organic compounds
N′-[1-(4-Aminophenyl)ethyl]pyrazine-2-carbohydrazide
aCollege of Pharmacy, Jiamusi University, Jiamusi 154007, People's Republic of China, bCollege of Science, Northeast Agricultural University, Harbin 150030, People's Republic of China, and cCollege of Computer and Information Engineering, Heilongjiang University of Science and Technology, Harbin 150027, People's Republic of China
*Correspondence e-mail: xzy760203@163.com
The title compound, C13H13N5O, crystallizes with two molecules in the The is stabilized by intramolecular N—H⋯N and N—H⋯O hydrogen bonds. The dihedral angles between the pyrazine ring and the 4-aminolphenyl ring are 2.5 (1) and 6.5 (1)° in the two molecules.
Related literature
For applications of the pyrazine ring system in drug development, see: Du et al. (2009); Dubinina et al. (2006); Ellsworth et al. (2007); Mukaiyama et al. (2007).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku/MSC, 2005); cell CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536810004083/hg2638sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810004083/hg2638Isup2.hkl
For the synthesis of N'-(1-(4-aminophenyl)ethylidene) pyrazine-2-carbohydrazide, (I), a mixture of pyrazine-2-carboxylic acid hydrazide (0.01 mol, 1.38 g) and 1-(4-aminophenyl)ethanone (0.01 mol, 1.35 g) in methanol was refluxed for 2 h. The solid material obtained on cooling was filtered, washed with ethanol: ether =1:1, dried and crystallized from methanol (yield 62%). The compound (1.0 mmol, 0.268 g) was dissolved in 95% ethanol (30 ml) and kept at room temperature for one week, after which yellow platelet shaped single crystals formed and were collected and washed with ether for X-ray diffraction analysis.
All H atoms were initially located in a difference Fourier map. The C—Hatoms were then constrained to an ideal geometry, with C(CH3)—H distances of 0.98 Å, C(phenyl)—H distances of 0.93 Å and Uiso(H) = 1.2Ueq(C). The amino H atoms were refined freely with N—H distances in the range 0.88–0.97 Å.
Data collection: CrystalClear (Rigaku/MSC, 2005); cell
CrystalClear (Rigaku/MSC, 2005); data reduction: CrystalStructure (Rigaku/MSC, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C13H13N5O | Z = 4 |
Mr = 255.28 | F(000) = 536 |
Triclinic, P1 | Dx = 1.410 Mg m−3 |
a = 6.9783 (13) Å | Mo Kα radiation, λ = 0.71070 Å |
b = 10.689 (3) Å | Cell parameters from 2002 reflections |
