organic compounds
Ethyl (2Z)-2-(3-methoxybenzylidene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-1,3-thiazolo[3,2-a]pyrimidine-6-carboxylate
aDepartment of Physics, Bhavan's Sheth R.A. College of Science, Ahmedabad, Gujarat, 380 001, India, bDepartment of Chemistry, M.G. Science Institute, Navrangpura, Navrangpura, Ahmedabad, Gujarat, 380 009, India, and cDepartment of Chemistry, Keene State College, 229 Main Street, Keene, NH 03435-2001, USA
*Correspondence e-mail: jjasinski@keene.edu
In the title compound, C24H22N2O4S, the central pyrimidine ring is significantly puckered, assuming a conformation intermediate between a boat and a screw boat. The nearly planar thiazole ring (r.m.s. deviation = 0.0258 Å) is fused with the pyriamidine ring, making a dihedral angle of 9.83 (7)°. The carboxyl group is in an extended conformation with an anti-periplanar orientation with respect to the dihydropyrimidine ring. The benzene ring linked at the chiral C atom is perpendicular to the pyrimidine ring [dihedral angle = 85.21 (8)°] whereas the phenyl ring is nearly coplanar, making a dihedral angle of 13.20 (8)°. An intramolecular C—H⋯S hydrogen bond is observed. The crystal packing is influenced by weak intermolecular C—H⋯π interactions and π–π stacking between the thiazole and phenyl rings [centroid–centroid distance = 3.9656 (10) Å], which stack the molecules along the c axis.
Related literature
For related structures, see: Jotani & Baldaniya (2008); Sridhar et al. (2006); Fischer et al. (2007); Baldaniya & Jotani (2008); Jotani et al. (2009). For the biological activity of dihydropyrimidines, see: Wichmann et al. (1999); Kappe (2000); Mayer et al. (1999). For a description of the Cambridge Structural Database, see: Allen, (2002). For hydrogen-bond motifs, see: Bernstein et al. (1995). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
10.1107/S1600536810004812/ng2731sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810004812/ng2731Isup2.hkl
A mixture of ethyl 6-methyl-4-phenyl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate (0.01 mol), chloroacetic acid (0.01 mol), fused sodium acetate (6 g m) in glacial acetic acid (25 ml), acetic anhydride (10 ml) and 3-methoxy benzaldehyde (0.01 mol) was refluxed for 3 hours. The reaction mixture was cooled and poured into cold water. The resulting solid was collected and crystallized from methanol to obtain the final product (84 % yield, mp 423 K). The compound was recrystallized by slow evaporation of a benzene-ethanol (8:2) solution, yielding colorless, single crystals suitable for X-ray diffraction.
H atoms were placed in idealized positions (C—H = 0.93— 0.98 Å) and constrained to ride on their parent atoms with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for other H atoms.
