organic compounds
2-Aminopyridinium trifluoroacetate
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The 5H7N2+·C2F3O2−, contains four independent 2-aminopyridinium cations and four independent trifluoroacetate anions. In the these ions are linked by N—H⋯O hydrogen bonds, forming four cation–anion pairs each containing an R22(8) ring motif. The ion pairs are linked into two independent chains along [100] by N—H⋯O hydrogen bonds. In addition, C—H⋯O and C—H⋯F hydrogen bonds and π⋯π interactions [centoid–centroid separation = 3.6007 (17) Å] are observed.
of the title compound, CRelated literature
For background to the chemistry of substituted pyridines, see: Pozharski et al. (1997); Katritzky et al. (1996). For related structures, see: Chao et al. (1975); Gellert & Hsu (1988); Demir et al. (2005); Jebas et al. (2006); Rademeyer (2007); Windholz (1976). For details of hydrogen bonding, see: Jeffrey & Saenger (1991); Jeffrey (1997); Scheiner (1997). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810006392/ci5036sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810006392/ci5036Isup2.hkl
To a hot methanol solution (20 ml) of 2-aminopyridine (47 mg, Aldrich) was added a few drops of trifluoroacetic acid. The solution was warmed over a water bath for a few minutes. The resulting solution was allowed to cool slowly to room temperature. Crystals of the title compound appeared from the mother liquor after a few days.
All the H atoms were located in a difference Fourier map and allowed to refine freely [N–H = 0.83 (4)–1.02 (4) Å, C–H = 0.91 (3)–1.08 (3) Å].
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 30% probability level. H atoms have been omitted for clarity. | |
Fig. 2. The crystal packing of the title compound, showing hydrogen-bonded (dashed lines) networks. |
C5H7N2+·C2F3O2− | F(000) = 1696 |
Mr = 208.15 | Dx = 1.610 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3066 reflections |
a = 11.4641 (15) Å | θ = 2.7–24.0° |
b = 10.0221 (13) Å | µ = 0.16 mm−1 |
c = 29.928 (4) Å | T = 100 K |
β = 92.918 (3)° | Plate, colourless |
V = 3434.1 (8) Å3 | 0.35 × 0.17 × 0.04 mm |
Z = 16 |
Bruker APEX DUO CCD area-detector diffractometer | 6732 independent reflections |
Radiation source: fine-focus sealed tube | 4154 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.072 |
ϕ and ω scans | θmax = 26.0°, θmin = 1.4° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −14→12 |
Tmin = 0.947, Tmax = 0.994 | k = −12→12 |
28669 measured reflections | l = −36→36 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.141 | All H-atom parameters refined |
S = 1.02 | w = 1/[σ2(Fo2) + (0.072P)2] where P = (Fo2 + 2Fc2)/3 |
6732 reflections | (Δ/σ)max = 0.001 |
617 parameters | Δρmax = 0.44 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
C5H7N2+·C2F3O2− | V = 3434.1 (8) Å3 |
Mr = 208.15 | Z = 16 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.4641 (15) Å | µ = 0.16 mm−1 |
b = 10.0221 (13) Å | T = 100 K |
c = 29.928 (4) Å | 0.35 × 0.17 × 0.04 mm |
β = 92.918 (3)° |
Bruker APEX DUO CCD area-detector diffractometer | 6732 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4154 reflections with I > 2σ(I) |
Tmin = 0.947, Tmax = 0.994 | Rint = 0.072 |