c = 17.061 (5) Å | θ = 2.5–27.8° |
α = 106.971 (10)° | µ = 0.10 mm−1 |
β = 98.499 (4)° | T = 113 K |
γ = 90.174 (14)° | Platelet, yellow |
V = 1202.3 (5) Å3 | 0.10 × 0.09 × 0.04 mm |
Rigaku Saturn diffractometer | 4150 independent reflections |
Radiation source: rotating anode | 2832 reflections with I > 2σ(I) |
Confocal monochromator | Rint = 0.052 |
Detector resolution: 7.31 pixels mm-1 | θmax = 25.0°, θmin = 2.0° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (REQAB; Jacobson, 1998) | k = −11→12 |
Tmin = 0.991, Tmax = 0.996 | l = −20→20 |
9090 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.069 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0724P)2] where P = (Fo2 + 2Fc2)/3 |
4150 reflections | (Δ/σ)max = 0.001 |
364 parameters | Δρmax = 0.26 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C13H13N5O | γ = 90.174 (14)° |
Mr = 255.28 | V = 1202.3 (5) Å3 |
Triclinic, P1 | Z = 4 |
a = 6.9783 (13) Å | Mo Kα radiation |
b = 10.689 (3) Å | µ = 0.10 mm−1 |
c = 17.061 (5) Å | T = 113 K |
α = 106.971 (10)° | 0.10 × 0.09 × 0.04 mm |
β = 98.499 (4)° |
Rigaku Saturn diffractometer | 4150 independent reflections |
Absorption correction: multi-scan (REQAB; Jacobson, 1998) | 2832 reflections with I > 2σ(I) |
Tmin = 0.991, Tmax = 0.996 | Rint = 0.052 |
9090 measured reflections |
R[F2 > 2σ(F2)] = 0.069 | 0 restraints |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.26 e Å−3 |
4150 reflections | Δρmin = −0.30 e Å−3 |
364 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.8650 (4) | 0.1637 (3) | 0.24329 (16) | 0.0213 (6) | |
C2 | 0.8881 (4) | 0.0891 (3) | 0.16283 (16) | 0.0243 (7) | |
H2 | 0.9195 | −0.0001 | 0.1527 | 0.029* | |
C3 | 0.8657 (4) | 0.1438 (3) | 0.09828 (17) | 0.0220 (6) | |
H3 | 0.8823 | 0.0913 | 0.0445 | 0.026* | |
C4 | 0.8193 (4) | 0.2747 (3) | 0.11007 (16) | 0.0197 (6) | |
C5 | 0.7963 (4) | 0.3486 (3) | 0.19089 (16) | 0.0220 (6) | |
H5 | 0.7631 | 0.4375 | 0.2009 | 0.026* | |
C6 | 0.8207 (4) | 0.2952 (3) | 0.25550 (17) | 0.0239 (7) | |
H6 | 0.8074 | 0.3483 | 0.3096 | 0.029* | |
C7 | 0.7939 (4) | 0.3348 (3) | 0.04141 (16) | 0.0217 (6) | |
C8 | 0.8024 (4) | 0.2514 (3) | −0.04611 (16) | 0.0289 (7) | |
H8A | 0.7298 | 0.2917 | −0.0854 | 0.043* | |
H8B | 0.7451 | 0.1638 | −0.0546 | 0.043* | |
H8C | 0.9379 | 0.2447 | −0.0552 | 0.043* | |
C9 | 0.6961 (4) | 0.6487 (3) | 0.02186 (16) | 0.0217 (6) | |
