organic compounds
2-Chloro-6,6-dimethyl-5,6-dihydroindazolo[2,3-c]quinazoline
aFundação Oswaldo Cruz, Instituto de Tecnologia em Fármacos, Departamento de Síntese Orgânica, Manguinhos, CEP 21041250 Rio de Janeiro, RJ, Brazil, bUniversidade Federal do Rio de Janeiro, Departamento de Química Orgânica, Instituto de Quıímica, Cidade Universitária, 21949-900 Rio de Janeiro, RJ, Brazil, cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, dCentro de Desenvolvimento Tecnológico em Saúde (CDTS), Fundação Oswaldo Cruz (FIOCRUZ), Casa Amarela, Campus de Manguinhos, Av. Brasil 4365, 21040-900 Rio de Janeiro, RJ, Brazil, and eCHEMSOL, 1 Harcourt Road, Aberdeen AB15 5NY, Scotland
*Correspondence e-mail: edward.tiekink@gmail.com
Two independent but virtually identical molecules comprise the 16H14ClN3. The molecules have a slightly curved shape owing to puckering in the six-membered C4N2 ring; the respective dihedral angles formed between the benzene rings are 12.64 (7) and 11.72 (7)°. In the crystal, layers sustained by a combination of N—H⋯N hydrogen bonding as well as C—H⋯N and C—H⋯π contacts are formed; these stack along [011] and are connected by further C—H⋯π contacts.
of the title compound, CRelated literature
For background to the synthesis and biological activity of the title compound, see: Rousselet et al. (1993); Ferreira et al. (2007). For additional geometric analysis, see Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: COLLECT (Hooft, 1998); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: PLATON (Spek, 2003) and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536810003818/hb5323sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810003818/hb5323Isup2.hkl
Referring to Fig. 1, to a stirred solution of amine, 3, (10.75 mmol) in acetonitrile (43 ml) was bubbled hydrogen chloride gas. A precipitate was formed immediately. The resulting suspension was refluxed for 14 hours until homogeneous. The reaction mixture was evaporated at reduced pressure and the residue partitioned between CH2Cl2 and saturated aq. NaHCO3. The aqueous layer was washed with CH2Cl2, and the combined organic layers were dried over Na2SO4, filtered and concentrated under reduced pressure. To the solid residue, a mixture of amidine 4 and the starting aniline, 3, was added acetone (50 ml) and the mixture stirred for 30 min. and filtered. The filtrate was evaporated under reduced pressure to give 4 in 70% yield. Recrystallization from acetone of the insoluble residue from the filtration gave pale yellow blocks of (I); 5 in Fig. 1, in 15% yield. M. pt. 483-485 K.
The C-bound H atoms were geometrically placed (C–H = 0.95 Å) and refined as riding with Uiso(H) = 1.2Ueq(C). The N-bound H atoms were located from a difference map and refined with Uiso(H) = 1.2Ueq(N).
Data collection: COLLECT (Hooft, 1998); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); data reduction: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: PLATON (Spek, 2003) and publCIF (Westrip, 2010).Fig. 1. Reaction scheme for the synthesis of (I). | |
Fig. 2. The molecular structure of the first independent molecule in (I) showing displacement ellipsoids at the 50% probability level. | |