28669 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.141 | All H-atom parameters refined |
S = 1.02 | Δρmax = 0.44 e Å−3 |
6732 reflections | Δρmin = −0.44 e Å−3 |
617 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1A | 0.53238 (18) | 0.6375 (2) | 0.03514 (8) | 0.0211 (5) | |
N2A | 0.7286 (2) | 0.6627 (3) | 0.02401 (9) | 0.0266 (6) | |
C1A | 0.4393 (2) | 0.5710 (3) | 0.05182 (10) | 0.0248 (7) | |
C2A | 0.4546 (3) | 0.4564 (3) | 0.07439 (10) | 0.0271 (7) | |
C3A | 0.5680 (2) | 0.4031 (3) | 0.08038 (10) | 0.0246 (7) | |
C4A | 0.6604 (2) | 0.4684 (3) | 0.06365 (10) | 0.0248 (7) | |
C5A | 0.6430 (2) | 0.5902 (3) | 0.04029 (9) | 0.0218 (6) | |
F1A | −0.04773 (14) | 0.44273 (16) | 0.07172 (5) | 0.0314 (4) | |
F2A | 0.06503 (16) | 0.56750 (19) | 0.11269 (6) | 0.0419 (5) | |
F3A | 0.13664 (14) | 0.40701 (17) | 0.07542 (6) | 0.0347 (4) | |
O1A | −0.01983 (15) | 0.65268 (18) | 0.01836 (6) | 0.0218 (4) | |
O2A | 0.17434 (15) | 0.6235 (2) | 0.02589 (7) | 0.0289 (5) | |
C6A | 0.0564 (2) | 0.5042 (3) | 0.07342 (9) | 0.0231 (6) | |
C7A | 0.0723 (2) | 0.6020 (3) | 0.03494 (9) | 0.0187 (6) | |
N1B | 0.25015 (19) | 0.0690 (2) | 0.22063 (8) | 0.0223 (5) | |
N2B | 0.4426 (2) | 0.0544 (3) | 0.24561 (10) | 0.0327 (7) | |
C1B | 0.1593 (3) | 0.1252 (3) | 0.19635 (10) | 0.0290 (7) | |
C2B | 0.1754 (3) | 0.2363 (3) | 0.17180 (11) | 0.0352 (8) | |
C3B | 0.2877 (3) | 0.2902 (3) | 0.17187 (11) | 0.0365 (8) | |
C4B | 0.3786 (3) | 0.2344 (3) | 0.19497 (11) | 0.0342 (8) | |
C5B | 0.3600 (2) | 0.1179 (3) | 0.22101 (10) | 0.0265 (7) | |
F1B | 0.19140 (15) | 0.79602 (17) | 0.16527 (6) | 0.0357 (4) | |
F2B | 0.31202 (16) | 0.64578 (17) | 0.14540 (6) | 0.0391 (5) | |
F3B | 0.36394 (14) | 0.78893 (16) | 0.19615 (6) | 0.0326 (4) | |
O1B | 0.12827 (16) | 0.5810 (2) | 0.21178 (7) | 0.0306 (5) | |
O2B | 0.30890 (15) | 0.57592 (19) | 0.24392 (6) | 0.0237 (5) | |
C6B | 0.2742 (2) | 0.7125 (3) | 0.18099 (10) | 0.0240 (7) | |
C7B | 0.2322 (2) | 0.6146 (3) | 0.21597 (9) | 0.0220 (6) | |
N1C | 0.97689 (18) | 0.1324 (2) | 0.03769 (8) | 0.0195 (5) | |
N2C | 0.7775 (2) | 0.1534 (3) | 0.02793 (9) | 0.0234 (6) | |
C1C | 1.0764 (2) | 0.0718 (3) | 0.05421 (10) | 0.0233 (7) | |
C2C | 1.0705 (3) | −0.0409 (3) | 0.07859 (10) | 0.0259 (7) | |
C3C | 0.9596 (3) | −0.0928 (3) | 0.08655 (10) | 0.0259 (7) | |
C4C | 0.8602 (2) | −0.0311 (3) | 0.07060 (10) | 0.0229 (6) | |
C5C | 0.8686 (2) | 0.0864 (3) | 0.04501 (9) | 0.0187 (6) | |
F1C | 0.70647 (15) | 0.14098 (17) | 0.14889 (6) | 0.0361 (5) | |
F2C | 0.83699 (16) | 0.28461 (17) | 0.13276 (6) | 0.0383 (5) | |
F3C | 0.87288 (13) | 0.14044 (16) | 0.18453 (5) | 0.0290 (4) | |
O1C | 0.64277 (16) | 0.3622 (2) | 0.19178 (7) | 0.0296 (5) | |
O2C | 0.81484 (15) | 0.35674 (19) | 0.23072 (6) | 0.0243 (5) | |
C6C | 0.7897 (2) | 0.2205 (3) | 0.16693 (9) | 0.0235 (7) | |
C7C | 0.7438 (2) | 0.3217 (3) | 0.20015 (9) | 0.0215 (6) | |
N1D | 0.75292 (18) | 0.8656 (2) | 0.20606 (8) | 0.0203 (5) | |
N2D | 0.9457 (2) | 0.8664 (3) | 0.23238 (9) | 0.0272 (6) | |
C1D | 0.6606 (2) | 0.8152 (3) | 0.18099 (10) | 0.0252 (7) | |
C2D | 0.6725 (3) | 0.7041 (3) | 0.15644 (10) | 0.0293 (7) | |
C3D | 0.7819 (3) | 0.6428 (3) | 0.15695 (10) | 0.0283 (7) | |
C4D | 0.8744 (3) | 0.6922 (3) | 0.18151 (10) | 0.0253 (7) | |
C5D | 0.8595 (2) | 0.8081 (3) | 0.20725 (9) | 0.0216 (6) | |
