organic compounds
Methyl 2,3-di-O-acetyl-4-O-levulinoyl-1-O-(2,2,2-trichloro-2-iminoethyl)-L-idopyranosiduronate
aResearch Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, People's Republic of China
*Correspondence e-mail: wgh@rcees.ac.cn
In the title compound, C18H22Cl3NO11, a novel derivative of L-idopyranosiduronic acid, the six-membered ring adopts a chair conformation.
Related literature
For background to L-iduronic acids, see: Capila & Linhardt (2002); Jobron & Jacquinet (1998); Lee et al. (2004). For the synthesis of iduronic acid derivatives, see: Yu et al. (2004); Sanjoy et al. (2001); Lubineau et al. (2000); Lohman et al. (2003).
Experimental
Crystal data
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Data collection: RAPID-AUTO (Rigaku, 2001); cell RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536810010895/bt5207sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810010895/bt5207Isup2.hkl
The title compound was prepared in 76.8% yield by treatment with trichloroaceonitrile and DBU at 0 °C. The reaction was stirred for 30 min then allowed to warm to room temperature. Solvent was evaporated and the residue purified by Flash silica gel
(silica quenched with 1% NEt3) afford the title compound as syrupy.H atoms were positioned geometrically and allowed to ride on their parent atoms, with C—H = 0.95—1.00 Å and Uiso(H) = 1.2—1.5Ueq(C).
Data collection: RAPID-AUTO (Rigaku, 2001); cell
RAPID-AUTO (Rigaku, 2001); data reduction: RAPID-AUTO (Rigaku, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, displacement ellipsoids are at the 50% level. | |
Fig. 2. A packing diagram of the title compound. |
C18H22Cl3NO11 | Dx = 1.514 Mg m−3 |
Mr = 534.72 | Cu Kα radiation, λ = 1.54186 Å |
Orthorhombic, P212121 | Cell parameters from 1098 reflections |
a = 9.0498 (10) Å | θ = 2.2–27.5° |
b = 9.7560 (11) Å | µ = 4.07 mm−1 |
c = 26.570 (3) Å | T = 173 K |
V = 2345.8 (4) Å3 | Block, colorless |
Z = 4 | 0.41 × 0.30 × 0.28 mm |
F(000) = 1104 |
Rigaku R-AXIS RAPID IP area-detector diffractometer | 4259 independent reflections |
Radiation source: rotating anode | 3893 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.047 |
ω scans at fixed χ = 45° | θmax = 68.2°, θmin = 3.3° |
Absorption correction: numerical (ABSCOR; Higashi, 1995) | h = −10→10 |
Tmin = 0.286, Tmax = 0.395 | k = −11→11 |
16340 measured reflections | l = −32→31 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H-atom parameters constrained |
wR(F2) = 0.100 | w = 1/[σ2(Fo2) + (0.0268P)2 + 1.8534P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max < 0.001 |
4259 reflections | Δρmax = 0.45 e Å−3 |
302 parameters | Δρmin = −0.48 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 1804 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.023 (18) |
