organic compounds
3-(2,3,5,6,7,8-Hexahydro-1H-cyclopenta[b]quinolin-9-yl)-1,5-bis(4-methoxyphenyl)biuret
aDivision of Biotechnology and Life Science, Institute of Symbiotic Science and Technology, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
*Correspondence e-mail: sakuraik@cc.tuat.ac.jp
Ipidacrine (2,3,5,6,7,8-hexahydro-1H-cyclopenta[b]quinolin-9-amine) was reacted with 4-methoxyphenyl isocyanate to give the title compound, C28H30N4O4. An intramolecular N—H⋯O hydrogen bond results in an essentially planar [r.m.s. deviation from the mean plane is 0.126 (1) Å] conformation for the biuret unit. The central ring of the quinoline unit is twisted by 78.2 (1)° with respect to the biuret mean plane, whereas the two 4-methoxybenzene rings are twisted out of this plane by 24.3 (1)° and 48.5 (1)°, resulting in an overall propeller-like structure. An intermolecular N—H⋯N hydrogen bond between the biuret NH atom and the quinoline ring nitrogen defines the crystal packing.
Experimental
Crystal data
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Refinement
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Data collection: PROCESS-AUTO (Rigaku, 1998); cell PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536810006057/fj2281sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810006057/fj2281Isup2.hkl
The title compound was prepared by reacting ipidacrine (20.0 mg, 0.11 mmol) and 4-methoxyphenyl isocyanate (23.9 mg, 0.16 mmol) in dichloromethane (0.5 ml) at room temperature for 18 h. The resultant reaction mixture was concentrated in vacuo and was purified by flash δ 7.28 (d, J = 8.96 Hz, 4H), δ (d, J = 8.96 Hz, 4H), δ 3.82 (s, 1H), δ 3.10 (dd, J = 7.54 Hz, 2H), δ 2.94-3.00 (m, 4H), δ 2.71 (m, 2H), δ 2.18 (m, 2H), δ 1.87 (m, 4H). ESI-MS calcd for C28H31N4O4 (M+H+) 487.23, found 487.22.
(2 % MeOH/CH2Cl2) to afford the title compound I (18.1 mg; 33.8 % yield). Crystals suitable for X-ray diffraction were obtained by slow evaporation of the solution of (I) in MeCN. 1H NMR (CDCl3)The value of the
parameter is meaningless because of its large s.u. value (Flack's x = -0.01 (14)). Therefore, the merging of data was performed before the final cycles. The methylene, methyl and phenyl H atoms were positioned using the HFIX 23, HFIX 137 and HFIX 43 instructions, with C—H = 0.99, 0.98 and 0.95 Å, respectively. In addition, the amide H atoms were positioned using the HFIX 43 instructions, with N—H = 0.88 Å. These C- and N-bound H atoms were also refined as a riding model, with Uiso(H) = 1.2Ueq(C or N).Data collection: PROCESS-AUTO (Rigaku, 1998); cell
PROCESS-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C28H30N4O4 | F(000) = 1032 |
Mr = 486.56 | Dx = 1.331 Mg m−3 |
Monoclinic, Cc | Cu Kα radiation, λ = 1.54187 Å |