F1D | 0.38550 (14) | 0.89359 (17) | 0.07557 (6) | 0.0363 (5) | |
F2D | 0.45932 (18) | 1.0533 (2) | 0.11547 (6) | 0.0484 (5) | |
F3D | 0.56876 (14) | 0.93681 (17) | 0.07456 (6) | 0.0355 (5) | |
O1D | 0.33350 (16) | 1.1182 (2) | 0.02989 (8) | 0.0394 (6) | |
O2D | 0.52497 (15) | 1.14436 (19) | 0.02069 (6) | 0.0238 (5) | |
C6D | 0.4630 (2) | 0.9937 (3) | 0.07548 (10) | 0.0261 (7) | |
C7D | 0.4378 (2) | 1.0945 (3) | 0.03804 (10) | 0.0245 (7) | |
H1A | 0.364 (3) | 0.615 (3) | 0.0418 (9) | 0.026 (8)* | |
H2A | 0.383 (3) | 0.406 (3) | 0.0863 (11) | 0.050 (10)* | |
H3A | 0.579 (3) | 0.315 (3) | 0.0972 (10) | 0.037 (9)* | |
H4A | 0.748 (3) | 0.435 (3) | 0.0678 (9) | 0.031 (8)* | |
H1NA | 0.525 (2) | 0.710 (3) | 0.0166 (9) | 0.016 (7)* | |
H2NA | 0.697 (4) | 0.743 (4) | 0.0063 (13) | 0.080 (14)* | |
H3NA | 0.799 (3) | 0.641 (3) | 0.0250 (11) | 0.052 (11)* | |
H1B | 0.076 (3) | 0.081 (3) | 0.2000 (10) | 0.042 (9)* | |
H2B | 0.100 (3) | 0.280 (3) | 0.1548 (11) | 0.057 (11)* | |
H3B | 0.297 (3) | 0.364 (3) | 0.1548 (11) | 0.041 (10)* | |
H4B | 0.466 (3) | 0.266 (3) | 0.1957 (10) | 0.044 (9)* | |
H1NB | 0.240 (3) | −0.011 (3) | 0.2385 (9) | 0.031 (9)* | |
H2NB | 0.430 (3) | −0.007 (4) | 0.2673 (11) | 0.043 (11)* | |
H3NB | 0.511 (3) | 0.087 (3) | 0.2509 (10) | 0.038 (10)* | |
H1C | 1.148 (2) | 0.110 (3) | 0.0459 (9) | 0.022 (8)* | |
H2C | 1.139 (3) | −0.086 (3) | 0.0906 (10) | 0.035 (9)* | |
H3C | 0.955 (2) | −0.174 (3) | 0.1037 (10) | 0.029 (8)* | |
H4C | 0.787 (3) | −0.064 (3) | 0.0765 (9) | 0.027 (8)* | |
H1NC | 0.984 (3) | 0.202 (3) | 0.0213 (10) | 0.029 (9)* | |
H2NC | 0.792 (3) | 0.222 (3) | 0.0099 (11) | 0.049 (11)* | |
H3NC | 0.701 (3) | 0.121 (4) | 0.0304 (12) | 0.062 (12)* | |
H1D | 0.583 (2) | 0.864 (3) | 0.1846 (9) | 0.023 (7)* | |
H2D | 0.603 (3) | 0.670 (3) | 0.1391 (10) | 0.034 (8)* | |
H3D | 0.791 (2) | 0.560 (3) | 0.1406 (9) | 0.027 (8)* | |
H4D | 0.961 (2) | 0.650 (3) | 0.1830 (9) | 0.027 (8)* | |
H1ND | 0.746 (2) | 0.938 (3) | 0.2247 (9) | 0.026 (8)* | |
H2ND | 0.940 (2) | 0.937 (3) | 0.2533 (10) | 0.026 (8)* | |
H3ND | 1.009 (3) | 0.826 (3) | 0.2377 (10) | 0.032 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1A | 0.0145 (12) | 0.0229 (14) | 0.0259 (14) | 0.0006 (10) | 0.0017 (10) | −0.0020 (12) |
N2A | 0.0104 (12) | 0.0265 (15) | 0.0431 (17) | 0.0006 (10) | 0.0041 (11) | −0.0005 (12) |
C1A | 0.0138 (14) | 0.0332 (18) | 0.0275 (17) | −0.0003 (12) | 0.0023 (12) | −0.0038 (14) |
C2A | 0.0248 (16) | 0.0342 (18) | 0.0227 (17) | −0.0062 (13) | 0.0035 (12) | −0.0053 (14) |
C3A | 0.0236 (15) | 0.0272 (17) | 0.0230 (17) | −0.0034 (13) | 0.0014 (12) | −0.0061 (14) |
C4A | 0.0209 (15) | 0.0246 (16) | 0.0285 (17) | 0.0018 (12) | −0.0021 (12) | −0.0022 (14) |
C5A | 0.0171 (14) | 0.0240 (16) | 0.0246 (16) | −0.0012 (11) | 0.0020 (11) | −0.0063 (13) |
F1A | 0.0229 (9) | 0.0390 (11) | 0.0329 (10) | −0.0065 (7) | 0.0054 (7) | 0.0108 (8) |
F2A | 0.0512 (12) | 0.0532 (13) | 0.0209 (10) | −0.0013 (9) | −0.0012 (8) | −0.0068 (9) |
F3A | 0.0275 (9) | 0.0362 (10) | 0.0404 (11) | 0.0104 (8) | 0.0016 (8) | 0.0155 (9) |
O1A | 0.0134 (9) | 0.0236 (11) | 0.0283 (11) | 0.0014 (8) | 0.0007 (8) | 0.0043 (9) |
O2A | 0.0123 (10) | 0.0337 (12) | 0.0409 (13) | −0.0013 (8) | 0.0015 (8) | 0.0128 (10) |