C10 | 0.6788 (4) | 0.7066 (3) | −0.04848 (16) | 0.0203 (6) | |
C11 | 0.6397 (4) | 0.8372 (3) | −0.03596 (17) | 0.0238 (7) | |
H11 | 0.6214 | 0.8884 | 0.0179 | 0.029* | |
C12 | 0.6529 (4) | 0.8158 (3) | −0.17048 (17) | 0.0268 (7) | |
H12 | 0.6445 | 0.8509 | −0.2159 | 0.032* | |
C13 | 0.6926 (4) | 0.6840 (3) | −0.18385 (17) | 0.0256 (7) | |
H13 | 0.7104 | 0.6328 | −0.2378 | 0.031* | |
C14 | 0.4201 (4) | 0.1709 (3) | 0.68980 (17) | 0.0227 (6) | |
C15 | 0.3869 (4) | 0.0943 (3) | 0.60680 (17) | 0.0256 (7) | |
H15 | 0.3857 | 0.0016 | 0.5936 | 0.031* | |
C16 | 0.3557 (4) | 0.1525 (3) | 0.54366 (17) | 0.0249 (7) | |
H16 | 0.3359 | 0.0986 | 0.4877 | 0.030* | |
C17 | 0.3526 (4) | 0.2884 (3) | 0.56009 (16) | 0.0221 (6) | |
C18 | 0.3846 (4) | 0.3637 (3) | 0.64354 (17) | 0.0246 (7) | |
H18 | 0.3836 | 0.4564 | 0.6569 | 0.029* | |
C19 | 0.4175 (4) | 0.3068 (3) | 0.70710 (17) | 0.0250 (7) | |
H19 | 0.4386 | 0.3606 | 0.7631 | 0.030* | |
C20 | 0.3116 (4) | 0.3502 (3) | 0.49280 (16) | 0.0222 (6) | |
C21 | 0.3380 (4) | 0.2769 (3) | 0.40568 (17) | 0.0299 (7) | |
H21A | 0.2126 | 0.2644 | 0.3692 | 0.045* | |
H21B | 0.3896 | 0.1913 | 0.4046 | 0.045* | |
H21C | 0.4289 | 0.3271 | 0.3865 | 0.045* | |
C22 | 0.1804 (4) | 0.6521 (3) | 0.46356 (17) | 0.0242 (7) | |
C23 | 0.1331 (4) | 0.6910 (3) | 0.38597 (16) | 0.0214 (6) | |
C24 | 0.1030 (4) | 0.8204 (3) | 0.38957 (17) | 0.0261 (7) | |
H24 | 0.1126 | 0.8839 | 0.4424 | 0.031* | |
C25 | 0.0467 (4) | 0.7651 (3) | 0.24967 (17) | 0.0262 (7) | |
H25 | 0.0152 | 0.7878 | 0.1996 | 0.031* | |
C26 | 0.0763 (4) | 0.6349 (3) | 0.24498 (17) | 0.0265 (7) | |
H26 | 0.0644 | 0.5714 | 0.1921 | 0.032* | |
N1 | 0.8761 (4) | 0.1101 (2) | 0.30779 (15) | 0.0294 (6) | |
H1A | 0.933 (5) | 0.036 (3) | 0.3056 (18) | 0.044* | |
H1B | 0.861 (4) | 0.171 (3) | 0.361 (2) | 0.044* | |
N2 | 0.7625 (3) | 0.4591 (2) | 0.06300 (13) | 0.0228 (5) | |
N3 | 0.7388 (3) | 0.5209 (2) | 0.00192 (14) | 0.0224 (6) | |
H3A | 0.742 (4) | 0.482 (3) | −0.0522 (17) | 0.027* | |
N4 | 0.7064 (3) | 0.6282 (2) | −0.12325 (13) | 0.0228 (5) | |
N5 | 0.6263 (3) | 0.8945 (2) | −0.09690 (14) | 0.0264 (6) | |
N6 | 0.4577 (4) | 0.1131 (3) | 0.75362 (16) | 0.0289 (6) | |
H6A | 0.410 (5) | 0.029 (3) | 0.7404 (18) | 0.043* | |
H6B | 0.433 (4) | 0.168 (3) | 0.8058 (19) | 0.043* | |
N7 | 0.2571 (3) | 0.4699 (2) | 0.51400 (14) | 0.0257 (6) | |
N8 | 0.2176 (3) | 0.5256 (2) | 0.44979 (14) | 0.0238 (6) | |