Data collection: APEX2 (Bruker, 2004); cell
APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL-97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).C24H22N2O4S | F(000) = 1824 |
Mr = 434.50 | Dx = 1.351 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: -C 2yc | Cell parameters from 5670 reflections |
a = 33.0445 (6) Å | θ = 3.0–30.0° |
b = 9.5013 (2) Å | µ = 0.19 mm−1 |
c = 13.8845 (2) Å | T = 293 K |
β = 101.548 (1)° | Plate, colorless |
V = 4271.01 (13) Å3 | 0.30 × 0.20 × 0.15 mm |
Z = 8 |
Bruker APEXII CCD diffractometer | 6222 independent reflections |
Radiation source: fine-focus sealed tube | 4099 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
ω and ϕ scans | θmax = 30.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −46→46 |
Tmin = 0.946, Tmax = 0.973 | k = −13→13 |
27172 measured reflections | l = −19→19 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.043 | H-atom parameters constrained |
wR(F2) = 0.113 | w = 1/[σ2(Fo2) + (0.049P)2 + 2.3025P] where P = (Fo2 + 2Fc2)/3 |
S = 0.93 | (Δ/σ)max < 0.001 |
6222 reflections | Δρmax = 0.24 e Å−3 |
284 parameters | Δρmin = −0.23 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00104 (16) |
C24H22N2O4S | V = 4271.01 (13) Å3 |
Mr = 434.50 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 33.0445 (6) Å | µ = 0.19 mm−1 |
b = 9.5013 (2) Å | T = 293 K |
c = 13.8845 (2) Å | 0.30 × 0.20 × 0.15 mm |
β = 101.548 (1)° |
Bruker APEXII CCD diffractometer | 6222 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4099 reflections with I > 2σ(I) |
Tmin = 0.946, Tmax = 0.973 | Rint = 0.035 |
27172 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.113 | H-atom parameters constrained |
S = 0.93 | Δρmax = 0.24 e Å−3 |
6222 reflections | Δρmin = −0.23 e Å−3 |
284 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.235672 (11) | 0.12268 (4) | 0.10790 (3) | 0.05063 (12) | |
N1 | 0.18618 (4) | 0.34110 (13) | 0.11604 (10) | 0.0487 (3) | |
N2 | 0.15837 (3) | 0.11297 (12) | 0.11518 (9) | 0.0373 (2) | |
O1 | 0.14512 (3) | −0.11959 (11) | 0.12997 (10) | 0.0571 (3) | |
O2 | 0.04874 (4) | 0.27636 (13) | 0.15987 (10) | 0.0672 (4) | |
O3 | 0.06592 (4) | 0.49424 (12) | 0.12836 (10) | 0.0629 (3) | |
O4 | 0.37128 (4) | −0.07609 (15) | 0.09922 (11) | 0.0733 (4) | |
C1 | 0.18927 (4) | 0.20741 (15) | 0.11242 (11) | 0.0406 (3) | |