C6A | 0.0167 (14) | 0.0278 (17) | 0.0247 (17) | −0.0001 (12) | −0.0005 (11) | 0.0022 (14) |
C7A | 0.0153 (14) | 0.0185 (15) | 0.0222 (15) | −0.0001 (11) | −0.0010 (11) | −0.0006 (12) |
N1B | 0.0181 (12) | 0.0207 (13) | 0.0285 (14) | −0.0021 (10) | 0.0046 (10) | 0.0000 (11) |
N2B | 0.0184 (14) | 0.0388 (17) | 0.0407 (18) | −0.0071 (12) | 0.0006 (12) | −0.0067 (15) |
C1B | 0.0272 (16) | 0.0269 (17) | 0.0329 (19) | 0.0056 (13) | 0.0017 (13) | −0.0004 (14) |
C2B | 0.046 (2) | 0.0289 (19) | 0.0311 (19) | 0.0078 (15) | 0.0098 (15) | 0.0050 (15) |
C3B | 0.056 (2) | 0.0247 (19) | 0.031 (2) | 0.0006 (16) | 0.0200 (16) | 0.0015 (16) |
C4B | 0.043 (2) | 0.0269 (18) | 0.0346 (19) | −0.0140 (15) | 0.0184 (15) | −0.0088 (15) |
C5B | 0.0237 (16) | 0.0253 (17) | 0.0312 (18) | −0.0036 (13) | 0.0088 (13) | −0.0102 (14) |
F1B | 0.0408 (11) | 0.0322 (10) | 0.0334 (11) | 0.0069 (8) | −0.0045 (8) | 0.0080 (8) |
F2B | 0.0535 (12) | 0.0365 (11) | 0.0288 (11) | 0.0006 (9) | 0.0179 (8) | −0.0056 (9) |
F3B | 0.0310 (10) | 0.0300 (10) | 0.0369 (11) | −0.0055 (8) | 0.0029 (8) | 0.0029 (8) |
O1B | 0.0203 (11) | 0.0425 (13) | 0.0286 (12) | −0.0044 (9) | −0.0027 (8) | 0.0026 (10) |
O2B | 0.0171 (10) | 0.0271 (11) | 0.0267 (11) | 0.0021 (8) | −0.0008 (8) | 0.0026 (9) |
C6B | 0.0215 (15) | 0.0244 (16) | 0.0258 (17) | 0.0021 (12) | −0.0011 (12) | −0.0041 (13) |
C7B | 0.0207 (15) | 0.0248 (16) | 0.0205 (16) | 0.0028 (12) | 0.0023 (12) | −0.0052 (13) |
N1C | 0.0163 (12) | 0.0183 (13) | 0.0239 (14) | 0.0000 (9) | 0.0024 (10) | 0.0029 (11) |
N2C | 0.0123 (12) | 0.0249 (15) | 0.0330 (16) | −0.0029 (10) | 0.0013 (10) | 0.0035 (12) |
C1C | 0.0156 (15) | 0.0299 (17) | 0.0245 (16) | 0.0007 (12) | 0.0013 (11) | 0.0016 (13) |
C2C | 0.0219 (15) | 0.0303 (18) | 0.0253 (17) | 0.0084 (13) | 0.0003 (12) | 0.0050 (14) |
C3C | 0.0346 (17) | 0.0183 (16) | 0.0254 (17) | 0.0011 (13) | 0.0074 (13) | 0.0061 (13) |
C4C | 0.0198 (15) | 0.0208 (16) | 0.0287 (17) | −0.0012 (12) | 0.0071 (12) | 0.0006 (13) |
C5C | 0.0159 (14) | 0.0187 (15) | 0.0216 (15) | −0.0028 (11) | 0.0025 (11) | −0.0027 (12) |
F1C | 0.0356 (10) | 0.0326 (10) | 0.0391 (11) | −0.0034 (8) | −0.0100 (8) | −0.0083 (9) |
F2C | 0.0545 (12) | 0.0334 (11) | 0.0283 (11) | −0.0007 (9) | 0.0146 (8) | 0.0082 (8) |
F3C | 0.0258 (9) | 0.0295 (10) | 0.0316 (10) | 0.0060 (7) | 0.0007 (7) | 0.0014 (8) |
O1C | 0.0192 (11) | 0.0336 (12) | 0.0354 (13) | 0.0032 (9) | −0.0037 (9) | 0.0000 (10) |
O2C | 0.0172 (10) | 0.0266 (11) | 0.0288 (12) | −0.0003 (8) | −0.0025 (8) | −0.0050 (9) |
C6C | 0.0214 (15) | 0.0242 (16) | 0.0247 (16) | −0.0021 (12) | −0.0011 (12) | 0.0063 (13) |
C7C | 0.0197 (15) | 0.0220 (16) | 0.0228 (16) | −0.0031 (11) | 0.0017 (12) | 0.0039 (12) |
N1D | 0.0162 (12) | 0.0202 (13) | 0.0244 (14) | 0.0004 (10) | 0.0007 (10) | −0.0004 (11) |
N2D | 0.0155 (13) | 0.0337 (16) | 0.0322 (16) | 0.0024 (11) | −0.0021 (11) | 0.0024 (13) |
C1D | 0.0200 (15) | 0.0279 (17) | 0.0277 (17) | −0.0038 (12) | 0.0007 (12) | 0.0021 (14) |
C2D | 0.0313 (17) | 0.0258 (17) | 0.0310 (18) | −0.0058 (13) | 0.0026 (14) | −0.0024 (14) |
C3D | 0.0374 (18) | 0.0200 (17) | 0.0283 (18) | −0.0011 (14) | 0.0080 (14) | −0.0003 (14) |
C4D | 0.0295 (17) | 0.0217 (16) | 0.0256 (17) | 0.0053 (13) | 0.0093 (13) | 0.0057 (13) |