C18H22Cl3NO11 | V = 2345.8 (4) Å3 |
Mr = 534.72 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 9.0498 (10) Å | µ = 4.07 mm−1 |
b = 9.7560 (11) Å | T = 173 K |
c = 26.570 (3) Å | 0.41 × 0.30 × 0.28 mm |
Rigaku R-AXIS RAPID IP area-detector diffractometer | 4259 independent reflections |
Absorption correction: numerical (ABSCOR; Higashi, 1995) | 3893 reflections with I > 2σ(I) |
Tmin = 0.286, Tmax = 0.395 | Rint = 0.047 |
16340 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | H-atom parameters constrained |
wR(F2) = 0.100 | Δρmax = 0.45 e Å−3 |
S = 1.09 | Δρmin = −0.48 e Å−3 |
4259 reflections | Absolute structure: Flack (1983), 1804 Friedel pairs |
302 parameters | Absolute structure parameter: 0.023 (18) |
0 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.43622 (11) | 0.42769 (10) | −0.00915 (3) | 0.0470 (2) | |
Cl2 | 0.44529 (14) | 0.72085 (10) | −0.00601 (4) | 0.0578 (3) | |
Cl3 | 0.62102 (10) | 0.56765 (16) | 0.06361 (4) | 0.0664 (3) | |
O1 | 0.2587 (2) | 0.4459 (2) | 0.17647 (7) | 0.0275 (5) | |
O2 | 0.3250 (2) | 0.4443 (2) | 0.09152 (8) | 0.0329 (5) | |
O3 | 0.0181 (2) | 0.2548 (2) | 0.14357 (8) | 0.0332 (5) | |
O4 | −0.0977 (3) | 0.3313 (3) | 0.07477 (9) | 0.0527 (7) | |
O5 | 0.3933 (2) | 0.1578 (2) | 0.10987 (8) | 0.0320 (5) | |
O6 | 0.2917 (3) | −0.0176 (3) | 0.06774 (10) | 0.0488 (7) | |
O7 | 0.1922 (2) | 0.1967 (2) | 0.22751 (8) | 0.0285 (5) | |
O8 | 0.2316 (3) | −0.0295 (2) | 0.23558 (11) | 0.0493 (7) | |
O9 | 0.1750 (4) | 0.1508 (4) | 0.35252 (12) | 0.0780 (11) | |
O10 | 0.3492 (3) | 0.4899 (3) | 0.27135 (9) | 0.0462 (7) | |
O11 | 0.4850 (3) | 0.2966 (3) | 0.26989 (8) | 0.0402 (6) | |
N1 | 0.2424 (3) | 0.6658 (3) | 0.08223 (11) | 0.0411 (7) | |
H1A | 0.2761 | 0.7351 | 0.0630 | 0.049* | |
C1 | 0.2099 (3) | 0.4196 (4) | 0.12743 (10) | 0.0284 (7) | |
H1C | 0.1257 | 0.4827 | 0.1198 | 0.034* | |
C2 | 0.1588 (3) | 0.2725 (3) | 0.11851 (12) | 0.0280 (7) | |
H2A | 0.1470 | 0.2558 | 0.0816 | 0.034* | |
C3 | 0.2619 (3) | 0.1663 (3) | 0.14075 (11) | 0.0269 (7) | |
H3A | 0.2117 | 0.0751 | 0.1419 | 0.032* | |
C4 | 0.3162 (4) | 0.2048 (3) | 0.19295 (11) | 0.0260 (7) | |
H4A | 0.3971 | 0.1416 | 0.2038 | 0.031* | |
C5 | 0.3679 (4) | 0.3526 (3) | 0.19531 (11) | 0.0271 (7) | |
H5A | 0.4609 | 0.3628 | 0.1754 | 0.033* | |
C6 | 0.3286 (4) | 0.5705 (4) | 0.06991 (11) | 0.0315 (7) | |
C7 | 0.4526 (4) | 0.5722 (4) | 0.03110 (11) | 0.0352 (7) | |
C8 | −0.1037 (4) | 0.2905 (4) | 0.11727 (13) | 0.0366 (8) | |
C9 | −0.2403 (4) | 0.2721 (4) | 0.14798 (15) | 0.0458 (10) | |
H9A | −0.3271 | 0.2931 | 0.1273 | 0.069* | |
H9B | −0.2373 | 0.3341 | 0.1770 | 0.069* | |
H9C | −0.2461 | 0.1771 | 0.1598 | 0.069* | |
C10 | 0.3914 (4) | 0.0610 (4) | 0.07321 (11) | 0.0343 (7) | |