Hall symbol: C -2yc | Cell parameters from 18332 reflections |
a = 22.4514 (4) Å | θ = 4.0–68.2° |
b = 12.7128 (2) Å | µ = 0.73 mm−1 |
c = 8.83183 (16) Å | T = 193 K |
β = 105.526 (1)° | Block, colorless |
V = 2428.80 (8) Å3 | 0.45 × 0.25 × 0.10 mm |
Z = 4 |
Rigaku R-AXIS RAPID diffractometer | 2235 independent reflections |
Radiation source: rotating anode | 2168 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
Detector resolution: 10.00 pixels mm-1 | θmax = 68.2°, θmin = 4.0° |
ω scans | h = −26→26 |
Absorption correction: numerical (ABSCOR; Higashi, 1999) | k = −15→15 |
Tmin = 0.754, Tmax = 0.929 | l = −10→10 |
19342 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.028 | H-atom parameters constrained |
wR(F2) = 0.072 | w = 1/[σ2(Fo2) + (0.0431P)2 + 0.5591P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max < 0.001 |
2235 reflections | Δρmax = 0.17 e Å−3 |
328 parameters | Δρmin = −0.15 e Å−3 |
2 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00173 (14) |
C28H30N4O4 | V = 2428.80 (8) Å3 |
Mr = 486.56 | Z = 4 |
Monoclinic, Cc | Cu Kα radiation |
a = 22.4514 (4) Å | µ = 0.73 mm−1 |
b = 12.7128 (2) Å | T = 193 K |
c = 8.83183 (16) Å | 0.45 × 0.25 × 0.10 mm |
β = 105.526 (1)° |
Rigaku R-AXIS RAPID diffractometer | 2235 independent reflections |
Absorption correction: numerical (ABSCOR; Higashi, 1999) | 2168 reflections with I > 2σ(I) |
Tmin = 0.754, Tmax = 0.929 | Rint = 0.022 |
19342 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 2 restraints |
wR(F2) = 0.072 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.17 e Å−3 |
2235 reflections | Δρmin = −0.15 e Å−3 |
328 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.06234 (8) | 0.24673 (12) | 1.0794 (2) | 0.0445 (4) | |
O2 | −0.10168 (7) | 0.65103 (12) | 1.1352 (2) | 0.0444 (4) | |
O3 | 0.17237 (8) | 0.40771 (11) | 0.8629 (2) | 0.0430 (4) | |
O4 | 0.38341 (7) | 0.39432 (13) | 0.50693 (18) | 0.0416 (4) | |
N1 | 0.13344 (8) | 0.25410 (12) | 0.9380 (2) | 0.0306 (4) | |
N2 | 0.06980 (9) | 0.39868 (14) | 0.9509 (2) | 0.0395 (4) | |
H2 | 0.0880 | 0.4276 | 0.8845 | 0.047* | |
N3 | 0.18591 (8) | −0.05082 (13) | 1.12185 (19) | 0.0305 (4) | |
N4 | 0.20716 (8) | 0.25153 (13) | 0.7982 (2) | 0.0329 (4) | |
H4 | 0.2030 | 0.1827 | 0.7998 | 0.039* | |
C1 | 0.08617 (9) | 0.30000 (16) | 0.9974 (2) | 0.0321 (4) | |
C2 | 0.15121 (9) | 0.14855 (15) | 0.9958 (2) | 0.0284 (4) | |
C3 | 0.11494 (9) | 0.06101 (15) | 0.9357 (2) | 0.0281 (4) | |
C4 | 0.13470 (9) | −0.03777 (15) | 1.0012 (2) | 0.0292 (4) | |
C5 | 0.21934 (10) | 0.03451 (15) | 1.1761 (2) | 0.0309 (4) | |
C6 | 0.20443 (9) | 0.13524 (16) | 1.1171 (2) | 0.0305 (4) | |
C7 | 0.27760 (11) | 0.03514 (17) | 1.3082 (3) | 0.0383 (5) | |
H7A | 0.3131 | 0.0083 | 1.2731 | 0.046* | |
H7B | 0.2729 | −0.0077 | 1.3979 | 0.046* | |