C5D | 0.0199 (15) | 0.0238 (16) | 0.0214 (16) | 0.0005 (11) | 0.0052 (11) | 0.0088 (12) |
F1D | 0.0292 (10) | 0.0351 (10) | 0.0449 (12) | −0.0034 (8) | 0.0047 (8) | 0.0097 (9) |
F2D | 0.0641 (14) | 0.0538 (13) | 0.0277 (11) | 0.0036 (10) | 0.0064 (9) | −0.0105 (10) |
F3D | 0.0227 (9) | 0.0446 (11) | 0.0386 (11) | 0.0077 (8) | −0.0039 (7) | 0.0054 (9) |
O1D | 0.0132 (11) | 0.0437 (14) | 0.0617 (16) | 0.0031 (9) | 0.0068 (10) | 0.0201 (12) |
O2D | 0.0146 (10) | 0.0283 (11) | 0.0287 (12) | −0.0023 (8) | 0.0046 (8) | −0.0017 (9) |
C6D | 0.0208 (15) | 0.0291 (17) | 0.0287 (18) | −0.0018 (12) | 0.0025 (12) | −0.0077 (14) |
C7D | 0.0149 (14) | 0.0272 (17) | 0.0315 (17) | 0.0002 (12) | 0.0036 (12) | −0.0035 (14) |
N1A—C5A | 1.355 (3) | N1C—C5C | 1.353 (3) |
N1A—C1A | 1.373 (4) | N1C—C1C | 1.363 (3) |
N1A—H1NA | 0.92 (3) | N1C—H1NC | 0.86 (3) |
N2A—C5A | 1.334 (4) | N2C—C5C | 1.323 (3) |
N2A—H2NA | 1.02 (4) | N2C—H2NC | 0.90 (3) |
N2A—H3NA | 0.83 (4) | N2C—H3NC | 0.94 (4) |
C1A—C2A | 1.340 (4) | C1C—C2C | 1.348 (4) |
C1A—H1A | 1.00 (3) | C1C—H1C | 0.95 (3) |
C2A—C3A | 1.409 (4) | C2C—C3C | 1.406 (4) |
C2A—H2A | 1.04 (3) | C2C—H2C | 0.96 (3) |
C3A—C4A | 1.362 (4) | C3C—C4C | 1.361 (4) |
C3A—H3A | 1.02 (3) | C3C—H3C | 0.97 (3) |
C4A—C5A | 1.416 (4) | C4C—C5C | 1.410 (4) |
C4A—H4A | 1.06 (3) | C4C—H4C | 0.92 (3) |
F1A—C6A | 1.342 (3) | F1C—C6C | 1.336 (3) |
F2A—C6A | 1.335 (3) | F2C—C6C | 1.345 (3) |
F3A—C6A | 1.339 (3) | F3C—C6C | 1.334 (3) |
O1A—C7A | 1.252 (3) | O1C—C7C | 1.240 (3) |
O2A—C7A | 1.233 (3) | O2C—C7C | 1.244 (3) |
C6A—C7A | 1.531 (4) | C6C—C7C | 1.533 (4) |
N1B—C5B | 1.351 (3) | N1D—C5D | 1.349 (3) |
N1B—C1B | 1.361 (4) | N1D—C1D | 1.363 (3) |
N1B—H1NB | 0.97 (3) | N1D—H1ND | 0.92 (3) |
N2B—C5B | 1.331 (4) | N2D—C5D | 1.346 (4) |
N2B—H2NB | 0.91 (3) | N2D—H2ND | 0.95 (3) |
N2B—H3NB | 0.86 (3) | N2D—H3ND | 0.84 (3) |
C1B—C2B | 1.352 (4) | C1D—C2D | 1.345 (4) |
C1B—H1B | 1.06 (3) | C1D—H1D | 1.03 (3) |
C2B—C3B | 1.396 (5) | C2D—C3D | 1.395 (4) |
C2B—H2B | 1.07 (3) | C2D—H2D | 0.99 (3) |
C3B—C4B | 1.342 (5) | C3D—C4D | 1.353 (4) |
C3B—H3B | 0.91 (3) | C3D—H3D | 0.97 (3) |
C4B—C5B | 1.426 (4) | C4D—C5D | 1.409 (4) |
C4B—H4B | 1.05 (3) | C4D—H4D | 1.08 (3) |
F1B—C6B | 1.334 (3) | F1D—C6D | 1.340 (3) |
F2B—C6B | 1.348 (3) | F2D—C6D | 1.340 (3) |
F3B—C6B | 1.343 (3) | F3D—C6D | 1.341 (3) |
O1B—C7B | 1.238 (3) | O1D—C7D | 1.231 (3) |
O2B—C7B | 1.245 (3) | O2D—C7D | 1.253 (3) |
C6B—C7B | 1.530 (4) | C6D—C7D | 1.526 (4) |
C5A—N1A—C1A | 121.9 (3) | C5C—N1C—C1C | 123.2 (3) |
C5A—N1A—H1NA | 113.5 (17) | C5C—N1C—H1NC | 119 (2) |
C1A—N1A—H1NA | 124.1 (17) | C1C—N1C—H1NC | 118 (2) |
C5A—N2A—H2NA | 112 (2) | C5C—N2C—H2NC | 117 (2) |
C5A—N2A—H3NA | 125 (2) | C5C—N2C—H3NC | 121 (2) |
H2NA—N2A—H3NA | 123 (3) | H2NC—N2C—H3NC | 121 (3) |
C2A—C1A—N1A | 121.1 (3) | C2C—C1C—N1C | 120.4 (3) |
C2A—C1A—H1A | 127.9 (16) | C2C—C1C—H1C | 123.0 (16) |
N1A—C1A—H1A | 110.7 (16) | N1C—C1C—H1C | 116.5 (16) |
C1A—C2A—C3A | 119.0 (3) | C1C—C2C—C3C | 118.2 (3) |
C1A—C2A—H2A | 120.0 (18) | C1C—C2C—H2C | 122.2 (18) |
C3A—C2A—H2A | 120.9 (18) | C3C—C2C—H2C | 119.6 (18) |
C4A—C3A—C2A | 120.1 (3) | C4C—C3C—C2C | 121.4 (3) |
C4A—C3A—H3A | 121.1 (17) | C4C—C3C—H3C | 119.9 (17) |
C2A—C3A—H3A | 118.8 (17) | C2C—C3C—H3C | 118.7 (17) |
