organic compounds
4-Aminopyridinium picrate
aCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600 025, India, and bDepartment of Chemistry, Sri Ramakrishna Mission Vidyalaya Arts and Science College, Coimbatore 641 020, India
*Correspondence e-mail: mnpsy2004@yahoo.com
In the title compound, C5H7N2+·C6H2N3O7−, the 4-aminopyridinium cation is essentially planar (r.m.s. deviation = 0.002 Å). The three nitro groups in the picrate anion are twisted away from the attached benzene ring [dihedral angles = 24.1 (1), 9.3 (3) and 21.4 (1)°]. In the the ions are linked into a three-dimensional network by N—H⋯O and C—H⋯O hydrogen bonds.
Related literature
For general background to picrate complexes, see: In et al. (1997); Zaderenko et al. (1997); Ashwell et al. (1995); Owen & White (1976); Shakir et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810011050/ci5057sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810011050/ci5057Isup2.hkl
Equimolar solutions of 4-aminopyridine in methanol and picric acid in methanol were mixed together. The solution was stirred well for 1 h and the precipited salt was filtered off. The salt was repeatedly recrystallised from methanol to get single crystals suitable for X-ray analysis.
N-bound H atoms were located in a difference map and refined isotropically. C-bound H atoms were positioned geometrically (C–H = 0.93 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.2 Ueq(C).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Crystal packing of the title compound. H atoms not involved in hydrogen bonding (dashed lines) have been omitted for clarity. |
C5H7N2+·C6H2N3O7− | F(000) = 664 |
Mr = 323.23 | Dx = 1.603 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1853 reflections |
a = 8.5056 (7) Å | θ = 2.3–28.4° |
b = 11.3338 (9) Å | µ = 0.14 mm−1 |
c = 14.3307 (11) Å | T = 293 K |
β = 104.162 (5)° | Block, colourless |
V = 1339.50 (18) Å3 | 0.22 × 0.19 × 0.16 mm |
Z = 4 |
Bruker SMART APEXII area-detector diffractometer | 3311 independent reflections |
Radiation source: fine-focus sealed tube | 2637 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ω and ϕ scans | θmax = 28.4°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −11→11 |
Tmin = 0.970, Tmax = 0.978 | k = −15→14 |
12562 measured reflections | l = −18→19 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.108 | w = 1/[σ2(Fo2) + (0.0464P)2 + 0.3813P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
3311 reflections | Δρmax = 0.24 e Å−3 |
221 parameters | Δρmin = −0.18 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.022 (2) |
C5H7N2+·C6H2N3O7− | V = 1339.50 (18) Å3 |