C2 | 0.11507 (4) | 0.15838 (14) | 0.10056 (10) | 0.0368 (3) | |
H2 | 0.1018 | 0.1070 | 0.1470 | 0.044* | |
C3 | 0.11429 (4) | 0.31329 (14) | 0.12389 (10) | 0.0381 (3) | |
C4 | 0.14806 (4) | 0.39460 (15) | 0.13134 (11) | 0.0432 (3) | |
C5 | 0.16927 (4) | −0.02682 (15) | 0.12298 (11) | 0.0411 (3) | |
C6 | 0.21375 (4) | −0.04258 (15) | 0.12057 (11) | 0.0416 (3) | |
C7 | 0.15201 (5) | 0.54599 (17) | 0.16009 (15) | 0.0617 (5) | |
H7A | 0.1494 | 0.6032 | 0.1022 | 0.093* | |
H7B | 0.1785 | 0.5619 | 0.2018 | 0.093* | |
H7C | 0.1306 | 0.5704 | 0.1948 | 0.093* | |
C8 | 0.07349 (5) | 0.35749 (15) | 0.14060 (11) | 0.0426 (3) | |
C9 | 0.02824 (6) | 0.5474 (2) | 0.15207 (18) | 0.0759 (6) | |
H9A | 0.0321 | 0.5645 | 0.2222 | 0.091* | |
H9B | 0.0063 | 0.4787 | 0.1340 | 0.091* | |
C10 | 0.01708 (7) | 0.6780 (2) | 0.09834 (18) | 0.0874 (7) | |
H10A | 0.0398 | 0.7426 | 0.1124 | 0.131* | |
H10B | −0.0066 | 0.7186 | 0.1182 | 0.131* | |
H10C | 0.0106 | 0.6587 | 0.0291 | 0.131* | |
C11 | 0.09283 (4) | 0.12247 (14) | −0.00271 (11) | 0.0394 (3) | |
C12 | 0.10440 (5) | 0.18604 (18) | −0.08289 (12) | 0.0504 (4) | |
H12 | 0.1246 | 0.2555 | −0.0730 | 0.060* | |
C13 | 0.08613 (5) | 0.1470 (2) | −0.17714 (13) | 0.0638 (5) | |
H13 | 0.0945 | 0.1883 | −0.2306 | 0.077* | |
C14 | 0.05548 (6) | 0.0471 (2) | −0.19211 (15) | 0.0670 (5) | |
H14 | 0.0431 | 0.0210 | −0.2558 | 0.080* | |
C15 | 0.04305 (5) | −0.0141 (2) | −0.11405 (16) | 0.0651 (5) | |
H15 | 0.0221 | −0.0809 | −0.1246 | 0.078* | |
C16 | 0.06171 (5) | 0.02327 (16) | −0.01906 (13) | 0.0509 (4) | |
H16 | 0.0532 | −0.0188 | 0.0340 | 0.061* | |
C17 | 0.23076 (4) | −0.16995 (17) | 0.12650 (11) | 0.0459 (3) | |
H17 | 0.2127 | −0.2427 | 0.1335 | 0.055* | |
C18 | 0.27255 (4) | −0.21580 (16) | 0.12404 (11) | 0.0452 (3) | |
C19 | 0.30375 (5) | −0.12586 (17) | 0.11084 (12) | 0.0506 (4) | |
H19 | 0.2983 | −0.0302 | 0.1020 | 0.061* | |
C20 | 0.34317 (5) | −0.1759 (2) | 0.11051 (12) | 0.0533 (4) | |
C21 | 0.35128 (5) | −0.3184 (2) | 0.12200 (12) | 0.0588 (4) | |
H21 | 0.3776 | −0.3529 | 0.1219 | 0.071* | |
C22 | 0.32012 (5) | −0.4086 (2) | 0.13349 (13) | 0.0597 (4) | |
H22 | 0.3255 | −0.5045 | 0.1406 | 0.072* | |
C23 | 0.28096 (5) | −0.35955 (17) | 0.13471 (12) | 0.0520 (4) | |
H23 | 0.2602 | −0.4220 | 0.1426 | 0.062* | |
C24 | 0.41086 (5) | −0.1219 (3) | 0.08662 (16) | 0.0806 (6) | |