C3A—C4A—C5A | 120.2 (3) | C3C—C4C—C5C | 119.4 (3) |
C3A—C4A—H4A | 123.7 (16) | C3C—C4C—H4C | 121.2 (18) |
C5A—C4A—H4A | 116.1 (16) | C5C—C4C—H4C | 119.4 (18) |
N2A—C5A—N1A | 118.0 (3) | N2C—C5C—N1C | 118.5 (3) |
N2A—C5A—C4A | 124.2 (3) | N2C—C5C—C4C | 124.0 (3) |
N1A—C5A—C4A | 117.8 (3) | N1C—C5C—C4C | 117.5 (2) |
F2A—C6A—F3A | 106.7 (2) | F3C—C6C—F1C | 106.4 (2) |
F2A—C6A—F1A | 106.1 (2) | F3C—C6C—F2C | 106.2 (2) |
F3A—C6A—F1A | 106.0 (2) | F1C—C6C—F2C | 106.6 (2) |
F2A—C6A—C7A | 110.6 (2) | F3C—C6C—C7C | 113.8 (2) |
F3A—C6A—C7A | 113.1 (2) | F1C—C6C—C7C | 113.3 (2) |
F1A—C6A—C7A | 113.9 (2) | F2C—C6C—C7C | 110.0 (2) |
O2A—C7A—O1A | 129.3 (3) | O1C—C7C—O2C | 128.8 (3) |
O2A—C7A—C6A | 115.3 (2) | O1C—C7C—C6C | 115.7 (2) |
O1A—C7A—C6A | 115.3 (2) | O2C—C7C—C6C | 115.5 (2) |
C5B—N1B—C1B | 122.8 (3) | C5D—N1D—C1D | 122.2 (3) |
C5B—N1B—H1NB | 115.4 (17) | C5D—N1D—H1ND | 115.3 (18) |
C1B—N1B—H1NB | 121.8 (17) | C1D—N1D—H1ND | 122.3 (18) |
C5B—N2B—H2NB | 126 (2) | C5D—N2D—H2ND | 128.0 (17) |
C5B—N2B—H3NB | 122 (2) | C5D—N2D—H3ND | 120 (2) |
H2NB—N2B—H3NB | 108 (3) | H2ND—N2D—H3ND | 109 (3) |
C2B—C1B—N1B | 120.6 (3) | C2D—C1D—N1D | 120.6 (3) |
C2B—C1B—H1B | 123.2 (16) | C2D—C1D—H1D | 124.2 (15) |
N1B—C1B—H1B | 116.0 (16) | N1D—C1D—H1D | 115.0 (15) |
C1B—C2B—C3B | 118.0 (3) | C1D—C2D—C3D | 118.3 (3) |
C1B—C2B—H2B | 117.9 (19) | C1D—C2D—H2D | 118.3 (18) |
C3B—C2B—H2B | 124.0 (19) | C3D—C2D—H2D | 123.4 (18) |
C4B—C3B—C2B | 122.0 (3) | C4D—C3D—C2D | 121.6 (3) |
C4B—C3B—H3B | 121 (2) | C4D—C3D—H3D | 118.7 (17) |
C2B—C3B—H3B | 117 (2) | C2D—C3D—H3D | 119.6 (17) |
C3B—C4B—C5B | 119.3 (3) | C3D—C4D—C5D | 119.0 (3) |
C3B—C4B—H4B | 126.8 (17) | C3D—C4D—H4D | 124.8 (14) |
C5B—C4B—H4B | 113.9 (17) | C5D—C4D—H4D | 116.2 (14) |
N2B—C5B—N1B | 117.9 (3) | N2D—C5D—N1D | 117.9 (3) |
N2B—C5B—C4B | 124.9 (3) | N2D—C5D—C4D | 123.9 (3) |
N1B—C5B—C4B | 117.3 (3) | N1D—C5D—C4D | 118.2 (3) |
F1B—C6B—F3B | 106.3 (2) | F1D—C6D—F2D | 106.3 (2) |
F1B—C6B—F2B | 106.5 (2) | F1D—C6D—F3D | 106.4 (2) |
F3B—C6B—F2B | 106.2 (2) | F2D—C6D—F3D | 106.1 (2) |
F1B—C6B—C7B | 113.6 (2) | F1D—C6D—C7D | 113.4 (2) |
F3B—C6B—C7B | 113.4 (2) | F2D—C6D—C7D | 110.3 (2) |
F2B—C6B—C7B | 110.4 (2) | F3D—C6D—C7D | 113.8 (2) |
O1B—C7B—O2B | 128.8 (3) | O1D—C7D—O2D | 128.9 (3) |
O1B—C7B—C6B | 116.1 (2) | O1D—C7D—C6D | 114.7 (3) |
O2B—C7B—C6B | 115.0 (2) | O2D—C7D—C6D | 116.3 (2) |
C5A—N1A—C1A—C2A | 0.6 (4) | C5C—N1C—C1C—C2C | 1.1 (4) |
N1A—C1A—C2A—C3A | −0.9 (4) | N1C—C1C—C2C—C3C | −0.3 (4) |
C1A—C2A—C3A—C4A | 0.5 (4) | C1C—C2C—C3C—C4C | −0.6 (5) |
C2A—C3A—C4A—C5A | 0.2 (4) | C2C—C3C—C4C—C5C | 0.9 (4) |
C1A—N1A—C5A—N2A | −178.4 (3) | C1C—N1C—C5C—N2C | 179.2 (3) |
C1A—N1A—C5A—C4A | 0.0 (4) | C1C—N1C—C5C—C4C | −0.8 (4) |
C3A—C4A—C5A—N2A | 177.9 (3) | C3C—C4C—C5C—N2C | 179.8 (3) |
C3A—C4A—C5A—N1A | −0.5 (4) | C3C—C4C—C5C—N1C | −0.2 (4) |
F2A—C6A—C7A—O2A | 85.4 (3) | F3C—C6C—C7C—O1C | −154.3 (2) |
F3A—C6A—C7A—O2A | −34.1 (3) | F1C—C6C—C7C—O1C | −32.5 (3) |
F1A—C6A—C7A—O2A | −155.3 (2) | F2C—C6C—C7C—O1C | 86.7 (3) |
F2A—C6A—C7A—O1A | −92.0 (3) | F3C—C6C—C7C—O2C | 28.9 (3) |
F3A—C6A—C7A—O1A | 148.5 (2) | F1C—C6C—C7C—O2C | 150.7 (2) |
F1A—C6A—C7A—O1A | 27.4 (3) | F2C—C6C—C7C—O2C | −90.2 (3) |
C5B—N1B—C1B—C2B | −1.3 (4) | C5D—N1D—C1D—C2D | 0.5 (4) |