Mr = 323.23 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.5056 (7) Å | µ = 0.14 mm−1 |
b = 11.3338 (9) Å | T = 293 K |
c = 14.3307 (11) Å | 0.22 × 0.19 × 0.16 mm |
β = 104.162 (5)° |
Bruker SMART APEXII area-detector diffractometer | 3311 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2637 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.978 | Rint = 0.026 |
12562 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.24 e Å−3 |
3311 reflections | Δρmin = −0.18 e Å−3 |
221 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.87969 (13) | 0.03133 (9) | 0.06515 (7) | 0.0445 (3) | |
O2 | 0.97300 (19) | 0.02415 (13) | 0.25752 (9) | 0.0734 (4) | |
O3 | 1.20628 (16) | 0.09976 (12) | 0.31608 (8) | 0.0632 (4) | |
O4 | 1.35225 (16) | 0.45326 (12) | 0.18781 (9) | 0.0664 (4) | |
O5 | 1.23283 (19) | 0.50978 (11) | 0.04473 (10) | 0.0700 (4) | |
O6 | 0.92217 (17) | 0.22433 (12) | −0.16703 (7) | 0.0654 (4) | |
O7 | 0.76429 (15) | 0.11110 (13) | −0.11519 (8) | 0.0686 (4) | |
N1 | 0.37289 (15) | 0.09339 (12) | 0.03722 (9) | 0.0441 (3) | |
H1 | 0.293 (2) | 0.0390 (18) | 0.0159 (15) | 0.068 (6)* | |
C2 | 0.46638 (18) | 0.09158 (14) | 0.12753 (11) | 0.0463 (4) | |
H2 | 0.4515 | 0.0322 | 0.1694 | 0.056* | |
C3 | 0.58135 (18) | 0.17420 (14) | 0.15875 (11) | 0.0458 (4) | |
H3 | 0.6451 | 0.1710 | 0.2215 | 0.055* | |
C4 | 0.60534 (17) | 0.26532 (13) | 0.09690 (10) | 0.0396 (3) | |
C5 | 0.50530 (19) | 0.26449 (15) | 0.00273 (11) | 0.0481 (4) | |
H5 | 0.5164 | 0.3226 | −0.0410 | 0.058* | |
C6 | 0.39262 (19) | 0.17818 (15) | −0.02361 (11) | 0.0496 (4) | |
H6 | 0.3271 | 0.1781 | −0.0859 | 0.060* | |
N7 | 0.71790 (19) | 0.34716 (14) | 0.12736 (12) | 0.0543 (4) | |
H7A | 0.774 (3) | 0.347 (2) | 0.1874 (18) | 0.083 (7)* | |
H7B | 0.721 (3) | 0.404 (2) | 0.0858 (16) | 0.072 (6)* | |
C8 | 0.96034 (15) | 0.12354 (11) | 0.07454 (9) | 0.0325 (3) | |
C9 | 1.06752 (16) | 0.16121 (11) | 0.16521 (9) | 0.0338 (3) | |
C10 | 1.15984 (17) | 0.26074 (12) | 0.17653 (9) | 0.0364 (3) | |
H10 | 1.2267 | 0.2793 | 0.2364 | 0.044* | |
C11 | 1.15372 (17) | 0.33411 (11) | 0.09862 (9) | 0.0356 (3) | |
C12 | 1.05870 (16) | 0.30622 (11) | 0.00840 (9) | 0.0346 (3) | |
H12 | 1.0567 | 0.3554 | −0.0438 | 0.041* | |
C13 | 0.96746 (15) | 0.20496 (11) | −0.00293 (8) | 0.0327 (3) | |
N14 | 1.08227 (17) | 0.08920 (11) | 0.25121 (8) | 0.0442 (3) | |
N15 | 1.25248 (16) | 0.43901 (11) | 0.11136 (9) | 0.0455 (3) | |
N16 | 0.87848 (15) | 0.17853 (11) | −0.10042 (8) | 0.0400 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0511 (6) | 0.0403 (6) | 0.0398 (5) | −0.0122 (5) | 0.0065 (4) | 0.0028 (4) |
O2 | 0.1011 (11) | 0.0720 (9) | 0.0468 (7) | −0.0287 (8) | 0.0177 (7) | 0.0152 (6) |