H24A | 0.4245 | −0.1705 | 0.1447 | 0.121* | |
H24B | 0.4270 | −0.0419 | 0.0755 | 0.121* | |
H24C | 0.4077 | −0.1843 | 0.0312 | 0.121* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.03193 (18) | 0.0440 (2) | 0.0776 (3) | 0.00373 (15) | 0.01474 (17) | 0.00509 (18) |
N1 | 0.0357 (6) | 0.0366 (7) | 0.0741 (9) | −0.0006 (5) | 0.0117 (6) | 0.0037 (6) |
N2 | 0.0287 (5) | 0.0328 (6) | 0.0502 (7) | 0.0034 (4) | 0.0072 (4) | 0.0033 (5) |
O1 | 0.0435 (6) | 0.0346 (6) | 0.0973 (9) | 0.0032 (5) | 0.0237 (6) | 0.0075 (5) |
O2 | 0.0542 (7) | 0.0474 (7) | 0.1104 (10) | 0.0035 (6) | 0.0416 (7) | 0.0055 (6) |
O3 | 0.0529 (7) | 0.0417 (6) | 0.1035 (10) | 0.0146 (5) | 0.0386 (6) | 0.0074 (6) |
O4 | 0.0429 (6) | 0.0804 (9) | 0.1015 (10) | 0.0056 (6) | 0.0259 (6) | 0.0009 (8) |
C1 | 0.0314 (6) | 0.0387 (8) | 0.0508 (8) | 0.0015 (6) | 0.0063 (6) | 0.0034 (6) |
C2 | 0.0287 (6) | 0.0331 (7) | 0.0503 (8) | 0.0036 (5) | 0.0120 (5) | 0.0034 (6) |
C3 | 0.0365 (7) | 0.0325 (7) | 0.0464 (8) | 0.0055 (5) | 0.0109 (6) | 0.0019 (6) |
C4 | 0.0397 (7) | 0.0324 (7) | 0.0571 (9) | 0.0033 (6) | 0.0087 (6) | 0.0029 (6) |
C5 | 0.0360 (7) | 0.0346 (7) | 0.0533 (8) | 0.0060 (6) | 0.0104 (6) | 0.0037 (6) |
C6 | 0.0337 (7) | 0.0416 (8) | 0.0501 (8) | 0.0059 (6) | 0.0093 (6) | 0.0036 (6) |
C7 | 0.0529 (10) | 0.0340 (8) | 0.0951 (14) | −0.0007 (7) | 0.0073 (9) | −0.0062 (8) |
C8 | 0.0427 (7) | 0.0383 (8) | 0.0497 (8) | 0.0064 (6) | 0.0168 (6) | 0.0002 (6) |
C9 | 0.0631 (11) | 0.0580 (12) | 0.1196 (17) | 0.0211 (9) | 0.0493 (12) | 0.0010 (11) |
C10 | 0.0741 (14) | 0.0789 (15) | 0.1087 (17) | 0.0371 (12) | 0.0170 (12) | −0.0026 (13) |
C11 | 0.0289 (6) | 0.0341 (7) | 0.0551 (8) | 0.0075 (5) | 0.0081 (6) | −0.0022 (6) |
C12 | 0.0399 (8) | 0.0559 (10) | 0.0548 (9) | 0.0037 (7) | 0.0080 (7) | −0.0002 (7) |
C13 | 0.0489 (9) | 0.0858 (14) | 0.0555 (10) | 0.0150 (9) | 0.0071 (8) | −0.0010 (9) |
C14 | 0.0511 (10) | 0.0773 (13) | 0.0652 (12) | 0.0198 (9) | −0.0063 (8) | −0.0185 (10) |
C15 | 0.0399 (8) | 0.0525 (10) | 0.0941 (15) | 0.0035 (8) | −0.0075 (9) | −0.0161 (10) |
C16 | 0.0366 (7) | 0.0409 (8) | 0.0733 (11) | 0.0023 (6) | 0.0062 (7) | −0.0022 (7) |
C17 | 0.0378 (7) | 0.0429 (8) | 0.0576 (9) | 0.0083 (6) | 0.0111 (6) | 0.0028 (7) |
C18 | 0.0397 (7) | 0.0486 (9) | 0.0469 (8) | 0.0140 (6) | 0.0078 (6) | 0.0005 (6) |