Fig. 3. The molecular structure of the second independent molecule in (I) showing displacement ellipsoids at the 50% probability level. | |
Fig. 4. A view of the supramolecular array in (I) held together by N–H···N hydrogen bonds (blue dashed bonds), as well as C–H···N (orange dashed lines) and C–H···π (not shown) interactions. Colour code: Cl, cyan; N, blue; C, grey; and H, green. | |
Fig. 5. View of the stacking of layers in (I) in projection down the a axis. Colour code: Cl, cyan; N, blue; C, grey; and H, green. |
C16H14ClN3 | Z = 4 |
Mr = 283.75 | F(000) = 592 |
Triclinic, P1 | Dx = 1.412 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.8636 (2) Å | Cell parameters from 5954 reflections |
b = 10.7971 (2) Å | θ = 2.9–27.5° |
c = 13.2387 (3) Å | µ = 0.28 mm−1 |
α = 93.483 (1)° | T = 120 K |
β = 100.391 (1)° | Block, pale-yellow |
γ = 104.419 (1)° | 0.55 × 0.25 × 0.15 mm |
V = 1334.81 (5) Å3 |
Nonius KappaCCD area-detector diffractometer | 6102 independent reflections |
Radiation source: Enraf Nonius FR591 rotating anode | 5108 reflections with I > 2σ(I) |
10 cm confocal mirrors monochromator | Rint = 0.037 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 2.9° |
ϕ and ω scans | h = −12→12 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −14→14 |
Tmin = 0.885, Tmax = 1.000 | l = −17→17 |
27218 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0459P)2 + 0.5871P] where P = (Fo2 + 2Fc2)/3 |
6102 reflections | (Δ/σ)max = 0.001 |
371 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
C16H14ClN3 | γ = 104.419 (1)° |
Mr = 283.75 | V = 1334.81 (5) Å3 |
Triclinic, P1 | Z = 4 |
a = 9.8636 (2) Å | Mo Kα radiation |
b = 10.7971 (2) Å | µ = 0.28 mm−1 |
c = 13.2387 (3) Å | T = 120 K |
α = 93.483 (1)° | 0.55 × 0.25 × 0.15 mm |
β = 100.391 (1)° |
Nonius KappaCCD area-detector diffractometer | 6102 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | 5108 reflections with I > 2σ(I) |
Tmin = 0.885, Tmax = 1.000 | Rint = 0.037 |
27218 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.094 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.25 e Å−3 |
6102 reflections | Δρmin = −0.37 e Å−3 |
371 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.33159 (4) | −0.34794 (3) | 0.46107 (3) | 0.02533 (10) | |
N1 | 0.47189 (12) | 0.14829 (11) | 0.28749 (9) | 0.0170 (2) | |
H1N | 0.5189 (18) | 0.1492 (16) | 0.2355 (13) | 0.020* | |
N2 | 0.30560 (12) | 0.22108 (10) | 0.36420 (8) | 0.0146 (2) | |
N3 | 0.25126 (12) | 0.31785 (11) | 0.39366 (9) | 0.0166 (2) | |
C1 | 0.37097 (15) | −0.20111 (13) | 0.41036 (10) | 0.0178 (3) | |
C2 | 0.46556 (15) | −0.18303 (13) | 0.34342 (11) | 0.0191 (3) | |
H2 | 0.5094 | −0.2488 | 0.3275 | 0.023* | |
C3 | 0.49562 (14) | −0.06863 (13) | 0.30000 (11) | 0.0180 (3) | |
H3 | 0.5592 | −0.0565 | 0.2532 | 0.022* | |
C4 | 0.43335 (14) | 0.02947 (13) | 0.32429 (10) | 0.0153 (3) | |
C5 | 0.33861 (14) | 0.01066 (13) | 0.39313 (10) | 0.0149 (3) | |
C6 | 0.30674 (14) | −0.10637 (13) | 0.43533 (10) | 0.0166 (3) | |
H6 | 0.2415 | −0.1207 | 0.4808 | 0.020* | |
C7 | 0.37046 (14) | 0.22740 (13) | 0.27162 (10) | 0.0160 (3) | |