C11 | 0.5308 (4) | 0.0652 (4) | 0.04323 (13) | 0.0471 (9) | |
H11A | 0.5075 | 0.0543 | 0.0074 | 0.071* | |
H11B | 0.5962 | −0.0092 | 0.0540 | 0.071* | |
H11C | 0.5802 | 0.1535 | 0.0485 | 0.071* | |
C12 | 0.1578 (4) | 0.0694 (4) | 0.24437 (11) | 0.0323 (7) | |
C13 | 0.0114 (4) | 0.0687 (4) | 0.27120 (12) | 0.0350 (7) | |
H13A | 0.0108 | −0.0084 | 0.2954 | 0.042* | |
H13B | −0.0674 | 0.0511 | 0.2462 | 0.042* | |
C14 | −0.0258 (4) | 0.1992 (4) | 0.29934 (12) | 0.0349 (8) | |
H14A | −0.0291 | 0.2762 | 0.2751 | 0.042* | |
H14B | −0.1254 | 0.1898 | 0.3143 | 0.042* | |
C15 | 0.0820 (4) | 0.2329 (4) | 0.34006 (13) | 0.0434 (9) | |
C16 | 0.0726 (6) | 0.3724 (4) | 0.36322 (14) | 0.0572 (12) | |
H16A | 0.1519 | 0.3832 | 0.3881 | 0.086* | |
H16B | −0.0233 | 0.3832 | 0.3799 | 0.086* | |
H16C | 0.0832 | 0.4422 | 0.3369 | 0.086* | |
C17 | 0.3974 (4) | 0.3918 (3) | 0.24983 (12) | 0.0308 (7) | |
C18 | 0.5206 (4) | 0.3098 (4) | 0.32281 (13) | 0.0481 (10) | |
H18A | 0.5860 | 0.2346 | 0.3329 | 0.072* | |
H18B | 0.4295 | 0.3062 | 0.3427 | 0.072* | |
H18C | 0.5705 | 0.3975 | 0.3286 | 0.072* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0627 (6) | 0.0425 (5) | 0.0358 (4) | −0.0035 (5) | 0.0135 (4) | −0.0068 (4) |
Cl2 | 0.0917 (8) | 0.0412 (5) | 0.0405 (5) | −0.0004 (5) | 0.0219 (5) | 0.0099 (4) |
Cl3 | 0.0339 (5) | 0.1146 (10) | 0.0507 (5) | −0.0158 (6) | −0.0041 (4) | 0.0145 (7) |
O1 | 0.0301 (11) | 0.0272 (12) | 0.0252 (10) | 0.0002 (10) | 0.0028 (9) | −0.0002 (9) |
O2 | 0.0336 (12) | 0.0322 (13) | 0.0330 (11) | 0.0029 (11) | 0.0122 (10) | 0.0045 (10) |
O3 | 0.0228 (12) | 0.0440 (14) | 0.0328 (11) | −0.0007 (11) | 0.0049 (10) | −0.0025 (10) |
O4 | 0.0407 (15) | 0.079 (2) | 0.0381 (15) | 0.0149 (15) | −0.0022 (12) | −0.0001 (14) |
O5 | 0.0287 (12) | 0.0353 (13) | 0.0321 (11) | −0.0007 (10) | 0.0113 (10) | −0.0070 (10) |
O6 | 0.0489 (16) | 0.0484 (16) | 0.0492 (15) | −0.0084 (14) | 0.0079 (13) | −0.0188 (13) |
O7 | 0.0303 (12) | 0.0276 (12) | 0.0276 (11) | −0.0022 (10) | 0.0105 (10) | 0.0035 (9) |
O8 | 0.0546 (17) | 0.0269 (14) | 0.0664 (18) | 0.0040 (13) | 0.0261 (15) | 0.0048 (12) |
O9 | 0.079 (2) | 0.089 (3) | 0.067 (2) | 0.029 (2) | −0.0329 (19) | −0.0091 (19) |
O10 | 0.0583 (17) | 0.0445 (16) | 0.0359 (13) | 0.0033 (14) | −0.0002 (13) | −0.0117 (12) |
O11 | 0.0410 (14) | 0.0437 (14) | 0.0358 (12) | 0.0008 (12) | −0.0087 (11) | 0.0005 (11) |
N1 | 0.052 (2) | 0.0306 (16) | 0.0402 (16) | 0.0008 (16) | 0.0072 (15) | 0.0049 (13) |
C1 | 0.0252 (15) | 0.0342 (17) | 0.0259 (14) | −0.0011 (15) | 0.0053 (12) | 0.0028 (15) |
C2 | 0.0214 (15) | 0.0346 (18) | 0.0281 (16) | −0.0045 (15) | 0.0052 (13) | −0.0032 (14) |
C3 | 0.0249 (16) | 0.0300 (17) | 0.0258 (15) | −0.0021 (14) | 0.0094 (13) | −0.0001 (13) |