H8 | 0.198 (4) | 0.475 (3) | 0.3982 (17) | 0.029* | |
N9 | 0.1215 (3) | 0.5968 (2) | 0.31366 (14) | 0.0257 (6) | |
N10 | 0.0608 (3) | 0.8597 (2) | 0.32169 (14) | 0.0277 (6) | |
O1 | 0.6759 (3) | 0.71548 (19) | 0.09187 (12) | 0.0328 (5) | |
O2 | 0.1874 (3) | 0.73296 (19) | 0.53239 (11) | 0.0347 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0209 (14) | 0.0198 (15) | 0.0229 (16) | −0.0025 (11) | −0.0002 (11) | 0.0074 (12) |
C2 | 0.0294 (15) | 0.0212 (16) | 0.0211 (16) | 0.0025 (12) | 0.0050 (12) | 0.0038 (12) |
C3 | 0.0214 (14) | 0.0227 (16) | 0.0206 (15) | 0.0012 (12) | 0.0036 (11) | 0.0044 (12) |
C4 | 0.0185 (13) | 0.0181 (15) | 0.0241 (16) | −0.0013 (11) | 0.0033 (11) | 0.0086 (12) |
C5 | 0.0218 (14) | 0.0180 (15) | 0.0263 (16) | 0.0008 (11) | 0.0031 (12) | 0.0069 (12) |
C6 | 0.0284 (15) | 0.0227 (16) | 0.0204 (15) | 0.0025 (12) | 0.0053 (12) | 0.0050 (12) |
C7 | 0.0167 (13) | 0.0245 (16) | 0.0220 (15) | −0.0024 (11) | 0.0026 (11) | 0.0042 (12) |
C8 | 0.0337 (16) | 0.0316 (18) | 0.0224 (16) | 0.0013 (13) | 0.0044 (13) | 0.0092 (13) |
C9 | 0.0239 (14) | 0.0208 (16) | 0.0204 (16) | −0.0003 (12) | 0.0022 (12) | 0.0066 (12) |
C10 | 0.0170 (13) | 0.0212 (15) | 0.0221 (15) | 0.0008 (11) | 0.0043 (11) | 0.0048 (12) |
C11 | 0.0236 (15) | 0.0249 (16) | 0.0221 (16) | −0.0021 (12) | 0.0019 (12) | 0.0064 (13) |
C12 | 0.0265 (15) | 0.0317 (18) | 0.0258 (17) | 0.0006 (13) | 0.0026 (12) | 0.0147 (14) |
C13 | 0.0255 (15) | 0.0332 (18) | 0.0192 (15) | 0.0011 (13) | 0.0047 (12) | 0.0088 (13) |
C14 | 0.0199 (14) | 0.0238 (16) | 0.0262 (16) | 0.0032 (12) | 0.0066 (12) | 0.0087 (13) |
C15 | 0.0293 (16) | 0.0211 (16) | 0.0287 (17) | 0.0026 (12) | 0.0099 (13) | 0.0082 (13) |
C16 | 0.0292 (15) | 0.0238 (16) | 0.0215 (16) | 0.0011 (12) | 0.0067 (12) | 0.0050 (12) |
C17 | 0.0195 (14) | 0.0248 (16) | 0.0219 (15) | 0.0026 (12) | 0.0046 (11) | 0.0063 (12) |
C18 | 0.0248 (15) | 0.0216 (16) | 0.0267 (16) | 0.0031 (12) | 0.0020 (12) | 0.0071 (13) |
C19 | 0.0222 (14) | 0.0301 (17) | 0.0205 (15) | −0.0007 (12) | 0.0022 (12) | 0.0043 (13) |
C20 | 0.0194 (14) | 0.0277 (17) | 0.0197 (15) | −0.0007 (12) | 0.0040 (11) | 0.0069 (13) |
C21 | 0.0376 (17) | 0.0279 (17) | 0.0244 (17) | 0.0056 (13) | 0.0060 (13) | 0.0074 (13) |
C22 | 0.0219 (14) | 0.0234 (16) | 0.0265 (17) | −0.0014 (12) | 0.0035 (12) | 0.0061 (13) |
C23 | 0.0207 (14) | 0.0235 (16) | 0.0198 (15) | −0.0002 (12) | 0.0049 (11) | 0.0053 (12) |