C8 | 0.45339 (16) | 0.36485 (14) | 0.26594 (12) | 0.0215 (3) | |
H8A | 0.5234 | 0.3969 | 0.3306 | 0.032* | |
H8B | 0.3871 | 0.4193 | 0.2555 | 0.032* | |
H8C | 0.5032 | 0.3670 | 0.2081 | 0.032* | |
C9 | 0.25205 (16) | 0.17480 (15) | 0.17637 (11) | 0.0231 (3) | |
H9A | 0.2939 | 0.1762 | 0.1146 | 0.035* | |
H9B | 0.1845 | 0.2282 | 0.1703 | 0.035* | |
H9C | 0.2017 | 0.0862 | 0.1831 | 0.035* | |
C10 | 0.28291 (14) | 0.11864 (13) | 0.41894 (10) | 0.0148 (3) | |
C11 | 0.20930 (14) | 0.15069 (13) | 0.49425 (10) | 0.0150 (3) | |
C12 | 0.15553 (15) | 0.09112 (13) | 0.57641 (10) | 0.0177 (3) | |
H12 | 0.1643 | 0.0077 | 0.5897 | 0.021* | |
C13 | 0.09056 (15) | 0.15635 (14) | 0.63631 (11) | 0.0211 (3) | |
H13 | 0.0535 | 0.1171 | 0.6915 | 0.025* | |
C14 | 0.07742 (16) | 0.28172 (14) | 0.61761 (11) | 0.0219 (3) | |
H14 | 0.0322 | 0.3245 | 0.6608 | 0.026* | |
C15 | 0.12848 (15) | 0.34197 (13) | 0.53880 (11) | 0.0194 (3) | |
H15 | 0.1199 | 0.4259 | 0.5271 | 0.023* | |
C16 | 0.19440 (14) | 0.27539 (13) | 0.47525 (10) | 0.0160 (3) | |
Cl2 | 1.01515 (4) | 0.86179 (3) | 0.04959 (3) | 0.02812 (11) | |
N4 | 1.01094 (12) | 0.36108 (11) | 0.20762 (9) | 0.0162 (2) | |
H4N | 1.0824 (18) | 0.3620 (16) | 0.2564 (13) | 0.019* | |
N5 | 0.76776 (12) | 0.28013 (10) | 0.13350 (8) | 0.0147 (2) | |
N6 | 0.64868 (12) | 0.18074 (11) | 0.10529 (9) | 0.0159 (2) | |
C17 | 1.01399 (15) | 0.71382 (13) | 0.09521 (11) | 0.0182 (3) | |
C18 | 1.13622 (15) | 0.69989 (13) | 0.15913 (11) | 0.0186 (3) | |
H18 | 1.2199 | 0.7697 | 0.1762 | 0.022* | |
C19 | 1.13493 (14) | 0.58330 (13) | 0.19782 (10) | 0.0171 (3) | |
H19 | 1.2183 | 0.5733 | 0.2415 | 0.020* | |
C20 | 1.01243 (14) | 0.48057 (13) | 0.17320 (10) | 0.0146 (3) | |
C21 | 0.88979 (14) | 0.49500 (12) | 0.10646 (10) | 0.0143 (3) | |
C22 | 0.89169 (15) | 0.61293 (13) | 0.06827 (10) | 0.0166 (3) | |
H22 | 0.8093 | 0.6239 | 0.0240 | 0.020* | |
C23 | 0.87707 (14) | 0.27850 (13) | 0.22571 (10) | 0.0157 (3) | |
C24 | 0.89323 (16) | 0.14258 (13) | 0.23258 (12) | 0.0209 (3) | |
H24A | 0.9129 | 0.1102 | 0.1675 | 0.031* | |
H24B | 0.8047 | 0.0865 | 0.2453 | 0.031* | |
H24C | 0.9725 | 0.1435 | 0.2894 | 0.031* | |
C25 | 0.83271 (15) | 0.33020 (15) | 0.32098 (11) | 0.0215 (3) | |
H25A | 0.9060 | 0.3329 | 0.3824 | 0.032* | |
H25B | 0.7414 | 0.2738 | 0.3288 | 0.032* | |
H25C | 0.8222 | 0.4172 | 0.3129 | 0.032* | |
C26 | 0.76750 (14) | 0.38327 (12) | 0.08024 (10) | 0.0142 (3) | |
C27 | 0.63765 (14) | 0.34888 (12) | 0.00739 (10) | 0.0146 (3) | |
C28 | 0.57034 (15) | 0.40825 (13) | −0.07201 (10) | 0.0174 (3) | |
H28 | 0.6155 | 0.4920 | −0.0863 | 0.021* | |
C29 | 0.43847 (15) | 0.34197 (14) | −0.12786 (11) | 0.0200 (3) | |
H29 | 0.3911 | 0.3813 | −0.1806 | 0.024* | |
C30 | 0.37114 (15) | 0.21577 (14) | −0.10858 (11) | 0.0201 (3) | |
H30 | 0.2795 | 0.1727 | −0.1486 | 0.024* | |
C31 | 0.43480 (15) | 0.15426 (13) | −0.03367 (10) | 0.0175 (3) | |
H31 | 0.3900 | 0.0690 | −0.0225 | 0.021* | |
C32 | 0.56925 (14) | 0.22232 (13) | 0.02623 (10) | 0.0155 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0402 (2) | 0.01712 (17) | 0.02142 (18) | 0.01136 (15) | 0.00696 (15) | 0.00566 (13) |