C19 | 0.0414 (8) | 0.0504 (9) | 0.0605 (10) | 0.0125 (7) | 0.0116 (7) | 0.0005 (7) |
C20 | 0.0401 (8) | 0.0688 (11) | 0.0517 (9) | 0.0100 (8) | 0.0109 (7) | −0.0019 (8) |
C21 | 0.0454 (9) | 0.0744 (12) | 0.0569 (10) | 0.0266 (9) | 0.0105 (7) | −0.0012 (8) |
C22 | 0.0580 (10) | 0.0561 (10) | 0.0651 (11) | 0.0262 (8) | 0.0124 (8) | 0.0025 (8) |
C23 | 0.0487 (9) | 0.0512 (9) | 0.0568 (9) | 0.0146 (7) | 0.0122 (7) | 0.0012 (7) |
C24 | 0.0394 (9) | 0.1200 (19) | 0.0849 (14) | 0.0135 (11) | 0.0187 (9) | 0.0131 (12) |
S1—C1 | 1.7439 (14) | C10—H10B | 0.9600 |
S1—C6 | 1.7528 (15) | C10—H10C | 0.9600 |
N1—C1 | 1.2761 (19) | C11—C16 | 1.380 (2) |
N1—C4 | 1.4134 (18) | C11—C12 | 1.386 (2) |
N2—C1 | 1.3655 (17) | C12—C13 | 1.378 (2) |
N2—C5 | 1.3747 (17) | C12—H12 | 0.9300 |
N2—C2 | 1.4693 (16) | C13—C14 | 1.374 (3) |
O1—C5 | 1.2059 (17) | C13—H13 | 0.9300 |
O2—C8 | 1.1928 (18) | C14—C15 | 1.364 (3) |
O3—C8 | 1.3277 (17) | C14—H14 | 0.9300 |
O3—C9 | 1.4413 (18) | C15—C16 | 1.386 (2) |
O4—C20 | 1.358 (2) | C15—H15 | 0.9300 |
O4—C24 | 1.422 (2) | C16—H16 | 0.9300 |
C2—C3 | 1.5084 (19) | C17—C18 | 1.4551 (19) |
C2—C11 | 1.513 (2) | C17—H17 | 0.9300 |
C2—H2 | 0.9800 | C18—C19 | 1.379 (2) |
C3—C4 | 1.3441 (19) | C18—C23 | 1.396 (2) |
C3—C8 | 1.4740 (19) | C19—C20 | 1.388 (2) |
C4—C7 | 1.491 (2) | C19—H19 | 0.9300 |
C5—C6 | 1.4842 (19) | C20—C21 | 1.383 (3) |
C6—C17 | 1.330 (2) | C21—C22 | 1.373 (3) |
C7—H7A | 0.9600 | C21—H21 | 0.9300 |
C7—H7B | 0.9600 | C22—C23 | 1.379 (2) |
C7—H7C | 0.9600 | C22—H22 | 0.9300 |
C9—C10 | 1.457 (3) | C23—H23 | 0.9300 |
C9—H9A | 0.9700 | C24—H24A | 0.9600 |
C9—H9B | 0.9700 | C24—H24B | 0.9600 |
C10—H10A | 0.9600 | C24—H24C | 0.9600 |
C1—S1—C6 | 91.48 (7) | H10A—C10—H10C | 109.5 |
C1—N1—C4 | 116.41 (12) | H10B—C10—H10C | 109.5 |
C1—N2—C5 | 116.84 (11) | C16—C11—C12 | 118.81 (14) |
C1—N2—C2 | 121.08 (11) | C16—C11—C2 | 120.96 (13) |
C5—N2—C2 | 121.81 (11) | C12—C11—C2 | 120.20 (13) |
C8—O3—C9 | 117.58 (13) | C13—C12—C11 | 120.45 (16) |
C20—O4—C24 | 117.87 (16) | C13—C12—H12 | 119.8 |
N1—C1—N2 | 125.93 (13) | C11—C12—H12 | 119.8 |
N1—C1—S1 | 122.60 (11) | C14—C13—C12 | 119.96 (18) |
N2—C1—S1 | 111.43 (10) | C14—C13—H13 | 120.0 |
N2—C2—C3 | 108.35 (11) | C12—C13—H13 | 120.0 |
N2—C2—C11 | 109.85 (10) | C15—C14—C13 | 120.32 (17) |
C3—C2—C11 | 113.42 (11) | C15—C14—H14 | 119.8 |