C4 | 0.0266 (16) | 0.0278 (17) | 0.0236 (15) | −0.0022 (14) | 0.0063 (13) | −0.0010 (13) |
C5 | 0.0237 (16) | 0.0273 (16) | 0.0304 (16) | −0.0014 (14) | 0.0025 (14) | 0.0014 (13) |
C6 | 0.0374 (17) | 0.0334 (18) | 0.0237 (15) | 0.0014 (17) | −0.0004 (13) | 0.0029 (15) |
C7 | 0.0366 (18) | 0.0417 (19) | 0.0273 (15) | −0.0030 (18) | −0.0002 (14) | 0.0004 (15) |
C8 | 0.0291 (18) | 0.043 (2) | 0.0373 (19) | −0.0020 (17) | 0.0018 (15) | −0.0103 (16) |
C9 | 0.0248 (19) | 0.055 (2) | 0.058 (2) | −0.0024 (18) | 0.0058 (17) | −0.006 (2) |
C10 | 0.0381 (18) | 0.0355 (18) | 0.0295 (16) | 0.0043 (18) | 0.0005 (14) | −0.0050 (15) |
C11 | 0.050 (2) | 0.050 (2) | 0.0415 (19) | 0.002 (2) | 0.0182 (17) | −0.0085 (19) |
C12 | 0.0360 (18) | 0.0289 (17) | 0.0319 (16) | −0.0055 (17) | 0.0062 (14) | 0.0035 (15) |
C13 | 0.0318 (17) | 0.0350 (18) | 0.0383 (17) | −0.0042 (17) | 0.0068 (14) | 0.0049 (16) |
C14 | 0.0305 (18) | 0.0380 (19) | 0.0363 (17) | 0.0014 (16) | 0.0072 (15) | 0.0054 (15) |
C15 | 0.048 (2) | 0.055 (2) | 0.0276 (17) | 0.002 (2) | 0.0040 (17) | 0.0029 (17) |
C16 | 0.075 (3) | 0.058 (3) | 0.039 (2) | −0.008 (2) | 0.007 (2) | −0.0088 (18) |
C17 | 0.0275 (16) | 0.0347 (19) | 0.0301 (16) | −0.0089 (15) | 0.0022 (14) | −0.0008 (14) |
C18 | 0.047 (2) | 0.065 (3) | 0.0320 (18) | −0.011 (2) | −0.0091 (17) | 0.0113 (18) |
Cl1—C7 | 1.776 (4) | C4—C5 | 1.517 (4) |
Cl2—C7 | 1.754 (4) | C4—H4A | 1.0000 |
Cl3—C7 | 1.753 (3) | C5—C17 | 1.522 (4) |
O1—C1 | 1.399 (3) | C5—H5A | 1.0000 |
O1—C5 | 1.433 (4) | C6—C7 | 1.524 (4) |
O2—C6 | 1.359 (4) | C8—C9 | 1.492 (5) |
O2—C1 | 1.433 (3) | C9—H9A | 0.9800 |
O3—C8 | 1.351 (4) | C9—H9B | 0.9800 |
O3—C2 | 1.447 (3) | C9—H9C | 0.9800 |
O4—C8 | 1.199 (4) | C10—C11 | 1.492 (4) |
O5—C10 | 1.357 (4) | C11—H11A | 0.9800 |
O5—C3 | 1.447 (3) | C11—H11B | 0.9800 |
O6—C10 | 1.194 (4) | C11—H11C | 0.9800 |
O7—C12 | 1.356 (4) | C12—C13 | 1.504 (4) |
O7—C4 | 1.452 (3) | C13—C14 | 1.515 (5) |
O8—C12 | 1.197 (4) | C13—H13A | 0.9900 |
O9—C15 | 1.208 (5) | C13—H13B | 0.9900 |
O10—C17 | 1.197 (4) | C14—C15 | 1.493 (5) |
O11—C17 | 1.333 (4) | C14—H14A | 0.9900 |
O11—C18 | 1.448 (4) | C14—H14B | 0.9900 |
N1—C6 | 1.256 (4) | C15—C16 | 1.496 (5) |
N1—H1A | 0.9001 | C16—H16A | 0.9800 |
C1—C2 | 1.527 (4) | C16—H16B | 0.9800 |
C1—H1C | 1.0000 | C16—H16C | 0.9800 |
C2—C3 | 1.514 (4) | C18—H18A | 0.9800 |
C2—H2A | 1.0000 | C18—H18B | 0.9800 |
C3—C4 | 1.518 (4) | C18—H18C | 0.9800 |
C3—H3A | 1.0000 | ||
C1—O1—C5 | 115.3 (2) | C8—C9—H9A | 109.5 |
C6—O2—C1 | 116.8 (2) | C8—C9—H9B | 109.5 |
C8—O3—C2 | 116.7 (2) | H9A—C9—H9B | 109.5 |
C10—O5—C3 | 115.9 (2) | C8—C9—H9C | 109.5 |
C12—O7—C4 | 115.9 (2) | H9A—C9—H9C | 109.5 |
C17—O11—C18 | 117.3 (3) | H9B—C9—H9C | 109.5 |
C6—N1—H1A | 101.4 | O6—C10—O5 | 123.0 (3) |