C24 | 0.0303 (16) | 0.0268 (17) | 0.0211 (16) | 0.0037 (13) | 0.0058 (12) | 0.0060 (13) |
C25 | 0.0258 (15) | 0.0317 (18) | 0.0235 (16) | 0.0078 (13) | 0.0043 (12) | 0.0113 (14) |
C26 | 0.0269 (15) | 0.0300 (17) | 0.0203 (16) | 0.0018 (13) | 0.0050 (12) | 0.0036 (13) |
N1 | 0.0450 (16) | 0.0207 (15) | 0.0250 (14) | 0.0080 (12) | 0.0097 (12) | 0.0087 (12) |
N2 | 0.0246 (13) | 0.0237 (14) | 0.0217 (13) | 0.0013 (10) | 0.0013 (10) | 0.0103 (11) |
N3 | 0.0290 (13) | 0.0224 (14) | 0.0166 (13) | 0.0012 (10) | 0.0036 (10) | 0.0073 (11) |
N4 | 0.0238 (12) | 0.0244 (13) | 0.0203 (13) | 0.0017 (10) | 0.0044 (10) | 0.0064 (10) |
N5 | 0.0277 (13) | 0.0249 (14) | 0.0292 (14) | −0.0004 (10) | 0.0057 (10) | 0.0116 (11) |
N6 | 0.0358 (15) | 0.0285 (15) | 0.0267 (15) | 0.0041 (12) | 0.0074 (11) | 0.0135 (12) |
N7 | 0.0305 (13) | 0.0272 (14) | 0.0224 (13) | 0.0024 (11) | 0.0057 (10) | 0.0110 (11) |
N8 | 0.0300 (13) | 0.0231 (14) | 0.0176 (13) | 0.0013 (10) | 0.0028 (10) | 0.0055 (11) |
N9 | 0.0250 (12) | 0.0284 (14) | 0.0227 (13) | 0.0024 (10) | 0.0033 (10) | 0.0062 (11) |
N10 | 0.0305 (13) | 0.0252 (14) | 0.0289 (14) | 0.0031 (11) | 0.0058 (11) | 0.0096 (11) |
O1 | 0.0459 (13) | 0.0313 (12) | 0.0214 (12) | 0.0075 (10) | 0.0080 (9) | 0.0068 (9) |
O2 | 0.0509 (14) | 0.0298 (12) | 0.0199 (12) | 0.0042 (10) | 0.0042 (9) | 0.0027 (9) |
C1—N1 | 1.374 (3) | C15—H15 | 0.9500 |
C1—C6 | 1.402 (4) | C16—C17 | 1.398 (4) |
C1—C2 | 1.405 (3) | C16—H16 | 0.9500 |
C2—C3 | 1.380 (4) | C17—C18 | 1.400 (4) |
C2—H2 | 0.9500 | C17—C20 | 1.477 (4) |
C3—C4 | 1.400 (3) | C18—C19 | 1.383 (4) |
C3—H3 | 0.9500 | C18—H18 | 0.9500 |
C4—C5 | 1.408 (4) | C19—H19 | 0.9500 |
C4—C7 | 1.481 (4) | C20—N7 | 1.298 (3) |
C5—C6 | 1.372 (4) | C20—C21 | 1.503 (4) |
C5—H5 | 0.9500 | C21—H21A | 0.9800 |
C6—H6 | 0.9500 | C21—H21B | 0.9800 |
C7—N2 | 1.300 (3) | C21—H21C | 0.9800 |
C7—C8 | 1.509 (4) | C22—O2 | 1.232 (3) |
C8—H8A | 0.9800 | C22—N8 | 1.336 (3) |
C8—H8B | 0.9800 | C22—C23 | 1.493 (4) |
C8—H8C | 0.9800 | C23—N9 | 1.337 (3) |
C9—O1 | 1.228 (3) | C23—C24 | 1.385 (4) |
C9—N3 | 1.353 (3) | C24—N10 | 1.337 (3) |
C9—C10 | 1.493 (4) | C24—H24 | 0.9500 |
C10—N4 | 1.348 (3) | C25—N10 | 1.334 (3) |
C10—C11 | 1.383 (4) | C25—C26 | 1.388 (4) |
C11—N5 | 1.345 (3) | C25—H25 | 0.9500 |
C11—H11 | 0.9500 | C26—N9 | 1.345 (3) |
C12—N5 | 1.331 (3) | C26—H26 | 0.9500 |
C12—C13 | 1.395 (4) | N1—H1A | 0.88 (3) |
C12—H12 | 0.9500 | N1—H1B | 0.97 (3) |