C8 | 0.28579 (11) | 0.15237 (18) | 1.3523 (3) | 0.0426 (5) | |
H8A | 0.3302 | 0.1715 | 1.3835 | 0.051* | |
H8B | 0.2679 | 0.1683 | 1.4408 | 0.051* | |
C9 | 0.25137 (11) | 0.21355 (17) | 1.2040 (3) | 0.0393 (5) | |
H9A | 0.2311 | 0.2772 | 1.2316 | 0.047* | |
H9B | 0.2798 | 0.2345 | 1.1410 | 0.047* | |
C10 | 0.05380 (10) | 0.07332 (17) | 0.8131 (2) | 0.0340 (5) | |
H10A | 0.0591 | 0.1235 | 0.7320 | 0.041* | |
H10B | 0.0234 | 0.1040 | 0.8635 | 0.041* | |
C11 | 0.02802 (11) | −0.02892 (18) | 0.7335 (3) | 0.0367 (5) | |
H11A | 0.0514 | −0.0494 | 0.6577 | 0.044* | |
H11B | −0.0157 | −0.0186 | 0.6743 | 0.044* | |
C12 | 0.03227 (10) | −0.11677 (17) | 0.8540 (3) | 0.0353 (5) | |
H12A | 0.0093 | −0.0964 | 0.9307 | 0.042* | |
H12B | 0.0135 | −0.1819 | 0.8004 | 0.042* | |
C13 | 0.09972 (10) | −0.13645 (16) | 0.9390 (3) | 0.0343 (5) | |
H13A | 0.1018 | −0.1852 | 1.0277 | 0.041* | |
H13B | 0.1201 | −0.1712 | 0.8658 | 0.041* | |
C14 | 0.02570 (10) | 0.46052 (17) | 0.9997 (3) | 0.0348 (5) | |
C15 | 0.03188 (11) | 0.56866 (18) | 0.9956 (3) | 0.0429 (5) | |
H15 | 0.0651 | 0.5981 | 0.9619 | 0.051* | |
C16 | −0.00968 (11) | 0.63476 (18) | 1.0399 (3) | 0.0432 (5) | |
H16 | −0.0048 | 0.7089 | 1.0370 | 0.052* | |
C17 | −0.05833 (10) | 0.59240 (17) | 1.0885 (3) | 0.0359 (5) | |
C18 | −0.06523 (10) | 0.48428 (18) | 1.0894 (3) | 0.0414 (5) | |
H18 | −0.0990 | 0.4549 | 1.1208 | 0.050* | |
C19 | −0.02389 (11) | 0.41839 (19) | 1.0454 (3) | 0.0429 (5) | |
H19 | −0.0293 | 0.3443 | 1.0464 | 0.051* | |
C20 | −0.08528 (13) | 0.7562 (2) | 1.1797 (4) | 0.0531 (6) | |
H20A | −0.1159 | 0.7867 | 1.2277 | 0.064* | |
H20B | −0.0840 | 0.7972 | 1.0866 | 0.064* | |
H20C | −0.0445 | 0.7575 | 1.2556 | 0.064* | |
C21 | 0.17192 (10) | 0.31169 (16) | 0.8647 (3) | 0.0324 (4) | |
C22 | 0.25105 (9) | 0.29474 (15) | 0.7251 (2) | 0.0308 (4) | |
C23 | 0.31085 (10) | 0.25400 (15) | 0.7664 (2) | 0.0326 (4) | |
H23 | 0.3220 | 0.2016 | 0.8456 | 0.039* | |
C24 | 0.35403 (10) | 0.28971 (17) | 0.6923 (2) | 0.0340 (4) | |
H24 | 0.3948 | 0.2619 | 0.7207 | 0.041* | |
C25 | 0.33780 (10) | 0.36646 (16) | 0.5759 (2) | 0.0326 (4) | |
C26 | 0.27881 (10) | 0.40864 (16) | 0.5364 (2) | 0.0347 (5) | |
H26 | 0.2679 | 0.4622 | 0.4589 | 0.042* | |
C27 | 0.23551 (10) | 0.37212 (17) | 0.6111 (3) | 0.0343 (4) | |
H27 | 0.1949 | 0.4006 | 0.5836 | 0.041* | |
C28 | 0.36885 (12) | 0.4734 (2) | 0.3897 (3) | 0.0483 (6) | |
H28A | 0.4050 | 0.4872 | 0.3506 | 0.058* | |
H28B | 0.3570 | 0.5380 | 0.4346 | 0.058* | |
H28C | 0.3344 | 0.4496 | 0.3027 | 0.058* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0526 (10) | 0.0364 (8) | 0.0552 (10) | 0.0085 (7) | 0.0329 (8) | 0.0106 (7) |
O2 | 0.0345 (8) | 0.0379 (8) | 0.0634 (10) | 0.0020 (6) | 0.0175 (7) | −0.0103 (7) |