O1—C1—O2 | 111.1 (2) | O6—C10—C11 | 126.3 (3) |
O1—C1—C2 | 114.3 (3) | O5—C10—C11 | 110.7 (3) |
O2—C1—C2 | 105.9 (2) | C10—C11—H11A | 109.5 |
O1—C1—H1C | 108.4 | C10—C11—H11B | 109.5 |
O2—C1—H1C | 108.4 | H11A—C11—H11B | 109.5 |
C2—C1—H1C | 108.4 | C10—C11—H11C | 109.5 |
O3—C2—C3 | 106.3 (2) | H11A—C11—H11C | 109.5 |
O3—C2—C1 | 107.9 (2) | H11B—C11—H11C | 109.5 |
C3—C2—C1 | 113.3 (3) | O8—C12—O7 | 123.1 (3) |
O3—C2—H2A | 109.7 | O8—C12—C13 | 125.5 (3) |
C3—C2—H2A | 109.7 | O7—C12—C13 | 111.3 (3) |
C1—C2—H2A | 109.7 | C12—C13—C14 | 115.2 (3) |
O5—C3—C2 | 108.9 (2) | C12—C13—H13A | 108.5 |
O5—C3—C4 | 105.4 (2) | C14—C13—H13A | 108.5 |
C2—C3—C4 | 112.8 (3) | C12—C13—H13B | 108.5 |
O5—C3—H3A | 109.9 | C14—C13—H13B | 108.5 |
C2—C3—H3A | 109.9 | H13A—C13—H13B | 107.5 |
C4—C3—H3A | 109.9 | C15—C14—C13 | 113.4 (3) |
O7—C4—C5 | 105.3 (2) | C15—C14—H14A | 108.9 |
O7—C4—C3 | 108.3 (2) | C13—C14—H14A | 108.9 |
C5—C4—C3 | 111.9 (3) | C15—C14—H14B | 108.9 |
O7—C4—H4A | 110.4 | C13—C14—H14B | 108.9 |
C5—C4—H4A | 110.4 | H14A—C14—H14B | 107.7 |
C3—C4—H4A | 110.4 | O9—C15—C14 | 120.5 (4) |
O1—C5—C4 | 112.1 (3) | O9—C15—C16 | 122.0 (4) |
O1—C5—C17 | 107.1 (3) | C14—C15—C16 | 117.5 (4) |
C4—C5—C17 | 109.4 (3) | C15—C16—H16A | 109.5 |
O1—C5—H5A | 109.4 | C15—C16—H16B | 109.5 |
C4—C5—H5A | 109.4 | H16A—C16—H16B | 109.5 |
C17—C5—H5A | 109.4 | C15—C16—H16C | 109.5 |
N1—C6—O2 | 123.1 (3) | H16A—C16—H16C | 109.5 |
N1—C6—C7 | 128.7 (3) | H16B—C16—H16C | 109.5 |
O2—C6—C7 | 108.2 (3) | O10—C17—O11 | 125.6 (3) |
C6—C7—Cl3 | 107.9 (2) | O10—C17—C5 | 126.3 (3) |
C6—C7—Cl2 | 111.2 (3) | O11—C17—C5 | 108.1 (3) |
Cl3—C7—Cl2 | 109.31 (19) | O11—C18—H18A | 109.5 |
C6—C7—Cl1 | 109.7 (2) | O11—C18—H18B | 109.5 |
Cl3—C7—Cl1 | 110.4 (2) | H18A—C18—H18B | 109.5 |
Cl2—C7—Cl1 | 108.34 (16) | O11—C18—H18C | 109.5 |
O4—C8—O3 | 122.4 (3) | H18A—C18—H18C | 109.5 |
O4—C8—C9 | 126.3 (4) | H18B—C18—H18C | 109.5 |
O3—C8—C9 | 111.2 (3) | ||
C5—O1—C1—O2 | −68.1 (3) | C3—C4—C5—C17 | 171.0 (3) |
C5—O1—C1—C2 | 51.8 (3) | C1—O2—C6—N1 | 4.3 (5) |
C6—O2—C1—O1 | −94.0 (3) | C1—O2—C6—C7 | −176.8 (2) |
C6—O2—C1—C2 | 141.3 (3) | N1—C6—C7—Cl3 | 108.7 (4) |
C8—O3—C2—C3 | −151.7 (3) | O2—C6—C7—Cl3 | −70.2 (3) |
C8—O3—C2—C1 | 86.4 (3) | N1—C6—C7—Cl2 | −11.1 (5) |
O1—C1—C2—O3 | 72.9 (3) | O2—C6—C7—Cl2 | 170.0 (2) |
O2—C1—C2—O3 | −164.5 (2) | N1—C6—C7—Cl1 | −131.0 (3) |
O1—C1—C2—C3 | −44.6 (3) | O2—C6—C7—Cl1 | 50.2 (3) |
O2—C1—C2—C3 | 78.1 (3) | C2—O3—C8—O4 | 2.0 (5) |
C10—O5—C3—C2 | −93.1 (3) | C2—O3—C8—C9 | −177.9 (3) |
C10—O5—C3—C4 | 145.6 (3) | C3—O5—C10—O6 | −3.6 (5) |
O3—C2—C3—O5 | 167.4 (2) | C3—O5—C10—C11 | 178.4 (3) |
C1—C2—C3—O5 | −74.3 (3) | C4—O7—C12—O8 | 6.8 (5) |
O3—C2—C3—C4 | −75.9 (3) | C4—O7—C12—C13 | −168.6 (3) |