N2—C2—H2 | 108.4 | C13—C14—H14 | 119.8 |
C3—C2—H2 | 108.4 | C14—C15—C16 | 119.98 (17) |
C11—C2—H2 | 108.4 | C14—C15—H15 | 120.0 |
C4—C3—C8 | 126.55 (13) | C16—C15—H15 | 120.0 |
C4—C3—C2 | 121.85 (12) | C11—C16—C15 | 120.45 (16) |
C8—C3—C2 | 111.55 (12) | C11—C16—H16 | 119.8 |
C3—C4—N1 | 122.20 (13) | C15—C16—H16 | 119.8 |
C3—C4—C7 | 127.00 (14) | C6—C17—C18 | 131.48 (15) |
N1—C4—C7 | 110.74 (13) | C6—C17—H17 | 114.3 |
O1—C5—N2 | 123.05 (12) | C18—C17—H17 | 114.3 |
O1—C5—C6 | 127.03 (13) | C19—C18—C23 | 118.83 (14) |
N2—C5—C6 | 109.91 (12) | C19—C18—C17 | 123.77 (14) |
C17—C6—C5 | 119.90 (13) | C23—C18—C17 | 117.40 (15) |
C17—C6—S1 | 130.03 (11) | C18—C19—C20 | 121.03 (15) |
C5—C6—S1 | 110.06 (10) | C18—C19—H19 | 119.5 |
C4—C7—H7A | 109.5 | C20—C19—H19 | 119.5 |
C4—C7—H7B | 109.5 | O4—C20—C21 | 125.14 (15) |
H7A—C7—H7B | 109.5 | O4—C20—C19 | 115.18 (16) |
C4—C7—H7C | 109.5 | C21—C20—C19 | 119.68 (16) |
H7A—C7—H7C | 109.5 | C22—C21—C20 | 119.45 (15) |
H7B—C7—H7C | 109.5 | C22—C21—H21 | 120.3 |
O2—C8—O3 | 122.74 (13) | C20—C21—H21 | 120.3 |
O2—C8—C3 | 122.77 (13) | C21—C22—C23 | 121.21 (16) |
O3—C8—C3 | 114.43 (13) | C21—C22—H22 | 119.4 |
O3—C9—C10 | 108.86 (16) | C23—C22—H22 | 119.4 |
O3—C9—H9A | 109.9 | C22—C23—C18 | 119.79 (17) |
C10—C9—H9A | 109.9 | C22—C23—H23 | 120.1 |
O3—C9—H9B | 109.9 | C18—C23—H23 | 120.1 |
C10—C9—H9B | 109.9 | O4—C24—H24A | 109.5 |
H9A—C9—H9B | 108.3 | O4—C24—H24B | 109.5 |
C9—C10—H10A | 109.5 | H24A—C24—H24B | 109.5 |
C9—C10—H10B | 109.5 | O4—C24—H24C | 109.5 |
H10A—C10—H10B | 109.5 | H24A—C24—H24C | 109.5 |
C9—C10—H10C | 109.5 | H24B—C24—H24C | 109.5 |
C4—N1—C1—N2 | 4.8 (2) | C4—C3—C8—O2 | −158.39 (16) |
C4—N1—C1—S1 | −172.62 (11) | C2—C3—C8—O2 | 19.1 (2) |
C5—N2—C1—N1 | −171.96 (14) | C4—C3—C8—O3 | 24.3 (2) |
C2—N2—C1—N1 | 14.0 (2) | C2—C3—C8—O3 | −158.23 (13) |
C5—N2—C1—S1 | 5.71 (16) | C8—O3—C9—C10 | −156.88 (18) |
C2—N2—C1—S1 | −168.38 (10) | N2—C2—C11—C16 | 113.42 (13) |
C6—S1—C1—N1 | 172.96 (14) | C3—C2—C11—C16 | −125.17 (14) |
C6—S1—C1—N2 | −4.80 (11) | N2—C2—C11—C12 | −64.54 (16) |
C1—N2—C2—C3 | −22.21 (17) | C3—C2—C11—C12 | 56.87 (16) |
C5—N2—C2—C3 | 164.00 (12) | C16—C11—C12—C13 | −2.3 (2) |
C1—N2—C2—C11 | 102.20 (14) | C2—C11—C12—C13 | 175.70 (14) |
C5—N2—C2—C11 | −71.60 (16) | C11—C12—C13—C14 | 1.7 (3) |
N2—C2—C3—C4 | 15.01 (18) | C12—C13—C14—C15 | −0.1 (3) |