N1B—C1B—C2B—C3B | 0.5 (5) | N1D—C1D—C2D—C3D | −0.7 (4) |
C1B—C2B—C3B—C4B | 0.7 (5) | C1D—C2D—C3D—C4D | 0.3 (5) |
C2B—C3B—C4B—C5B | −1.3 (5) | C2D—C3D—C4D—C5D | 0.2 (4) |
C1B—N1B—C5B—N2B | −179.4 (3) | C1D—N1D—C5D—N2D | 178.9 (3) |
C1B—N1B—C5B—C4B | 0.7 (4) | C1D—N1D—C5D—C4D | 0.0 (4) |
C3B—C4B—C5B—N2B | −179.3 (3) | C3D—C4D—C5D—N2D | −179.1 (3) |
C3B—C4B—C5B—N1B | 0.5 (4) | C3D—C4D—C5D—N1D | −0.4 (4) |
F1B—C6B—C7B—O1B | 31.0 (3) | F1D—C6D—C7D—O1D | 37.8 (4) |
F3B—C6B—C7B—O1B | 152.5 (2) | F2D—C6D—C7D—O1D | −81.4 (3) |
F2B—C6B—C7B—O1B | −88.5 (3) | F3D—C6D—C7D—O1D | 159.6 (3) |
F1B—C6B—C7B—O2B | −151.5 (2) | F1D—C6D—C7D—O2D | −144.0 (3) |
F3B—C6B—C7B—O2B | −30.0 (3) | F2D—C6D—C7D—O2D | 96.8 (3) |
F2B—C6B—C7B—O2B | 89.0 (3) | F3D—C6D—C7D—O2D | −22.2 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1NA···O2Di | 0.92 (3) | 1.91 (3) | 2.809 (3) | 168 (2) |
N2A—H2NA···O1Di | 1.02 (4) | 1.79 (4) | 2.795 (4) | 169 (4) |
N2A—H3NA···O1Aii | 0.84 (3) | 2.10 (3) | 2.899 (3) | 160 (3) |
N1B—H1NB···O2Ciii | 0.97 (3) | 1.75 (3) | 2.704 (3) | 166 (3) |
N2B—H2NB···O1Ciii | 0.91 (4) | 2.01 (4) | 2.892 (4) | 164 (3) |
N2B—H3NB···O2Biii | 0.86 (3) | 2.07 (3) | 2.858 (3) | 154 (3) |
N1C—H1NC···O1Aiv | 0.86 (3) | 1.94 (3) | 2.789 (3) | 172 (3) |
N2C—H2NC···O2Aiv | 0.90 (3) | 1.93 (3) | 2.827 (4) | 177 (3) |
N2C—H3NC···O2Dv | 0.94 (3) | 2.04 (3) | 2.894 (3) | 150 (3) |
N1D—H1ND···O2Bvi | 0.92 (3) | 1.80 (3) | 2.701 (3) | 164 (2) |
N2D—H2ND···O1Bvi | 0.95 (3) | 1.97 (3) | 2.878 (4) | 160 (2) |
N2D—H3ND···O2Cvii | 0.84 (3) | 2.21 (3) | 2.908 (3) | 141 (3) |
C1A—H1A···O2A | 1.00 (3) | 2.20 (3) | 3.141 (3) | 155 (2) |
C1B—H1B···F3Cviii | 1.06 (3) | 2.43 (3) | 3.288 (4) | 137 (2) |
C1C—H1C···O1Dix | 0.95 (2) | 2.21 (2) | 3.107 (3) | 158 (2) |
C4A—H4A···F1Aii | 1.06 (3) | 2.34 (3) | 3.352 (3) | 159 (2) |
C4B—H4B···O1C | 1.05 (3) | 2.25 (3) | 3.294 (4) | 171 (2) |
C4C—H4C···F3Dv | 0.93 (3) | 2.50 (3) | 3.365 (3) | 155 (3) |
C4D—H4D···O1Bii | 1.08 (2) | 2.18 (2) | 3.204 (4) | 159 (2) |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) x+1, y, z; (iii) −x+1, y−1/2, −z+1/2; (iv) −x+1, −y+1, −z; (v) x, y−1, z; (vi) −x+1, y+1/2, −z+1/2; (vii) −x+2, y+1/2, −z+1/2; (viii) x−1, y, z; (ix) x+1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C5H7N2+·C2F3O2− |
Mr | 208.15 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 11.4641 (15), 10.0221 (13), 29.928 (4) |
β (°) | 92.918 (3) |
V (Å3) | 3434.1 (8) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.16 |
Crystal size (mm) | 0.35 × 0.17 × 0.04 |
Data collection | |
Diffractometer | Bruker APEX DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.947, 0.994 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 28669, 6732, 4154 |
Rint | 0.072 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.141, 1.02 |
No. of reflections | 6732 |
No. of parameters | 617 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.44, −0.44 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1NA···O2Di | 0.92 (3) | 1.91 (3) | 2.809 (3) | 168 (2) |
N2A—H2NA···O1Di | 1.02 (4) | 1.79 (4) | 2.795 (4) | 169 (4) |
N2A—H3NA···O1Aii | 0.84 (3) | 2.10 (3) | 2.899 (3) | 160 (3) |
N1B—H1NB···O2Ciii | 0.97 (3) | 1.75 (3) | 2.704 (3) | 166 (3) |