N1 | 0.0154 (6) | 0.0180 (6) | 0.0202 (6) | 0.0058 (5) | 0.0075 (5) | 0.0043 (5) |
N2 | 0.0157 (5) | 0.0143 (5) | 0.0144 (5) | 0.0050 (4) | 0.0034 (4) | 0.0015 (4) |
N3 | 0.0191 (6) | 0.0153 (6) | 0.0165 (6) | 0.0068 (5) | 0.0041 (5) | 0.0004 (4) |
C1 | 0.0207 (7) | 0.0149 (6) | 0.0161 (6) | 0.0053 (5) | −0.0011 (5) | 0.0010 (5) |
C2 | 0.0188 (7) | 0.0192 (7) | 0.0193 (7) | 0.0090 (5) | −0.0001 (5) | −0.0019 (5) |
C3 | 0.0149 (6) | 0.0208 (7) | 0.0183 (7) | 0.0049 (5) | 0.0041 (5) | −0.0006 (5) |
C4 | 0.0130 (6) | 0.0163 (6) | 0.0150 (6) | 0.0027 (5) | 0.0007 (5) | 0.0008 (5) |
C5 | 0.0143 (6) | 0.0156 (6) | 0.0146 (6) | 0.0053 (5) | 0.0012 (5) | 0.0005 (5) |
C6 | 0.0172 (6) | 0.0181 (7) | 0.0145 (6) | 0.0050 (5) | 0.0022 (5) | 0.0020 (5) |
C7 | 0.0161 (6) | 0.0191 (7) | 0.0146 (6) | 0.0060 (5) | 0.0049 (5) | 0.0036 (5) |
C8 | 0.0244 (7) | 0.0202 (7) | 0.0233 (7) | 0.0074 (6) | 0.0093 (6) | 0.0092 (6) |
C9 | 0.0197 (7) | 0.0350 (8) | 0.0152 (7) | 0.0100 (6) | 0.0023 (6) | −0.0010 (6) |
C10 | 0.0132 (6) | 0.0155 (6) | 0.0150 (6) | 0.0031 (5) | 0.0016 (5) | 0.0022 (5) |
C11 | 0.0129 (6) | 0.0169 (6) | 0.0144 (6) | 0.0042 (5) | 0.0009 (5) | 0.0006 (5) |
C12 | 0.0176 (7) | 0.0190 (7) | 0.0168 (7) | 0.0052 (5) | 0.0032 (5) | 0.0040 (5) |
C13 | 0.0199 (7) | 0.0276 (8) | 0.0161 (7) | 0.0052 (6) | 0.0055 (5) | 0.0038 (6) |
C14 | 0.0223 (7) | 0.0258 (8) | 0.0189 (7) | 0.0093 (6) | 0.0054 (6) | −0.0033 (6) |
C15 | 0.0229 (7) | 0.0175 (7) | 0.0186 (7) | 0.0085 (6) | 0.0030 (6) | −0.0015 (5) |
C16 | 0.0148 (6) | 0.0170 (7) | 0.0149 (6) | 0.0040 (5) | 0.0002 (5) | 0.0005 (5) |
Cl2 | 0.0325 (2) | 0.01460 (17) | 0.0300 (2) | −0.00067 (14) | −0.00427 (16) | 0.00690 (14) |
N4 | 0.0123 (5) | 0.0167 (6) | 0.0195 (6) | 0.0039 (4) | 0.0018 (5) | 0.0055 (5) |
N5 | 0.0147 (5) | 0.0141 (5) | 0.0146 (5) | 0.0028 (4) | 0.0029 (4) | 0.0019 (4) |
N6 | 0.0158 (5) | 0.0138 (5) | 0.0163 (6) | 0.0007 (4) | 0.0030 (4) | 0.0004 (4) |
C17 | 0.0221 (7) | 0.0139 (6) | 0.0180 (7) | 0.0032 (5) | 0.0044 (5) | 0.0026 (5) |
C18 | 0.0163 (7) | 0.0179 (7) | 0.0190 (7) | 0.0001 (5) | 0.0033 (5) | −0.0002 (5) |
C19 | 0.0146 (6) | 0.0196 (7) | 0.0169 (7) | 0.0049 (5) | 0.0026 (5) | 0.0016 (5) |
C20 | 0.0167 (6) | 0.0157 (6) | 0.0132 (6) | 0.0063 (5) | 0.0049 (5) | 0.0014 (5) |
C21 | 0.0145 (6) | 0.0143 (6) | 0.0137 (6) | 0.0026 (5) | 0.0038 (5) | 0.0007 (5) |
C22 | 0.0174 (7) | 0.0173 (7) | 0.0149 (6) | 0.0045 (5) | 0.0023 (5) | 0.0022 (5) |
C23 | 0.0143 (6) | 0.0167 (6) | 0.0153 (6) | 0.0034 (5) | 0.0017 (5) | 0.0034 (5) |
C24 | 0.0209 (7) | 0.0175 (7) | 0.0244 (7) | 0.0050 (6) | 0.0030 (6) | 0.0080 (6) |
C25 | 0.0176 (7) | 0.0295 (8) | 0.0157 (7) | 0.0046 (6) | 0.0020 (5) | 0.0004 (6) |
C26 | 0.0159 (6) | 0.0143 (6) | 0.0138 (6) | 0.0051 (5) | 0.0049 (5) | 0.0024 (5) |
C27 | 0.0146 (6) | 0.0157 (6) | 0.0141 (6) | 0.0043 (5) | 0.0044 (5) | 0.0010 (5) |
C28 | 0.0193 (7) | 0.0176 (7) | 0.0163 (7) | 0.0060 (5) | 0.0042 (5) | 0.0021 (5) |
C29 | 0.0211 (7) | 0.0247 (7) | 0.0150 (7) | 0.0096 (6) | 0.0014 (5) | 0.0004 (5) |
C30 | 0.0148 (6) | 0.0242 (7) | 0.0182 (7) | 0.0034 (5) | −0.0001 (5) | −0.0046 (6) |