O3 | 0.0769 (8) | 0.0652 (8) | 0.0380 (6) | 0.0098 (6) | −0.0041 (6) | 0.0119 (5) |
O4 | 0.0691 (8) | 0.0613 (8) | 0.0600 (7) | −0.0231 (6) | −0.0010 (6) | −0.0163 (6) |
O5 | 0.1005 (11) | 0.0484 (7) | 0.0610 (8) | −0.0287 (7) | 0.0195 (7) | 0.0038 (6) |
O6 | 0.0881 (9) | 0.0751 (8) | 0.0285 (5) | −0.0328 (7) | 0.0058 (5) | 0.0052 (5) |
O7 | 0.0656 (8) | 0.0859 (9) | 0.0437 (6) | −0.0384 (7) | −0.0070 (5) | 0.0073 (6) |
N1 | 0.0392 (6) | 0.0432 (7) | 0.0462 (7) | −0.0040 (6) | 0.0036 (5) | −0.0038 (5) |
C2 | 0.0447 (8) | 0.0427 (8) | 0.0476 (8) | −0.0033 (7) | 0.0037 (6) | 0.0092 (6) |
C3 | 0.0437 (8) | 0.0485 (9) | 0.0393 (7) | −0.0047 (7) | −0.0010 (6) | 0.0064 (6) |
C4 | 0.0370 (7) | 0.0388 (7) | 0.0434 (7) | 0.0002 (6) | 0.0103 (6) | −0.0004 (6) |
C5 | 0.0498 (8) | 0.0520 (9) | 0.0413 (8) | −0.0002 (7) | 0.0090 (6) | 0.0107 (7) |
C6 | 0.0475 (8) | 0.0611 (10) | 0.0363 (7) | 0.0000 (7) | 0.0025 (6) | 0.0014 (7) |
N7 | 0.0582 (9) | 0.0496 (8) | 0.0526 (8) | −0.0150 (7) | 0.0087 (7) | 0.0019 (7) |
C8 | 0.0353 (6) | 0.0326 (6) | 0.0303 (6) | 0.0013 (5) | 0.0090 (5) | −0.0008 (5) |
C9 | 0.0420 (7) | 0.0331 (6) | 0.0267 (6) | 0.0048 (5) | 0.0094 (5) | 0.0013 (5) |
C10 | 0.0440 (7) | 0.0366 (7) | 0.0266 (6) | 0.0026 (6) | 0.0046 (5) | −0.0065 (5) |
C11 | 0.0424 (7) | 0.0304 (6) | 0.0344 (6) | −0.0039 (5) | 0.0103 (5) | −0.0060 (5) |
C12 | 0.0431 (7) | 0.0317 (6) | 0.0296 (6) | −0.0004 (5) | 0.0102 (5) | 0.0006 (5) |
C13 | 0.0366 (7) | 0.0342 (6) | 0.0260 (6) | −0.0004 (5) | 0.0053 (5) | −0.0006 (5) |
N14 | 0.0647 (8) | 0.0376 (6) | 0.0309 (6) | 0.0053 (6) | 0.0130 (5) | 0.0027 (5) |
N15 | 0.0547 (7) | 0.0380 (6) | 0.0451 (7) | −0.0098 (6) | 0.0147 (6) | −0.0108 (5) |
N16 | 0.0461 (7) | 0.0396 (6) | 0.0306 (5) | −0.0053 (5) | 0.0021 (5) | 0.0023 (5) |
O1—C8 | 1.2392 (16) | C5—C6 | 1.357 (2) |
O2—N14 | 1.2069 (18) | C5—H5 | 0.93 |
O3—N14 | 1.2293 (17) | C6—H6 | 0.93 |
O4—N15 | 1.2214 (17) | N7—H7A | 0.88 (2) |
O5—N15 | 1.2267 (18) | N7—H7B | 0.88 (2) |
O6—N16 | 1.2216 (15) | C8—C13 | 1.4562 (17) |
O7—N16 | 1.2130 (16) | C8—C9 | 1.4568 (17) |
N1—C6 | 1.335 (2) | C9—C10 | 1.3613 (19) |
N1—C2 | 1.3432 (19) | C9—N14 | 1.4578 (17) |
N1—H1 | 0.91 (2) | C10—C11 | 1.3829 (19) |
C2—C3 | 1.349 (2) | C10—H10 | 0.93 |
C2—H2 | 0.93 | C11—C12 | 1.3832 (18) |
C3—C4 | 1.408 (2) | C11—N15 | 1.4413 (17) |
C3—H3 | 0.93 | C12—C13 | 1.3726 (18) |
C4—N7 | 1.328 (2) | C12—H12 | 0.93 |
C4—C5 | 1.408 (2) | C13—N16 | 1.4481 (16) |
C6—N1—C2 | 120.05 (13) | C10—C9—C8 | 124.47 (11) |
C6—N1—H1 | 118.0 (13) | C10—C9—N14 | 115.81 (12) |
C2—N1—H1 | 121.9 (13) | C8—C9—N14 | 119.71 (12) |
N1—C2—C3 | 121.28 (14) | C9—C10—C11 | 119.70 (12) |