C1—C2—C3—C4 | 42.4 (3) | O8—C12—C13—C14 | 152.1 (4) |
C12—O7—C4—C5 | −159.4 (3) | O7—C12—C13—C14 | −32.6 (4) |
C12—O7—C4—C3 | 80.8 (3) | C12—C13—C14—C15 | −61.0 (4) |
O5—C3—C4—O7 | −172.2 (2) | C13—C14—C15—O9 | −9.9 (5) |
C2—C3—C4—O7 | 69.0 (3) | C13—C14—C15—C16 | 168.3 (3) |
O5—C3—C4—C5 | 72.1 (3) | C18—O11—C17—O10 | 2.6 (5) |
C2—C3—C4—C5 | −46.6 (3) | C18—O11—C17—C5 | −176.6 (3) |
C1—O1—C5—C4 | −55.9 (3) | O1—C5—C17—O10 | −6.6 (4) |
C1—O1—C5—C17 | −175.8 (2) | C4—C5—C17—O10 | −128.3 (4) |
O7—C4—C5—O1 | −65.1 (3) | O1—C5—C17—O11 | 172.7 (2) |
C3—C4—C5—O1 | 52.4 (3) | C4—C5—C17—O11 | 50.9 (3) |
O7—C4—C5—C17 | 53.6 (3) |
Experimental details
Crystal data | |
Chemical formula | C18H22Cl3NO11 |
Mr | 534.72 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 173 |
a, b, c (Å) | 9.0498 (10), 9.7560 (11), 26.570 (3) |
V (Å3) | 2345.8 (4) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 4.07 |
Crystal size (mm) | 0.41 × 0.30 × 0.28 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID IP area-detector diffractometer |
Absorption correction | Numerical (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.286, 0.395 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16340, 4259, 3893 |
Rint | 0.047 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.100, 1.09 |
No. of reflections | 4259 |
No. of parameters | 302 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.45, −0.48 |
Absolute structure | Flack (1983), 1804 Friedel pairs |
Absolute structure parameter | 0.023 (18) |
Computer programs: RAPID-AUTO (Rigaku, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP (Sheldrick, 2008).
Acknowledgements
The authors thank the NSFC for financial support.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
L-iduronic acids are key components of numerous biologically potent oligosaccharides and glycopeptides (Capila & Linhardt, 2002). For example, heparin, heparan sulfate (Jobron & Jacquinet, 1998), dermatan sulfate (Lee et al., 2004). This series of glycosaminoglycans plays an important role in a diverse set of biological processes which all contain L-idopyranosiduronic acids. To study the structure-activity relationship of such polymers, there is a need for chemically pure oligosaccharide sequences which can be prepared by organic syntheses.
Since iduronic acid itself is not commercially available, syntheses of iduronic acid derivatives (Yu et al., 2004) from a variety of starting materials, including idose, glucose, glycals,and glucuronic acid have been developed (Lubineau et al., 2000 & Lohman et al., 2003). Herein, we have explored a novel and efficient route toward the synthesis of L-idopyranosiduronate trichloroacetimidate which will be used as a key building block to synthesize dermatan sulfate.