C31 | 0.0179 (7) | 0.0158 (6) | 0.0167 (7) | 0.0012 (5) | 0.0047 (5) | −0.0033 (5) |
C32 | 0.0169 (6) | 0.0160 (6) | 0.0143 (6) | 0.0045 (5) | 0.0052 (5) | 0.0005 (5) |
Cl1—C1 | 1.7411 (14) | Cl2—C17 | 1.7401 (14) |
N1—C4 | 1.3884 (17) | N4—C20 | 1.3917 (17) |
N1—C7 | 1.4649 (17) | N4—C23 | 1.4662 (17) |
N1—H1N | 0.896 (18) | N4—H4N | 0.863 (17) |
N2—C10 | 1.3532 (17) | N5—C26 | 1.3540 (17) |
N2—N3 | 1.3550 (15) | N5—N6 | 1.3551 (15) |
N2—C7 | 1.4791 (17) | N5—C23 | 1.4800 (17) |
N3—C16 | 1.3573 (18) | N6—C32 | 1.3591 (17) |
C1—C6 | 1.3835 (19) | C17—C22 | 1.3828 (19) |
C1—C2 | 1.387 (2) | C17—C18 | 1.389 (2) |
C2—C3 | 1.382 (2) | C18—C19 | 1.3855 (19) |
C2—H2 | 0.9500 | C18—H18 | 0.9500 |
C3—C4 | 1.3987 (19) | C19—C20 | 1.3939 (19) |
C3—H3 | 0.9500 | C19—H19 | 0.9500 |
C4—C5 | 1.4072 (19) | C20—C21 | 1.4118 (18) |
C5—C6 | 1.3995 (19) | C21—C22 | 1.3954 (18) |
C5—C10 | 1.4548 (18) | C21—C26 | 1.4506 (18) |
C6—H6 | 0.9500 | C22—H22 | 0.9500 |
C7—C8 | 1.5194 (19) | C23—C24 | 1.5214 (18) |
C7—C9 | 1.5258 (19) | C23—C25 | 1.5261 (19) |
C8—H8A | 0.9800 | C24—H24A | 0.9800 |
C8—H8B | 0.9800 | C24—H24B | 0.9800 |
C8—H8C | 0.9800 | C24—H24C | 0.9800 |
C9—H9A | 0.9800 | C25—H25A | 0.9800 |
C9—H9B | 0.9800 | C25—H25B | 0.9800 |
C9—H9C | 0.9800 | C25—H25C | 0.9800 |
C10—C11 | 1.4090 (19) | C26—C27 | 1.4080 (18) |
C11—C12 | 1.4147 (19) | C27—C28 | 1.4137 (19) |
C11—C16 | 1.4227 (18) | C27—C32 | 1.4240 (18) |
C12—C13 | 1.370 (2) | C28—C29 | 1.370 (2) |
C12—H12 | 0.9500 | C28—H28 | 0.9500 |
C13—C14 | 1.424 (2) | C29—C30 | 1.420 (2) |
C13—H13 | 0.9500 | C29—H29 | 0.9500 |
C14—C15 | 1.369 (2) | C30—C31 | 1.372 (2) |
C14—H14 | 0.9500 | C30—H30 | 0.9500 |
C15—C16 | 1.4156 (19) | C31—C32 | 1.4114 (19) |
C15—H15 | 0.9500 | C31—H31 | 0.9500 |
C4—N1—C7 | 120.26 (11) | C20—N4—C23 | 119.47 (11) |
C4—N1—H1N | 114.6 (11) | C20—N4—H4N | 114.1 (11) |
C7—N1—H1N | 111.3 (11) | C23—N4—H4N | 111.7 (11) |
C10—N2—N3 | 115.05 (11) | C26—N5—N6 | 114.95 (11) |
C10—N2—C7 | 124.91 (11) | C26—N5—C23 | 124.25 (11) |
N3—N2—C7 | 119.74 (11) | N6—N5—C23 | 120.24 (10) |
N2—N3—C16 | 103.00 (11) | N5—N6—C32 | 103.14 (10) |
C6—C1—C2 | 121.31 (13) | C22—C17—C18 | 121.23 (13) |
C6—C1—Cl1 | 120.29 (11) | C22—C17—Cl2 | 119.69 (11) |
C2—C1—Cl1 | 118.39 (10) | C18—C17—Cl2 | 119.08 (11) |
C3—C2—C1 | 119.49 (13) | C19—C18—C17 | 119.40 (13) |
C3—C2—H2 | 120.3 | C19—C18—H18 | 120.3 |
C1—C2—H2 | 120.3 | C17—C18—H18 | 120.3 |
C2—C3—C4 | 120.61 (13) | C18—C19—C20 | 120.59 (13) |
C2—C3—H3 | 119.7 | C18—C19—H19 | 119.7 |
C4—C3—H3 | 119.7 | C20—C19—H19 | 119.7 |
N1—C4—C3 | 120.82 (12) | N4—C20—C19 | 121.43 (12) |
N1—C4—C5 | 119.55 (12) | N4—C20—C21 | 118.93 (12) |
C3—C4—C5 | 119.45 (12) | C19—C20—C21 | 119.51 (12) |
C6—C5—C4 | 119.58 (12) | C22—C21—C20 | 119.53 (12) |
C6—C5—C10 | 123.71 (12) | C22—C21—C26 | 123.40 (12) |
C4—C5—C10 | 116.68 (12) | C20—C21—C26 | 117.06 (12) |
C1—C6—C5 | 119.54 (13) | C17—C22—C21 | 119.71 (13) |
C1—C6—H6 | 120.2 | C17—C22—H22 | 120.1 |
C5—C6—H6 | 120.2 | C21—C22—H22 | 120.1 |
N1—C7—N2 | 105.41 (10) | N4—C23—N5 | 105.27 (10) |
N1—C7—C8 | 108.36 (11) | N4—C23—C24 | 108.66 (11) |