C13—N4 | 1.329 (3) | N2—N3 | 1.379 (3) |
C13—H13 | 0.9500 | N3—H3A | 0.90 (3) |
C14—N6 | 1.394 (4) | N6—H6A | 0.91 (3) |
C14—C19 | 1.396 (4) | N6—H6B | 0.95 (3) |
C14—C15 | 1.398 (4) | N7—N8 | 1.387 (3) |
C15—C16 | 1.384 (4) | N8—H8 | 0.88 (3) |
N1—C1—C6 | 120.2 (2) | C16—C17—C18 | 117.0 (2) |
N1—C1—C2 | 122.1 (3) | C16—C17—C20 | 121.7 (2) |
C6—C1—C2 | 117.6 (2) | C18—C17—C20 | 121.3 (3) |
C3—C2—C1 | 120.8 (3) | C19—C18—C17 | 121.8 (3) |
C3—C2—H2 | 119.6 | C19—C18—H18 | 119.1 |
C1—C2—H2 | 119.6 | C17—C18—H18 | 119.1 |
C2—C3—C4 | 121.7 (2) | C18—C19—C14 | 120.6 (3) |
C2—C3—H3 | 119.1 | C18—C19—H19 | 119.7 |
C4—C3—H3 | 119.1 | C14—C19—H19 | 119.7 |
C3—C4—C5 | 117.1 (2) | N7—C20—C17 | 116.3 (2) |
C3—C4—C7 | 122.4 (2) | N7—C20—C21 | 123.2 (2) |
C5—C4—C7 | 120.5 (2) | C17—C20—C21 | 120.5 (2) |
C6—C5—C4 | 121.4 (3) | C20—C21—H21A | 109.5 |
C6—C5—H5 | 119.3 | C20—C21—H21B | 109.5 |
C4—C5—H5 | 119.3 | H21A—C21—H21B | 109.5 |
C5—C6—C1 | 121.3 (3) | C20—C21—H21C | 109.5 |
C5—C6—H6 | 119.3 | H21A—C21—H21C | 109.5 |
C1—C6—H6 | 119.3 | H21B—C21—H21C | 109.5 |
N2—C7—C4 | 115.2 (2) | O2—C22—N8 | 125.4 (3) |
N2—C7—C8 | 125.0 (2) | O2—C22—C23 | 121.2 (3) |
C4—C7—C8 | 119.8 (2) | N8—C22—C23 | 113.5 (2) |
C7—C8—H8A | 109.5 | N9—C23—C24 | 121.7 (2) |
C7—C8—H8B | 109.5 | N9—C23—C22 | 117.6 (2) |
H8A—C8—H8B | 109.5 | C24—C23—C22 | 120.7 (2) |
C7—C8—H8C | 109.5 | N10—C24—C23 | 122.7 (3) |
H8A—C8—H8C | 109.5 | N10—C24—H24 | 118.7 |
H8B—C8—H8C | 109.5 | C23—C24—H24 | 118.7 |
O1—C9—N3 | 124.3 (3) | N10—C25—C26 | 122.6 (3) |
O1—C9—C10 | 121.0 (2) | N10—C25—H25 | 118.7 |
N3—C9—C10 | 114.7 (2) | C26—C25—H25 | 118.7 |
N4—C10—C11 | 121.8 (2) | N9—C26—C25 | 121.5 (2) |
N4—C10—C9 | 117.7 (2) | N9—C26—H26 | 119.3 |
C11—C10—C9 | 120.5 (2) | C25—C26—H26 | 119.3 |
N5—C11—C10 | 122.7 (3) | C1—N1—H1A | 121 (2) |
N5—C11—H11 | 118.6 | C1—N1—H1B | 114.9 (18) |
C10—C11—H11 | 118.6 | H1A—N1—H1B | 120 (3) |
N5—C12—C13 | 122.9 (3) | C7—N2—N3 | 117.9 (2) |
N5—C12—H12 | 118.5 | C9—N3—N2 | 119.2 (2) |
C13—C12—H12 | 118.5 | C9—N3—H3A | 115.6 (17) |
N4—C13—C12 | 121.9 (3) | N2—N3—H3A | 125.0 (17) |
N4—C13—H13 | 119.1 | C13—N4—C10 | 115.8 (2) |
C12—C13—H13 | 119.1 | C12—N5—C11 | 114.9 (2) |
N6—C14—C19 | 120.8 (3) | C14—N6—H6A | 114.6 (19) |
N6—C14—C15 | 120.9 (3) | C14—N6—H6B | 113.5 (18) |
C19—C14—C15 | 118.3 (2) | H6A—N6—H6B | 114 (3) |
C16—C15—C14 | 120.6 (3) | C20—N7—N8 | 115.4 (2) |