O3 | 0.0495 (9) | 0.0270 (7) | 0.0621 (10) | −0.0047 (7) | 0.0315 (8) | −0.0014 (7) |
O4 | 0.0372 (8) | 0.0457 (9) | 0.0458 (9) | −0.0037 (7) | 0.0177 (7) | 0.0070 (7) |
N1 | 0.0318 (8) | 0.0258 (8) | 0.0365 (9) | 0.0002 (7) | 0.0133 (7) | 0.0008 (7) |
N2 | 0.0456 (10) | 0.0323 (9) | 0.0489 (11) | 0.0058 (8) | 0.0267 (9) | 0.0082 (8) |
N3 | 0.0330 (9) | 0.0274 (8) | 0.0326 (9) | 0.0005 (7) | 0.0115 (7) | −0.0006 (7) |
N4 | 0.0376 (10) | 0.0258 (8) | 0.0387 (9) | −0.0028 (7) | 0.0161 (8) | −0.0007 (7) |
C1 | 0.0343 (11) | 0.0299 (10) | 0.0341 (10) | 0.0005 (8) | 0.0126 (9) | −0.0007 (8) |
C2 | 0.0308 (10) | 0.0264 (9) | 0.0313 (10) | 0.0009 (8) | 0.0142 (8) | −0.0012 (7) |
C3 | 0.0287 (10) | 0.0298 (9) | 0.0277 (9) | −0.0012 (8) | 0.0111 (8) | −0.0005 (8) |
C4 | 0.0287 (10) | 0.0320 (10) | 0.0290 (10) | −0.0012 (8) | 0.0116 (8) | −0.0024 (8) |
C5 | 0.0299 (10) | 0.0329 (10) | 0.0321 (10) | 0.0016 (8) | 0.0122 (8) | 0.0004 (8) |
C6 | 0.0313 (10) | 0.0300 (10) | 0.0324 (10) | −0.0028 (8) | 0.0124 (8) | −0.0030 (8) |
C7 | 0.0365 (11) | 0.0382 (11) | 0.0380 (11) | −0.0001 (9) | 0.0059 (10) | −0.0001 (9) |
C8 | 0.0379 (12) | 0.0426 (12) | 0.0432 (13) | −0.0052 (10) | 0.0040 (10) | −0.0052 (10) |
C9 | 0.0388 (12) | 0.0338 (11) | 0.0428 (12) | −0.0059 (9) | 0.0066 (10) | −0.0025 (9) |
C10 | 0.0321 (11) | 0.0364 (11) | 0.0329 (10) | 0.0004 (9) | 0.0075 (9) | 0.0035 (9) |
C11 | 0.0360 (11) | 0.0426 (12) | 0.0316 (11) | −0.0064 (9) | 0.0092 (9) | −0.0026 (9) |
C12 | 0.0366 (11) | 0.0365 (11) | 0.0341 (11) | −0.0075 (9) | 0.0114 (9) | −0.0054 (9) |
C13 | 0.0397 (12) | 0.0285 (10) | 0.0358 (11) | −0.0022 (9) | 0.0118 (9) | −0.0029 (8) |
C14 | 0.0353 (11) | 0.0341 (11) | 0.0366 (11) | 0.0053 (9) | 0.0126 (9) | 0.0033 (9) |
C15 | 0.0441 (13) | 0.0343 (12) | 0.0579 (14) | 0.0029 (10) | 0.0268 (11) | 0.0065 (10) |
C16 | 0.0444 (13) | 0.0303 (11) | 0.0587 (15) | 0.0021 (10) | 0.0205 (11) | 0.0021 (10) |
C17 | 0.0319 (11) | 0.0376 (11) | 0.0374 (11) | 0.0054 (9) | 0.0080 (9) | −0.0022 (9) |
C18 | 0.0352 (12) | 0.0392 (12) | 0.0543 (13) | −0.0015 (9) | 0.0200 (10) | −0.0020 (10) |
C19 | 0.0428 (13) | 0.0322 (11) | 0.0574 (15) | 0.0007 (9) | 0.0198 (11) | 0.0009 (10) |
C20 | 0.0440 (13) | 0.0434 (13) | 0.0753 (18) | −0.0013 (11) | 0.0218 (13) | −0.0171 (12) |
C21 | 0.0328 (10) | 0.0308 (10) | 0.0352 (10) | −0.0028 (8) | 0.0120 (8) | −0.0007 (8) |
C22 | 0.0337 (10) | 0.0285 (10) | 0.0326 (10) | −0.0036 (8) | 0.0131 (8) | −0.0034 (8) |
C23 | 0.0383 (12) | 0.0284 (10) | 0.0313 (10) | 0.0006 (8) | 0.0097 (9) | 0.0027 (8) |
C24 | 0.0293 (10) | 0.0362 (11) | 0.0358 (10) | 0.0022 (9) | 0.0076 (8) | −0.0006 (9) |
C25 | 0.0331 (10) | 0.0331 (10) | 0.0323 (10) | −0.0073 (8) | 0.0103 (8) | −0.0038 (8) |
C26 | 0.0397 (12) | 0.0312 (10) | 0.0338 (11) | 0.0001 (9) | 0.0113 (9) | 0.0045 (8) |