N2—C7—C8 | 109.95 (11) | N5—C23—C24 | 109.72 (11) |
N1—C7—C9 | 112.12 (11) | N4—C23—C25 | 112.27 (11) |
N2—C7—C9 | 108.61 (11) | N5—C23—C25 | 108.52 (11) |
C8—C7—C9 | 112.17 (12) | C24—C23—C25 | 112.16 (12) |
C7—C8—H8A | 109.5 | C23—C24—H24A | 109.5 |
C7—C8—H8B | 109.5 | C23—C24—H24B | 109.5 |
H8A—C8—H8B | 109.5 | H24A—C24—H24B | 109.5 |
C7—C8—H8C | 109.5 | C23—C24—H24C | 109.5 |
H8A—C8—H8C | 109.5 | H24A—C24—H24C | 109.5 |
H8B—C8—H8C | 109.5 | H24B—C24—H24C | 109.5 |
C7—C9—H9A | 109.5 | C23—C25—H25A | 109.5 |
C7—C9—H9B | 109.5 | C23—C25—H25B | 109.5 |
H9A—C9—H9B | 109.5 | H25A—C25—H25B | 109.5 |
C7—C9—H9C | 109.5 | C23—C25—H25C | 109.5 |
H9A—C9—H9C | 109.5 | H25A—C25—H25C | 109.5 |
H9B—C9—H9C | 109.5 | H25B—C25—H25C | 109.5 |
N2—C10—C11 | 105.47 (11) | N5—C26—C27 | 105.54 (11) |
N2—C10—C5 | 118.79 (12) | N5—C26—C21 | 118.71 (12) |
C11—C10—C5 | 135.69 (13) | C27—C26—C21 | 135.74 (12) |
C10—C11—C12 | 135.86 (13) | C26—C27—C28 | 135.70 (13) |
C10—C11—C16 | 104.30 (12) | C26—C27—C32 | 104.40 (11) |
C12—C11—C16 | 119.84 (12) | C28—C27—C32 | 119.90 (12) |
C13—C12—C11 | 118.54 (13) | C29—C28—C27 | 118.35 (13) |
C13—C12—H12 | 120.7 | C29—C28—H28 | 120.8 |
C11—C12—H12 | 120.7 | C27—C28—H28 | 120.8 |
C12—C13—C14 | 121.35 (13) | C28—C29—C30 | 121.35 (13) |
C12—C13—H13 | 119.3 | C28—C29—H29 | 119.3 |
C14—C13—H13 | 119.3 | C30—C29—H29 | 119.3 |
C15—C14—C13 | 121.50 (13) | C31—C30—C29 | 121.81 (13) |
C15—C14—H14 | 119.3 | C31—C30—H30 | 119.1 |
C13—C14—H14 | 119.3 | C29—C30—H30 | 119.1 |
C14—C15—C16 | 117.97 (13) | C30—C31—C32 | 117.58 (13) |
C14—C15—H15 | 121.0 | C30—C31—H31 | 121.2 |
C16—C15—H15 | 121.0 | C32—C31—H31 | 121.2 |
N3—C16—C15 | 127.06 (13) | N6—C32—C31 | 127.08 (12) |
N3—C16—C11 | 112.13 (12) | N6—C32—C27 | 111.93 (12) |
C15—C16—C11 | 120.80 (13) | C31—C32—C27 | 120.99 (12) |
C10—N2—N3—C16 | 2.18 (14) | C26—N5—N6—C32 | 2.02 (14) |
C7—N2—N3—C16 | 176.26 (11) | C23—N5—N6—C32 | 173.79 (11) |
C6—C1—C2—C3 | −0.5 (2) | C22—C17—C18—C19 | −0.9 (2) |
Cl1—C1—C2—C3 | 178.29 (10) | Cl2—C17—C18—C19 | 178.41 (10) |
C1—C2—C3—C4 | 1.0 (2) | C17—C18—C19—C20 | 0.0 (2) |
C7—N1—C4—C3 | 152.54 (13) | C23—N4—C20—C19 | 150.56 (13) |
C7—N1—C4—C5 | −32.29 (18) | C23—N4—C20—C21 | −33.59 (17) |
C2—C3—C4—N1 | 174.78 (12) | C18—C19—C20—N4 | 177.17 (12) |
C2—C3—C4—C5 | −0.4 (2) | C18—C19—C20—C21 | 1.4 (2) |
N1—C4—C5—C6 | −175.99 (12) | N4—C20—C21—C22 | −177.61 (12) |
C3—C4—C5—C6 | −0.75 (19) | C19—C20—C21—C22 | −1.68 (19) |
N1—C4—C5—C10 | 1.91 (18) | N4—C20—C21—C26 | 1.62 (18) |
C3—C4—C5—C10 | 177.16 (12) | C19—C20—C21—C26 | 177.55 (12) |
C2—C1—C6—C5 | −0.6 (2) | C18—C17—C22—C21 | 0.6 (2) |
Cl1—C1—C6—C5 | −179.41 (10) | Cl2—C17—C22—C21 | −178.75 (10) |
C4—C5—C6—C1 | 1.3 (2) | C20—C21—C22—C17 | 0.7 (2) |
C10—C5—C6—C1 | −176.50 (12) | C26—C21—C22—C17 | −178.46 (13) |
C4—N1—C7—N2 | 44.02 (15) | C20—N4—C23—N5 | 46.66 (15) |
C4—N1—C7—C8 | 161.69 (12) | C20—N4—C23—C24 | 164.13 (12) |
C4—N1—C7—C9 | −73.97 (16) | C20—N4—C23—C25 | −71.22 (15) |
C10—N2—C7—N1 | −31.81 (16) | C26—N5—C23—N4 | −34.21 (16) |
N3—N2—C7—N1 | 154.73 (11) | N6—N5—C23—N4 | 154.83 (11) |
C10—N2—C7—C8 | −148.40 (13) | C26—N5—C23—C24 | −150.96 (12) |