N2B—H2NB···O1Ciii | 0.91 (4) | 2.01 (4) | 2.892 (4) | 164 (3) |
N2B—H3NB···O2Biii | 0.86 (3) | 2.07 (3) | 2.858 (3) | 154 (3) |
N1C—H1NC···O1Aiv | 0.86 (3) | 1.94 (3) | 2.789 (3) | 172 (3) |
N2C—H2NC···O2Aiv | 0.90 (3) | 1.93 (3) | 2.827 (4) | 177 (3) |
N2C—H3NC···O2Dv | 0.94 (3) | 2.04 (3) | 2.894 (3) | 150 (3) |
N1D—H1ND···O2Bvi | 0.92 (3) | 1.80 (3) | 2.701 (3) | 164 (2) |
N2D—H2ND···O1Bvi | 0.95 (3) | 1.97 (3) | 2.878 (4) | 160 (2) |
N2D—H3ND···O2Cvii | 0.84 (3) | 2.21 (3) | 2.908 (3) | 141 (3) |
C1A—H1A···O2A | 1.00 (3) | 2.20 (3) | 3.141 (3) | 155 (2) |
C1B—H1B···F3Cviii | 1.06 (3) | 2.43 (3) | 3.288 (4) | 137 (2) |
C1C—H1C···O1Dix | 0.95 (2) | 2.21 (2) | 3.107 (3) | 158 (2) |
C4A—H4A···F1Aii | 1.06 (3) | 2.34 (3) | 3.352 (3) | 159 (2) |
C4B—H4B···O1C | 1.05 (3) | 2.25 (3) | 3.294 (4) | 171 (2) |
C4C—H4C···F3Dv | 0.93 (3) | 2.50 (3) | 3.365 (3) | 155 (3) |
C4D—H4D···O1Bii | 1.08 (2) | 2.18 (2) | 3.204 (4) | 159 (2) |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) x+1, y, z; (iii) −x+1, y−1/2, −z+1/2; (iv) −x+1, −y+1, −z; (v) x, y−1, z; (vi) −x+1, y+1/2, −z+1/2; (vii) −x+2, y+1/2, −z+1/2; (viii) x−1, y, z; (ix) x+1, y−1, z. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
MH and HKF thank the Malaysian Government and Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012. MH thanks Universiti Sains Malaysia for a post-doctoral research fellowship.
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Pyridine and its derivatives play an important role in heterocyclic chemistry (Pozharski et al., 1997; Katritzky et al., 1996). They are often involved in hydrogen-bond interactions (Jeffrey & Saenger, 1991; Jeffrey, 1997; Scheiner, 1997). 2-Aminopyridine is used in the manufacture of pharmaceuticals, especially antihistaminic drugs (Windholz, 1976). The crystal structures of 2-aminopyridine (Chao et al., 1975), 2-aminopyridinium salicylate (Gellert & Hsu, 1988), 2-amino-pyridinium dihydrogenphosphate (Demir et al., 2005), bis(2-aminopyridinium) sulfate (Jebas et al., 2006) and 2-aminopyridinium nitrate (Rademeyer, 2007) have been reported in the literature. The crystal structure determination of the title compound was undertaken to study the hydrogen bonding interactions in it.
The asymmetric unit of the title compound consists of four crystallographically independent 2-aminopyridinium cations (A, B, C & D) and four trifluoroacetate anions (A, B, C & D) (Fig. 1). Each 2-aminopyridinium cation is planar, with a maximum deviation of 0.017 (3) Å for atom N2A (molecule A), 0.007 (2) Å for atom C3B (molecule B), 0.007 (2) Å for atom N1C (molecule C) and 0.008 (3) Å for atom C5D (molecule D).
In the crystal structure (Fig. 2), carboxylate groups of A, B, C and D trifluoroacetate anions interact with two N–H groups of D, C, A and B 2-aminopyridinium cations, respectively, via pairs of N—H···O hydrogen bonds generating R22(8) motifs (Bernstein et al., 1995). The ionic pairs are linked into chains along [100] by N—H···O hydrogen bonds involving the remaining N–H groups. The crystal structure is further stabilized by C—H···O and C—H···F hydrogen bonds (Table 1) and π···π interactions involving the N1A/C1A–C5A pyridine rings at (x, y, z) and (1-x, 1-y, -z) with a centoid-to-centroid separation of 3.6007 (17) Å.