C27 | 0.0311 (10) | 0.0333 (10) | 0.0386 (11) | 0.0008 (8) | 0.0095 (9) | 0.0011 (9) |
C28 | 0.0562 (15) | 0.0430 (13) | 0.0532 (14) | −0.0043 (11) | 0.0275 (12) | 0.0090 (11) |
O1—C1 | 1.215 (3) | C10—H10B | 0.9900 |
O2—C17 | 1.374 (3) | C11—C12 | 1.528 (3) |
O2—C20 | 1.414 (3) | C11—H11A | 0.9900 |
O3—C21 | 1.221 (3) | C11—H11B | 0.9900 |
O4—C25 | 1.371 (3) | C12—C13 | 1.520 (3) |
O4—C28 | 1.417 (3) | C12—H12A | 0.9900 |
N1—C21 | 1.415 (3) | C12—H12B | 0.9900 |
N1—C1 | 1.429 (2) | C13—H13A | 0.9900 |
N1—C2 | 1.453 (2) | C13—H13B | 0.9900 |
N2—C1 | 1.340 (3) | C14—C15 | 1.383 (3) |
N2—C14 | 1.418 (3) | C14—C19 | 1.389 (3) |
N2—H2 | 0.8800 | C15—C16 | 1.388 (3) |
N3—C5 | 1.333 (3) | C15—H15 | 0.9500 |
N3—C4 | 1.352 (3) | C16—C17 | 1.385 (3) |
N4—C21 | 1.343 (3) | C16—H16 | 0.9500 |
N4—C22 | 1.425 (3) | C17—C18 | 1.383 (3) |
N4—H4 | 0.8800 | C18—C19 | 1.381 (3) |
C2—C6 | 1.385 (3) | C18—H18 | 0.9500 |
C2—C3 | 1.397 (3) | C19—H19 | 0.9500 |
C3—C4 | 1.404 (3) | C20—H20A | 0.9800 |
C3—C10 | 1.512 (3) | C20—H20B | 0.9800 |
C4—C13 | 1.504 (3) | C20—H20C | 0.9800 |
C5—C6 | 1.390 (3) | C22—C27 | 1.383 (3) |
C5—C7 | 1.502 (3) | C22—C23 | 1.393 (3) |
C6—C9 | 1.503 (3) | C23—C24 | 1.383 (3) |
C7—C8 | 1.539 (3) | C23—H23 | 0.9500 |
C7—H7A | 0.9900 | C24—C25 | 1.393 (3) |
C7—H7B | 0.9900 | C24—H24 | 0.9500 |
C8—C9 | 1.542 (3) | C25—C26 | 1.384 (3) |
C8—H8A | 0.9900 | C26—C27 | 1.393 (3) |
C8—H8B | 0.9900 | C26—H26 | 0.9500 |
C9—H9A | 0.9900 | C27—H27 | 0.9500 |
C9—H9B | 0.9900 | C28—H28A | 0.9800 |
C10—C11 | 1.517 (3) | C28—H28B | 0.9800 |
C10—H10A | 0.9900 | C28—H28C | 0.9800 |
C17—O2—C20 | 116.32 (17) | C11—C12—H12A | 109.8 |
C25—O4—C28 | 117.02 (17) | C13—C12—H12B | 109.8 |
C21—N1—C1 | 124.17 (16) | C11—C12—H12B | 109.8 |
C21—N1—C2 | 119.67 (16) | H12A—C12—H12B | 108.2 |
C1—N1—C2 | 114.15 (16) | C4—C13—C12 | 113.39 (17) |
C1—N2—C14 | 125.59 (18) | C4—C13—H13A | 108.9 |
C1—N2—H2 | 117.2 | C12—C13—H13A | 108.9 |
C14—N2—H2 | 117.2 | C4—C13—H13B | 108.9 |
C5—N3—C4 | 117.49 (17) | C12—C13—H13B | 108.9 |
C21—N4—C22 | 122.56 (16) | H13A—C13—H13B | 107.7 |
C21—N4—H4 | 118.7 | C15—C14—C19 | 119.0 (2) |
C22—N4—H4 | 118.7 | C15—C14—N2 | 117.37 (19) |
O1—C1—N2 | 125.17 (19) | C19—C14—N2 | 123.6 (2) |
O1—C1—N1 | 118.70 (18) | C14—C15—C16 | 121.0 (2) |
N2—C1—N1 | 116.06 (17) | C14—C15—H15 | 119.5 |
C6—C2—C3 | 119.41 (18) | C16—C15—H15 | 119.5 |
C6—C2—N1 | 118.90 (17) | C17—C16—C15 | 119.8 (2) |
C3—C2—N1 | 121.66 (18) | C17—C16—H16 | 120.1 |
C2—C3—C4 | 117.90 (18) | C15—C16—H16 | 120.1 |
C2—C3—C10 | 120.99 (18) | O2—C17—C18 | 116.60 (19) |
C4—C3—C10 | 120.93 (17) | O2—C17—C16 | 124.26 (19) |
N3—C4—C3 | 122.87 (17) | C18—C17—C16 | 119.1 (2) |
N3—C4—C13 | 115.87 (17) | C19—C18—C17 | 121.1 (2) |
C3—C4—C13 | 121.26 (18) | C19—C18—H18 | 119.5 |