C16—C15—H15 | 119.7 | C22—N8—N7 | 121.9 (2) |
C14—C15—H15 | 119.7 | C22—N8—H8 | 117.4 (18) |
C15—C16—C17 | 121.7 (3) | N7—N8—H8 | 119.9 (18) |
C15—C16—H16 | 119.1 | C23—N9—C26 | 116.1 (2) |
C17—C16—H16 | 119.1 | C25—N10—C24 | 115.4 (2) |
N1—C1—C2—C3 | 176.4 (2) | C16—C17—C20—N7 | 160.7 (2) |
C6—C1—C2—C3 | −0.7 (4) | C18—C17—C20—N7 | −17.4 (4) |
C1—C2—C3—C4 | −0.1 (4) | C16—C17—C20—C21 | −20.8 (4) |
C2—C3—C4—C5 | 0.1 (4) | C18—C17—C20—C21 | 161.1 (3) |
C2—C3—C4—C7 | −179.7 (2) | O2—C22—C23—N9 | −177.7 (2) |
C3—C4—C5—C6 | 0.8 (4) | N8—C22—C23—N9 | 4.0 (3) |
C7—C4—C5—C6 | −179.4 (2) | O2—C22—C23—C24 | 2.5 (4) |
C4—C5—C6—C1 | −1.6 (4) | N8—C22—C23—C24 | −175.9 (2) |
N1—C1—C6—C5 | −175.7 (2) | N9—C23—C24—N10 | 0.0 (4) |
C2—C1—C6—C5 | 1.5 (4) | C22—C23—C24—N10 | 179.8 (2) |
C3—C4—C7—N2 | −176.1 (2) | N10—C25—C26—N9 | −0.1 (4) |
C5—C4—C7—N2 | 4.2 (3) | C4—C7—N2—N3 | 179.6 (2) |
C3—C4—C7—C8 | 4.9 (4) | C8—C7—N2—N3 | −1.4 (4) |
C5—C4—C7—C8 | −174.9 (2) | O1—C9—N3—N2 | −0.1 (4) |
O1—C9—C10—N4 | 178.8 (2) | C10—C9—N3—N2 | 178.5 (2) |
N3—C9—C10—N4 | 0.1 (3) | C7—N2—N3—C9 | 176.7 (2) |
O1—C9—C10—C11 | 0.0 (4) | C12—C13—N4—C10 | 0.2 (4) |
N3—C9—C10—C11 | −178.6 (2) | C11—C10—N4—C13 | −0.3 (4) |
N4—C10—C11—N5 | 0.0 (4) | C9—C10—N4—C13 | −179.0 (2) |
C9—C10—C11—N5 | 178.7 (2) | C13—C12—N5—C11 | −0.3 (4) |
N5—C12—C13—N4 | 0.1 (4) | C10—C11—N5—C12 | 0.3 (4) |
N6—C14—C15—C16 | −178.0 (2) | C17—C20—N7—N8 | −179.4 (2) |
C19—C14—C15—C16 | 1.1 (4) | C21—C20—N7—N8 | 2.1 (4) |
C14—C15—C16—C17 | −1.2 (4) | O2—C22—N8—N7 | 4.3 (4) |
C15—C16—C17—C18 | 0.7 (4) | C23—C22—N8—N7 | −177.4 (2) |
C15—C16—C17—C20 | −177.5 (2) | C20—N7—N8—C22 | −172.7 (2) |
C16—C17—C18—C19 | −0.1 (4) | C24—C23—N9—C26 | −0.9 (4) |
C20—C17—C18—C19 | 178.1 (2) | C22—C23—N9—C26 | 179.2 (2) |
C17—C18—C19—C14 | 0.1 (4) | C25—C26—N9—C23 | 1.0 (4) |
N6—C14—C19—C18 | 178.5 (2) | C26—C25—N10—C24 | −0.9 (4) |
C15—C14—C19—C18 | −0.6 (4) | C23—C24—N10—C25 | 0.9 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N10i | 0.88 (3) | 2.16 (3) | 3.030 (4) | 170 (3) |
N1—H1B···O2ii | 0.97 (3) | 1.89 (3) | 2.852 (3) | 171 (3) |
N6—H6A···N1iii | 0.91 (3) | 2.38 (3) | 3.162 (4) | 145 (3) |
N6—H6B···O1ii | 0.95 (3) | 2.07 (3) | 3.015 (3) | 169 (3) |
Symmetry codes: (i) x+1, y−1, z; (ii) −x+1, −y+1, −z+1; (iii) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C13H13N5O |
Mr | 255.28 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 113 |