N3—N2—C7—C8 | 38.14 (16) | N6—N5—C23—C24 | 38.07 (16) |
C10—N2—C7—C9 | 88.52 (15) | C26—N5—C23—C25 | 86.17 (15) |
N3—N2—C7—C9 | −84.94 (14) | N6—N5—C23—C25 | −84.79 (14) |
N3—N2—C10—C11 | −1.57 (15) | N6—N5—C26—C27 | −1.68 (15) |
C7—N2—C10—C11 | −175.31 (11) | C23—N5—C26—C27 | −173.07 (11) |
N3—N2—C10—C5 | −179.50 (11) | N6—N5—C26—C21 | 179.01 (11) |
C7—N2—C10—C5 | 6.77 (19) | C23—N5—C26—C21 | 7.62 (19) |
C6—C5—C10—N2 | −171.72 (12) | C22—C21—C26—N5 | −169.74 (12) |
C4—C5—C10—N2 | 10.47 (18) | C20—C21—C26—N5 | 11.07 (18) |
C6—C5—C10—C11 | 11.1 (2) | C22—C21—C26—C27 | 11.2 (2) |
C4—C5—C10—C11 | −166.67 (14) | C20—C21—C26—C27 | −167.98 (14) |
N2—C10—C11—C12 | −178.65 (15) | N5—C26—C27—C28 | −178.92 (15) |
C5—C10—C11—C12 | −1.3 (3) | C21—C26—C27—C28 | 0.2 (3) |
N2—C10—C11—C16 | 0.26 (14) | N5—C26—C27—C32 | 0.58 (14) |
C5—C10—C11—C16 | 177.66 (14) | C21—C26—C27—C32 | 179.71 (14) |
C10—C11—C12—C13 | 178.45 (15) | C26—C27—C28—C29 | −179.44 (14) |
C16—C11—C12—C13 | −0.33 (19) | C32—C27—C28—C29 | 1.13 (19) |
C11—C12—C13—C14 | −0.4 (2) | C27—C28—C29—C30 | −1.2 (2) |
C12—C13—C14—C15 | 0.3 (2) | C28—C29—C30—C31 | −0.2 (2) |
C13—C14—C15—C16 | 0.5 (2) | C29—C30—C31—C32 | 1.6 (2) |
N2—N3—C16—C15 | 177.09 (13) | N5—N6—C32—C31 | 178.35 (13) |
N2—N3—C16—C11 | −1.92 (14) | N5—N6—C32—C27 | −1.56 (14) |
C14—C15—C16—N3 | 179.89 (13) | C30—C31—C32—N6 | 178.42 (13) |
C14—C15—C16—C11 | −1.2 (2) | C30—C31—C32—C27 | −1.69 (19) |
C10—C11—C16—N3 | 1.08 (15) | C26—C27—C32—N6 | 0.64 (15) |
C12—C11—C16—N3 | −179.79 (12) | C28—C27—C32—N6 | −179.77 (12) |
C10—C11—C16—C15 | −178.01 (12) | C26—C27—C32—C31 | −179.27 (12) |
C12—C11—C16—C15 | 1.12 (19) | C28—C27—C32—C31 | 0.32 (19) |
Cg1, Cg2, Cg3 and Cg4 are the centroids of the N2,N3,C10,C11,C16, N5,N6,C26,C27,C32, C1–C6 and C17–C22 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···N6 | 0.90 (2) | 2.32 (2) | 3.2090 (17) | 173 (2) |
N4—H4n···N3i | 0.86 (2) | 2.39 (2) | 3.2384 (17) | 168 (2) |
C9—H9b···N4ii | 0.98 | 2.58 | 3.537 (2) | 164 |
C25—H25b···N1 | 0.98 | 2.61 | 3.545 (2) | 160 |
C24—H24c···Cg1i | 0.98 | 2.90 | 3.8431 (17) | 162 |
C8—H8c···Cg2 | 0.98 | 2.97 | 3.8929 (17) | 157 |
C18—H18···Cg3iii | 0.95 | 2.92 | 3.6630 (15) | 135 |
C14—H14···Cg4iv | 0.95 | 2.95 | 3.8062 (16) | 151 |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z; (iii) x+1, y+1, z; (iv) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C16H14ClN3 |
Mr | 283.75 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 9.8636 (2), 10.7971 (2), 13.2387 (3) |
α, β, γ (°) | 93.483 (1), 100.391 (1), 104.419 (1) |
V (Å3) | 1334.81 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.55 × 0.25 × 0.15 |
Data collection | |
Diffractometer | Nonius KappaCCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2007) |
Tmin, Tmax | 0.885, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 27218, 6102, 5108 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.094, 1.02 |
No. of reflections | 6102 |
No. of parameters | 371 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.37 |
Computer programs: , DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), PLATON (Spek, 2003) and publCIF (Westrip, 2010).