N3—C5—C6 | 123.98 (19) | C17—C18—H18 | 119.5 |
N3—C5—C7 | 124.98 (18) | C18—C19—C14 | 119.9 (2) |
C6—C5—C7 | 111.04 (18) | C18—C19—H19 | 120.0 |
C2—C6—C5 | 118.31 (18) | C14—C19—H19 | 120.0 |
C2—C6—C9 | 131.00 (19) | O2—C20—H20A | 109.5 |
C5—C6—C9 | 110.68 (19) | O2—C20—H20B | 109.5 |
C5—C7—C8 | 102.83 (18) | H20A—C20—H20B | 109.5 |
C5—C7—H7A | 111.2 | O2—C20—H20C | 109.5 |
C8—C7—H7A | 111.2 | H20A—C20—H20C | 109.5 |
C5—C7—H7B | 111.2 | H20B—C20—H20C | 109.5 |
C8—C7—H7B | 111.2 | O3—C21—N4 | 123.77 (19) |
H7A—C7—H7B | 109.1 | O3—C21—N1 | 122.10 (18) |
C7—C8—C9 | 105.95 (18) | N4—C21—N1 | 114.13 (17) |
C7—C8—H8A | 110.5 | C27—C22—C23 | 119.49 (19) |
C9—C8—H8A | 110.5 | C27—C22—N4 | 122.23 (19) |
C7—C8—H8B | 110.5 | C23—C22—N4 | 118.22 (18) |
C9—C8—H8B | 110.5 | C24—C23—C22 | 120.15 (19) |
H8A—C8—H8B | 108.7 | C24—C23—H23 | 119.9 |
C6—C9—C8 | 102.91 (17) | C22—C23—H23 | 119.9 |
C6—C9—H9A | 111.2 | C23—C24—C25 | 120.05 (19) |
C8—C9—H9A | 111.2 | C23—C24—H24 | 120.0 |
C6—C9—H9B | 111.2 | C25—C24—H24 | 120.0 |
C8—C9—H9B | 111.2 | O4—C25—C26 | 124.47 (19) |
H9A—C9—H9B | 109.1 | O4—C25—C24 | 115.45 (18) |
C3—C10—C11 | 113.83 (18) | C26—C25—C24 | 120.08 (19) |
C3—C10—H10A | 108.8 | C25—C26—C27 | 119.57 (19) |
C11—C10—H10A | 108.8 | C25—C26—H26 | 120.2 |
C3—C10—H10B | 108.8 | C27—C26—H26 | 120.2 |
C11—C10—H10B | 108.8 | C22—C27—C26 | 120.6 (2) |
H10A—C10—H10B | 107.7 | C22—C27—H27 | 119.7 |
C10—C11—C12 | 110.99 (18) | C26—C27—H27 | 119.7 |
C10—C11—H11A | 109.4 | O4—C28—H28A | 109.5 |
C12—C11—H11A | 109.4 | O4—C28—H28B | 109.5 |
C10—C11—H11B | 109.4 | H28A—C28—H28B | 109.5 |
C12—C11—H11B | 109.4 | O4—C28—H28C | 109.5 |
H11A—C11—H11B | 108.0 | H28A—C28—H28C | 109.5 |
C13—C12—C11 | 109.42 (18) | H28B—C28—H28C | 109.5 |
C13—C12—H12A | 109.8 | ||
C14—N2—C1—O1 | 5.5 (4) | C10—C11—C12—C13 | −62.0 (2) |
C14—N2—C1—N1 | −177.6 (2) | N3—C4—C13—C12 | 157.07 (17) |
C21—N1—C1—O1 | −168.7 (2) | C3—C4—C13—C12 | −23.4 (3) |
C2—N1—C1—O1 | −5.0 (3) | C11—C12—C13—C4 | 49.9 (2) |
C21—N1—C1—N2 | 14.2 (3) | C1—N2—C14—C15 | 154.1 (2) |
C2—N1—C1—N2 | 177.95 (18) | C1—N2—C14—C19 | −28.2 (4) |
C21—N1—C2—C6 | 64.4 (2) | C19—C14—C15—C16 | 1.6 (4) |
C1—N1—C2—C6 | −100.1 (2) | N2—C14—C15—C16 | 179.4 (2) |
C21—N1—C2—C3 | −117.7 (2) | C14—C15—C16—C17 | −0.3 (4) |
C1—N1—C2—C3 | 77.8 (2) | C20—O2—C17—C18 | 161.6 (2) |
C6—C2—C3—C4 | −0.4 (3) | C20—O2—C17—C16 | −19.2 (3) |
N1—C2—C3—C4 | −178.32 (17) | C15—C16—C17—O2 | 179.7 (2) |
C6—C2—C3—C10 | 174.75 (17) | C15—C16—C17—C18 | −1.0 (3) |
N1—C2—C3—C10 | −3.1 (3) | O2—C17—C18—C19 | −179.6 (2) |
C5—N3—C4—C3 | −1.9 (3) | C16—C17—C18—C19 | 1.1 (4) |
C5—N3—C4—C13 | 177.58 (18) | C17—C18—C19—C14 | 0.2 (4) |
C2—C3—C4—N3 | 1.9 (3) | C15—C14—C19—C18 | −1.5 (4) |
C10—C3—C4—N3 | −173.28 (17) | N2—C14—C19—C18 | −179.2 (2) |