a, b, c (Å) | 6.9783 (13), 10.689 (3), 17.061 (5) |
α, β, γ (°) | 106.971 (10), 98.499 (4), 90.174 (14) |
V (Å3) | 1202.3 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.10 × 0.09 × 0.04 |
Data collection | |
Diffractometer | Rigaku Saturn diffractometer |
Absorption correction | Multi-scan (REQAB; Jacobson, 1998) |
Tmin, Tmax | 0.991, 0.996 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9090, 4150, 2832 |
Rint | 0.052 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.069, 0.164, 1.05 |
No. of reflections | 4150 |
No. of parameters | 364 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.26, −0.30 |
Computer programs: CrystalClear (Rigaku/MSC, 2005), CrystalStructure (Rigaku/MSC, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N10i | 0.88 (3) | 2.16 (3) | 3.030 (4) | 170 (3) |
N1—H1B···O2ii | 0.97 (3) | 1.89 (3) | 2.852 (3) | 171 (3) |
N6—H6A···N1iii | 0.91 (3) | 2.38 (3) | 3.162 (4) | 145 (3) |
N6—H6B···O1ii | 0.95 (3) | 2.07 (3) | 3.015 (3) | 169 (3) |
Symmetry codes: (i) x+1, y−1, z; (ii) −x+1, −y+1, −z+1; (iii) −x+1, −y, −z+1. |
Acknowledgements
The authors would like to thank the Scientific Research Fund of Heilongjiang Provincial Education Department (No. 1153 G043) and the Doctoral Foundation of Northeast Agricultural University (No. 2009RC22). We also thank Professor Hai-bin Song of Nankai University for his contribution to the crystal analysis for this paper.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The pyrazine ring system is a useful structural element in medicinal chemistry and has found broad applications in drug development which can be used as antiproliferative agent (Dubinina et al., 2006), potent CXCR3 antagonists (Du et al., 2009), CB1 antagonists (Ellsworth et al., 2007) and c-Src inhibitory (Mukaiyama et al., 2007). In view of different applications of this class of compounds, we have undertaken a single-crystal structure determination of the title compound. The crystal structure has two independent molecules in the aysmmetric unit, and the dihedral angles between the pyrazine ring and the 4-aminolphenyl ring are 2.5 (1) and 6.5 (1)° in the two molecules (Fig. 1). The crystal structure is stabilized by N—H···O intermolecular hydrogen bonds (between molecules of the 'A' type), each of which are also by N—H···N intermolecular interactions (with molecules of 'B' type) between them (Fig. 2).