Cg1, Cg2, Cg3 and Cg4 are the centroids of the N2,N3,C10,C11,C16, N5,N6,C26,C27,C32, C1–C6 and C17–C22 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···N6 | 0.896 (18) | 2.319 (18) | 3.2090 (17) | 172.5 (15) |
N4—H4n···N3i | 0.863 (18) | 2.390 (17) | 3.2384 (17) | 167.5 (15) |
C9—H9b···N4ii | 0.98 | 2.58 | 3.537 (2) | 164 |
C25—H25b···N1 | 0.98 | 2.61 | 3.545 (2) | 160 |
C24—H24c···Cg1i | 0.98 | 2.90 | 3.8431 (17) | 162 |
C8—H8c···Cg2 | 0.98 | 2.97 | 3.8929 (17) | 157 |
C18—H18···Cg3iii | 0.95 | 2.92 | 3.6630 (15) | 135 |
C14—H14···Cg4iv | 0.95 | 2.95 | 3.8062 (16) | 151 |
Symmetry codes: (i) x+1, y, z; (ii) x−1, y, z; (iii) x+1, y+1, z; (iv) −x+1, −y+1, −z+1. |
Footnotes
‡Additional correspondence author, e-mail: j.wardell@abdn.ac.uk.
Acknowledgements
The use of the EPSRC X-ray crystallographic service at the University of Southampton, England, and the valuable assistance of the staff there is gratefully acknowledged. JLW acknowledges support from CAPES (Brazil).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Referring to Fig. 1, amidines, 2 (e.g., X = Y = H; X = H, Y = 4-Cl, 4-Br, 4-F, 4-NO2, 4-CF3, 4-CN, 4-CH3, 4-OMe, 2-Me, 3-OCF3; X, Y = 2,6-F) can be formed from reaction of anilines, 1, with acetonitrile and gaseous hydrogen chloride (Rousselet et al., 1993; Ferreira et al., 2007). From, the N-aryl-amidines, 2, on successively reactions with 2-bromomalonaldehyde and N,N-diethylaminosulfur trifluoride (DAST), can be formed 1-(substituted-phenyl)-5-(difluoromethyl)-2-methyl-1H-imidazoles, potential anti-leishmanial agents (Ferreira et al., 2007). Unexpectedly, the reaction of aniline 3 with acetonitrile and gaseous hydrogen chloride, followed by a workup using Me2CO, not only produced the amidine, 4, but also the title compound, (5 in Fig. 1 but hereafter, I). Compound (I) had been formed by a condensation reaction between the acetone and the starting material 3. The molecular and crystal structures of (I) are now reported.
Two independent but similar molecules, molecule a (Fig. 1) and molecule b (Fig. 2), comprise the crystallographic asymmetric unit in (I). The r.m.s. values for bond distances and angles are 0.0028 Å and 0.325 °, respectively. The six-membered C4N2 ring is puckered as seen in the values of the puckering amplitude Q = 0.3609 (14) Å, θ = 63.3 (2) °, and ϕ = 324.4 (3) ° (Cremer & Pople, 1975); the respective values for the equivalent ring in molecule b are 0.3841 (14) Å, 63.2 (2) °, and 323.6 (2) °. This puckering results in a slightly folded conformation for the molecule, as indicated by the dihedral angle formed between the peripheral benzene rings of 12.64 (7) ° [11.72 (7) ° for molecule b].
Supramolecular arrays are found in the crystal structure of (I) mediated by N–H···N hydrogen bonding and sustained by C–H···N as well as C–H···π contacts, the latter involving hydrogen atoms from the methyl-C8 and -C24 groups and the ring centroids of the five-membered rings, Table 1 and Fig. 3. Layers stack along [0 1 1] as illustrated in Fig. 4, being associated via C–H···π contacts involving aromatic-H atoms and benzene rings.