C2—C3—C4—C13 | −177.55 (18) | C22—N4—C21—O3 | 3.1 (3) |
C10—C3—C4—C13 | 7.3 (3) | C22—N4—C21—N1 | −176.96 (18) |
C4—N3—C5—C6 | 0.5 (3) | C1—N1—C21—O3 | 8.8 (3) |
C4—N3—C5—C7 | −179.63 (19) | C2—N1—C21—O3 | −154.1 (2) |
C3—C2—C6—C5 | −0.9 (3) | C1—N1—C21—N4 | −171.12 (18) |
N1—C2—C6—C5 | 177.05 (16) | C2—N1—C21—N4 | 26.0 (3) |
C3—C2—C6—C9 | −179.65 (19) | C21—N4—C22—C27 | −52.2 (3) |
N1—C2—C6—C9 | −1.7 (3) | C21—N4—C22—C23 | 130.4 (2) |
N3—C5—C6—C2 | 0.9 (3) | C27—C22—C23—C24 | −0.9 (3) |
C7—C5—C6—C2 | −179.00 (18) | N4—C22—C23—C24 | 176.55 (18) |
N3—C5—C6—C9 | 179.93 (19) | C22—C23—C24—C25 | −0.1 (3) |
C7—C5—C6—C9 | 0.0 (2) | C28—O4—C25—C26 | 1.4 (3) |
N3—C5—C7—C8 | −164.38 (19) | C28—O4—C25—C24 | −179.1 (2) |
C6—C5—C7—C8 | 15.5 (2) | C23—C24—C25—O4 | −178.30 (18) |
C5—C7—C8—C9 | −24.5 (2) | C23—C24—C25—C26 | 1.3 (3) |
C2—C6—C9—C8 | 163.3 (2) | O4—C25—C26—C27 | 178.06 (19) |
C5—C6—C9—C8 | −15.5 (2) | C24—C25—C26—C27 | −1.5 (3) |
C7—C8—C9—C6 | 24.6 (2) | C23—C22—C27—C26 | 0.7 (3) |
C2—C3—C10—C11 | 166.33 (18) | N4—C22—C27—C26 | −176.64 (18) |
C4—C3—C10—C11 | −18.6 (3) | C25—C26—C27—C22 | 0.5 (3) |
C3—C10—C11—C12 | 45.9 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O3 | 0.88 | 1.97 | 2.623 (3) | 130 |
N4—H4···N3i | 0.88 | 2.26 | 2.961 (2) | 137 |
Symmetry code: (i) x, −y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C28H30N4O4 |
Mr | 486.56 |
Crystal system, space group | Monoclinic, Cc |
Temperature (K) | 193 |
a, b, c (Å) | 22.4514 (4), 12.7128 (2), 8.83183 (16) |
β (°) | 105.526 (1) |
V (Å3) | 2428.80 (8) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.73 |
Crystal size (mm) | 0.45 × 0.25 × 0.10 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Numerical (ABSCOR; Higashi, 1999) |
Tmin, Tmax | 0.754, 0.929 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19342, 2235, 2168 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.072, 1.09 |
No. of reflections | 2235 |
No. of parameters | 328 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.17, −0.15 |
Computer programs: PROCESS-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2004), SIR2004 (Burla et al., 2005), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O3 | 0.88 | 1.97 | 2.623 (3) | 130 |
N4—H4···N3i | 0.88 | 2.26 | 2.961 (2) | 137 |
Symmetry code: (i) x, −y, z−1/2. |
Acknowledgements
This work was funded by the Japan Science and Technology Agency (JST). Ipidacrine was generously provided by Professor Kazuo Nagasawa.
References
Burla, M. C., Caliandro, R., Camalli, M., Carrozzini, B., Cascarano, G. L., De Caro, L., Giacovazzo, C., Polidori, G. & Spagna, R. (2005). J. Appl. Cryst. 38, 381–388. Web of Science CrossRef CAS IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Harrison, W. T. A. (2007). Acta Cryst. E63, o3883. Web of Science CSD CrossRef IUCr Journals Google Scholar
