 251.50 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 6.3804 (7) Å | µ = 4.77 mm−1 |
b = 8.2586 (10) Å | T = 90 K |
c = 8.6337 (11) Å | 0.25 × 0.22 × 0.22 mm |
β = 90.853 (6)° |
Nonius KappaCCD diffractometer | 1021 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 824 reflections with I > 2σ(I) |
Tmin = 0.310, Tmax = 0.350 | Rint = 0.032 |
1938 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 2 restraints |
wR(F2) = 0.069 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.57 e Å−3 |
1021 reflections | Δρmin = −0.49 e Å−3 |
61 parameters |
Experimental. The crystals were of surprisingly poor quality, with diffraction spots around 3° wide. Nevertheless, because the cell is quite small there were no problems with reflection overlap. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The structure straddles an inversion centre but the molecule itself does not possess inversion point symmetry, thus it is forced to be disordered in the crystal. This disorder places Cl and Br atoms at 50% occupancy in essentially the same position. For refinement, the C—Cl distance was restrained to be 0.916 times that of the C—Br distance. The ratio used was taken from the International Tables volume C. Further, anisotropic displacement parameters for the Br and Cl atoms were made equal. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br1 | 0.7756 (12) | 0.2627 (9) | 0.7207 (9) | 0.0235 (3) | 0.50 |
Cl1 | 0.760 (3) | 0.271 (2) | 0.711 (2) | 0.0235 (3) | 0.50 |
O1 | 0.6036 (3) | 0.5566 (2) | 0.19443 (19) | 0.0247 (4) | |
C1 | 0.6144 (4) | 0.3987 (3) | 0.5927 (3) | 0.0212 (6) | |
C2 | 0.6749 (4) | 0.4217 (3) | 0.4409 (3) | 0.0213 (6) | |
H2 | 0.7945 | 0.3673 | 0.4023 | 0.026* | |
C3 | 0.5597 (4) | 0.5244 (3) | 0.3457 (3) | 0.0208 (6) | |
C4 | 0.7634 (4) | 0.4604 (3) | 0.1242 (3) | 0.0281 (6) | |
H4A | 0.8990 | 0.4839 | 0.1740 | 0.042* | |
H4B | 0.7701 | 0.4861 | 0.0136 | 0.042* | |
H4C | 0.7302 | 0.3454 | 0.1371 | 0.042* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0261 (12) | 0.0218 (8) | 0.0226 (10) | 0.0081 (6) | −0.0047 (6) | 0.0023 (5) |
Cl1 | 0.0261 (12) | 0.0218 (8) | 0.0226 (10) | 0.0081 (6) | −0.0047 (6) | 0.0023 (5) |
O1 | 0.0299 (11) | 0.0221 (10) | 0.0222 (10) | 0.0029 (8) | 0.0045 (8) | 0.0016 (7) |
C1 | 0.0221 (14) | 0.0181 (13) | 0.0232 (14) | −0.0004 (10) | −0.0038 (10) | −0.0013 (10) |
C2 | 0.0214 (14) | 0.0165 (13) | 0.0259 (14) | 0.0000 (10) | 0.0005 (10) | −0.0043 (10) |
C3 | 0.0230 (14) | 0.0162 (12) | 0.0232 (13) | −0.0037 (10) | 0.0012 (10) | −0.0016 (10) |
C4 | 0.0278 (16) | 0.0314 (15) | 0.0254 (15) | 0.0043 (12) | 0.0069 (12) | −0.0011 (12) |
Br1—C1 | 1.872 (4) | C2—C3 | 1.385 (3) |
Cl1—C1 | 1.727 (9) | C2—H2 | 0.9500 |
O1—C3 | 1.366 (3) | C3—C1i | 1.392 (3) |
O1—C4 | 1.434 (3) | C4—H4A | 0.9800 |
C1—C2 | 1.385 (3) | C4—H4B | 0.9800 |
C1—C3i | 1.392 (3) | C4—H4C | 0.9800 |
C3—O1—C4 | 116.95 (19) | O1—C3—C2 | 124.9 (2) |
C2—C1—C3i | 122.3 (2) | O1—C3—C1i | 116.9 (2) |
C2—C1—Cl1 | 119.2 (8) | C2—C3—C1i | 118.2 (2) |
C3i—C1—Cl1 | 118.5 (8) | O1—C4—H4A | 109.5 |
C2—C1—Br1 | 118.8 (3) | O1—C4—H4B | 109.5 |
C3i—C1—Br1 | 118.9 (3) | H4A—C4—H4B | 109.5 |
C3—C2—C1 | 119.5 (2) | O1—C4—H4C | 109.5 |
C3—C2—H2 | 120.2 | H4A—C4—H4C | 109.5 |
C1—C2—H2 | 120.2 | H4B—C4—H4C | 109.5 |
C3i—C1—C2—C3 | 0.1 (4) | C4—O1—C3—C1i | −171.2 (2) |
Cl1—C1—C2—C3 | −179.7 (8) | C1—C2—C3—O1 | −180.0 (2) |
Br1—C1—C2—C3 | −178.7 (3) | C1—C2—C3—C1i | −0.1 (4) |
C4—O1—C3—C2 | 8.7 (4) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C8H8BrClO2 |
Mr | 251.50 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 90 |
a, b, c (Å) | 6.3804 (7), 8.2586 (10), 8.6337 (11) |
β (°) | 90.853 (6) |
V (Å3) | 454.89 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 4.77 |
Crystal size (mm) | 0.25 × 0.22 × 0.22 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.310, 0.350 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 1938, 1021, 824 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.645 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.069, 1.04 |
No. of reflections | 1021 |
No. of parameters | 61 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.57, −0.49 |
Computer programs: COLLECT (Nonius, 1998), SCALEPACK (Otwinowski & Minor, 1997), DENZO-SMN (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP in SHELXTL (Sheldrick, 2008), SHELX97 (Sheldrick, 2008) and local procedures.
Acknowledgements
This research was supported by grants ES05605, ES012475, ES013661 from the National Institute of Environmental Health Sciences, NIH, (HJL) and SWUB2008077 from the Science Foundation of Southwest University, China (YS).
References
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The title compound is a precursor for the synthesis of hydroxylated metabolites of polychlorinated biphenyls (PCBs) (Lehmler & Robertson, 2001; Song et al., 2008), a class of abundant, persistent organic pollutants in the global ecosystem (Hansen, 1999; Robertson & Hansen, 2001). The molecule of the title compound sits on a crystallographic inversion centre, which ensures that the Br/Cl sites are disordered exactly 50:50 in very nearly the same position. Furthermore, the inversion renders the two methoxy groups equivalent. The chlorine, bromine and the two methoxy groups essentially lie within the plane of the benzene ring, with the dihedral angles between the plane of the benzene ring (C1 through C3 and C1A through C3A) and the methoxy group being 8.8 (4)° (for both methoxy groups). This is comparable to the solid state conformation of the methoxy group of other methoxybenzenes with none or only one ortho substituent (Rissanen et al., 1988). Overall, these structural characteristics make the title compound a perfect precurusor for the synthesis of PCB derivatives using the Suzuki coupling reaction (Song et al., 2008).