C11—C2—C3—C4 | −107.23 (15) | C13—C14—C15—C16 | −0.8 (3) |
N2—C2—C3—C8 | −162.59 (11) | C12—C11—C16—C15 | 1.4 (2) |
C11—C2—C3—C8 | 75.16 (15) | C2—C11—C16—C15 | −176.60 (13) |
C8—C3—C4—N1 | 178.44 (14) | C14—C15—C16—C11 | 0.1 (2) |
C2—C3—C4—N1 | 1.2 (2) | C5—C6—C17—C18 | 178.62 (15) |
C8—C3—C4—C7 | 1.4 (3) | S1—C6—C17—C18 | −0.4 (3) |
C2—C3—C4—C7 | −175.82 (15) | C6—C17—C18—C19 | −2.3 (3) |
C1—N1—C4—C3 | −12.3 (2) | C6—C17—C18—C23 | 178.40 (16) |
C1—N1—C4—C7 | 165.13 (14) | C23—C18—C19—C20 | −1.6 (2) |
C1—N2—C5—O1 | 177.02 (14) | C17—C18—C19—C20 | 179.12 (15) |
C2—N2—C5—O1 | −8.9 (2) | C24—O4—C20—C21 | 7.8 (3) |
C1—N2—C5—C6 | −3.43 (18) | C24—O4—C20—C19 | −172.72 (16) |
C2—N2—C5—C6 | 170.62 (12) | C18—C19—C20—O4 | −178.46 (15) |
O1—C5—C6—C17 | 0.0 (2) | C18—C19—C20—C21 | 1.1 (2) |
N2—C5—C6—C17 | −179.57 (13) | O4—C20—C21—C22 | 179.52 (16) |
O1—C5—C6—S1 | 179.16 (14) | C19—C20—C21—C22 | 0.1 (2) |
N2—C5—C6—S1 | −0.38 (15) | C20—C21—C22—C23 | −0.6 (3) |
C1—S1—C6—C17 | −178.02 (15) | C21—C22—C23—C18 | 0.0 (3) |
C1—S1—C6—C5 | 2.89 (11) | C19—C18—C23—C22 | 1.0 (2) |
C9—O3—C8—O2 | 8.2 (3) | C17—C18—C23—C22 | −179.63 (15) |
C9—O3—C8—C3 | −174.50 (16) |
Cg3 is the centroid of the C11–C16 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C19—H19···S1 | 0.93 | 2.54 | 3.2561 (15) | 134 |
C10—H10B···Cg3i | 0.96 | 2.87 | 3.755 (3) | 153 |
C21—H21···Cg3ii | 0.93 | 2.79 | 3.602 (2) | 147 |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1/2, −y−1/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C24H22N2O4S |
Mr | 434.50 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 33.0445 (6), 9.5013 (2), 13.8845 (2) |
β (°) | 101.548 (1) |
V (Å3) | 4271.01 (13) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.19 |
Crystal size (mm) | 0.30 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.946, 0.973 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 27172, 6222, 4099 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.704 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.113, 0.93 |
No. of reflections | 6222 |
No. of parameters | 284 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.23 |
Computer programs: APEX2 (Bruker, 2004), APEX2 and SAINT (Bruker, 2004), SAINT and XPREP (Bruker, 2004), SIR97 (Altomare et al., 1999), SHELXL-97 (Sheldrick, 2008), PLATON (Spek, 2009).