Higashi, T. (1999). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (1998). PROCESS-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku/MSC (2004). CrystalStructure. Rigaku/MSC, The Woodlands, Texas, USA. Google Scholar
Roh, S.-G. & Jeong, J. H. (2000). Acta Cryst. C56, e529–e530. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound (I) (Fig. 1) was obtained as a side product in the synthesis of ipidacrine urea derivatives.
In the biuret moiety of (I), there are two types of C—N bonds, both of which display a partial double bond character. Their bond lengths are between 1.47 Å (for typical C—N bonds) and 1.28 Å (for C═N bonds) (Allen et al. 1987). The terminal C1—N2 and C21—N4 bonds are shorter (1.340 (3) and 1.343 (3) Å) than the internal C1—N1 and C21–N1 bonds (1.429 (2) and 1.415 (3) Å). O3 is involved in the hydrogen bonding with H2, forming a six-membered ring, which is consistent with solid state structures of other biuret compounds (Harrison, 2007; Roh and Jeong, 2000). However, the biuret moiety of (I) is not completely planar as the dihedral angle for O3–C21–N1–C1 is 8.8 (3)°.
Due to the partial double bond character of the terminal biuret C—N bonds, A1,3 strain is incurred between the buiret carbonyl groups and the bulky p-methoxyphenyl rings. These interactions cause the p-methoxyphenyl rings to twist out of plane with respect to the biuret moiety by approximately 24.3 (1)° and 48.5 (1)°. The bulkier quinoline moiety is substituted at N1, which forms a partial double bond with both C1 and C2. It develops A1,3 strain with two groups, one with p-methoxyphenylamino group, the other with one of the biuret carbonyl group. As a consequence, it is twisted close to perpendicular (78.2 (1)°) to the buiret plane. The steric congestion among the three aromatic substituents around the biuret moiety drives (I) to adopt an overall propeller-like structure.
In the present crystal structure for the title compound (I), these two p-methoxyphenyl rings are not geometrically equivalent. However, the 1H NMR spectrum of (I) shows only one set of peaks for the protons of a p-methoxyphenyl group. This observation suggests that the hydrogen bonds for O1···H4 and O3···H2 are in fast exchange in solution and that the rotational barrier around the internal C—N bond of the biuret group is not significant under ambient condition. Since the biuret moiety deviates slightly from a planar conformation, there is helicity along the biuret backbone (N2—C1—N2—C21—N4). The interconversion of the two hydrogen bonding pairs (between O1···H4 and O3···H2) represents the interconversion of two corresponding helical conformations of (I), making the molecule dynamically racemic in solution.