Cg3 is the centroid of the C11–C16 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C19—H19···S1 | 0.93 | 2.54 | 3.2561 (15) | 133.8 |
C10—H10B···Cg3i | 0.96 | 2.87 | 3.755 (3) | 153 |
C21—H21···Cg3ii | 0.93 | 2.79 | 3.602 (2) | 147 |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1/2, −y−1/2, −z. |
Cg1···Cg4iii | 3.9656 (10) |
Symmetry codes: (iii) 1/2-x,1/2+y,1/2-z; Cg1 and Cg4 are the centroids of the S1/C1/N2/C5/C6 amd C18—C23 rings. |
Acknowledgements
The authors thank the Department of Science and Technology (DST) and SAIF, IIT Madras, Chennai, India for the data collection. MMJ thanks the University Grant Commission (Western Regional Office), India, for their support of Mionor Research Project F. No. 47–254-07.
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Series of fused thiazolo [3,2-a] pyrimidine derivatives are antagonistic to group 2 mGlu receptors depending upon substitution of two phenyl rings at the 2 and 5 positions as well as substituents at positions 6 and 7 of the scaffold (Wichmann et al., 1999). Moreover dihydropyrimidines (DHPMs) have remarkable potency with antiviral, antitumor, antibacterial and anti-inflammatory activities, and are used as antihypertensive agents and calcium channel modulators (Kappe, 2000). A DHPM analog has been identified as a potential anticancer lead that is involved in blocking mitosis by inhibition of a kinesin motor protein (Mayer et al., 1999). In continuation of our studies on a series of pharmacologically interesting thiazolo [3,2-a] pyrimidine derivatives (Jotani & Baldaniya, 2008; Baldaniya & Jotani, 2008; Jotani et al., 2009) to examine the effect of substituents of varying size from the phenyl ring on crystal packing, a crystal structure of the title compound, C24H22N2O4S, (I), is reported.
In (I), the central pyrimidine ring with a chiral C2 atom at the point of substitution of a benzene ring (C11-C16) is significantly puckered and adopts a conformation which is best described as an intermediate between a boat and screw boat form, Fig. 1. The ring puckering parameters (Cremer & Pople, 1975) for the pyrimidine ring are q2 = 0.1997 (14) Å, q3 = 0.0575 (17)Å, Q = 0.2090 (15) Å; θ = 74.1 (4) ° and ϕ = 157.9 (4)°. Idealized values for a boat and screw boat conformation are: θ = 90° and 67.5°, and ϕ = 60k and (60k + 30)°, respectively, where k is an integer. The fusion of a nearly planar thiazole ring (r.m.s. deviation = 0.0258Å) results in slightly deviated N1—C1 and N1—C4 bond lengths in the pyrimidine ring. The fused thiazole ring has geometrical parameters similar to analagous structures (Jotani & Baldaniya, 2008; Baldaniya & Jotani, 2008; Jotani et al., 2009; Sridhar et al., 2006; Fischer et al., 2007). The dihedral angles between the mean planes of the benzene (C11-C16) and 3-methoxy phenyl ring (C18-C23) substituted at the carbon C6 atom and the pyrimidine ring are 85.21 (8)° and 13.20 (8)° respectively. The dihedral angle between the mean planes of the benzene (C11-C16) and 3-methoxy phenyl rings (C18-C23) is 87.73°. The carboxyl group linked at C3 atom is in an extended conformation with an anti-periplanar orientation with respect to pyrimidine ring. The ethyl group remains nearly planar (C8/O3/C9/C10 = -156.87 (19)° resulting a trans conformation of ethoxy group with respect to O2—C9 bond. A short intramolecular C—H···S hydrogen bond between the phenyl carbon C19 and thiazolo sulphur S1 (Fig. 2 & Table 1) forms a pseudo-six-membered ring of S(6) graph-set motif (Bernstein et al., 1995) which helps to consolidate the crystal packing. C-H···Cg π interactions exist between a carboxylate carbon atom and benzene (Cg3) [C10···H10···Cg3], and between a phenyl carbon atom and benzene (Cg3) [C21—H21···Cg3], (Table 2). In addition a weak π–π intermolecular interaction is observed between the ring centroids of the thiazole (Cg1) and phenyl (Cg4) rings (Fig. 3, Table 3).