N1—C2—H2 | 119.4 | C9—C10—H10 | 120.1 |
C3—C2—H2 | 119.4 | C11—C10—H10 | 120.1 |
C2—C3—C4 | 120.36 (14) | C10—C11—C12 | 121.01 (12) |
C2—C3—H3 | 119.8 | C10—C11—N15 | 119.22 (12) |
C4—C3—H3 | 119.8 | C12—C11—N15 | 119.74 (12) |
N7—C4—C3 | 120.62 (14) | C13—C12—C11 | 119.06 (12) |
N7—C4—C5 | 122.52 (15) | C13—C12—H12 | 120.5 |
C3—C4—C5 | 116.85 (13) | C11—C12—H12 | 120.5 |
C6—C5—C4 | 119.43 (14) | C12—C13—N16 | 115.72 (11) |
C6—C5—H5 | 120.3 | C12—C13—C8 | 124.57 (11) |
C4—C5—H5 | 120.3 | N16—C13—C8 | 119.67 (11) |
N1—C6—C5 | 122.02 (14) | O2—N14—O3 | 122.46 (13) |
N1—C6—H6 | 119.0 | O2—N14—C9 | 119.79 (13) |
C5—C6—H6 | 119.0 | O3—N14—C9 | 117.73 (13) |
C4—N7—H7A | 119.8 (16) | O4—N15—O5 | 122.97 (14) |
C4—N7—H7B | 115.0 (14) | O4—N15—C11 | 118.57 (13) |
H7A—N7—H7B | 125 (2) | O5—N15—C11 | 118.46 (13) |
O1—C8—C13 | 125.23 (12) | O7—N16—O6 | 121.00 (12) |
O1—C8—C9 | 123.57 (12) | O7—N16—C13 | 120.38 (11) |
C13—C8—C9 | 111.14 (11) | O6—N16—C13 | 118.61 (11) |
C6—N1—C2—C3 | −0.1 (2) | C11—C12—C13—N16 | −176.65 (12) |
N1—C2—C3—C4 | 0.4 (2) | C11—C12—C13—C8 | 1.1 (2) |
C2—C3—C4—N7 | 179.73 (16) | O1—C8—C13—C12 | −179.30 (13) |
C2—C3—C4—C5 | −0.4 (2) | C9—C8—C13—C12 | −2.13 (18) |
N7—C4—C5—C6 | −179.98 (16) | O1—C8—C13—N16 | −1.6 (2) |
C3—C4—C5—C6 | 0.2 (2) | C9—C8—C13—N16 | 175.54 (11) |
C2—N1—C6—C5 | −0.2 (2) | C10—C9—N14—O2 | 155.92 (14) |
C4—C5—C6—N1 | 0.1 (2) | C8—C9—N14—O2 | −24.9 (2) |
O1—C8—C9—C10 | 178.44 (13) | C10—C9—N14—O3 | −22.44 (18) |
C13—C8—C9—C10 | 1.22 (18) | C8—C9—N14—O3 | 156.74 (13) |
O1—C8—C9—N14 | −0.7 (2) | C10—C11—N15—O4 | 8.1 (2) |
C13—C8—C9—N14 | −177.89 (11) | C12—C11—N15—O4 | −169.71 (13) |
C8—C9—C10—C11 | 0.7 (2) | C10—C11—N15—O5 | −172.10 (14) |
N14—C9—C10—C11 | 179.83 (12) | C12—C11—N15—O5 | 10.1 (2) |
C9—C10—C11—C12 | −1.9 (2) | C12—C13—N16—O7 | −160.64 (14) |
C9—C10—C11—N15 | −179.76 (12) | C8—C13—N16—O7 | 21.5 (2) |
C10—C11—C12—C13 | 1.1 (2) | C12—C13—N16—O6 | 20.26 (19) |
N15—C11—C12—C13 | 178.88 (12) | C8—C13—N16—O6 | −157.61 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.91 (2) | 1.82 (2) | 2.6877 (16) | 158 (2) |
N1—H1···O7i | 0.91 (2) | 2.34 (2) | 2.9359 (19) | 122 (2) |
N7—H7A···O6ii | 0.88 (2) | 2.30 (3) | 3.139 (2) | 160 (2) |
N7—H7B···O5iii | 0.88 (2) | 2.23 (2) | 3.065 (2) | 158 (2) |
C2—H2···O4iv | 0.93 | 2.47 | 3.1373 (19) | 129 |
C2—H2···O7i | 0.93 | 2.43 | 2.9980 (19) | 119 |
Symmetry codes: (i) −x+1, −y, −z; (ii) x, −y+1/2, z+1/2; (iii) −x+2, −y+1, −z; (iv) −x+2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C5H7N2+·C6H2N3O7− |
Mr | 323.23 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 8.5056 (7), 11.3338 (9), 14.3307 (11) |
β (°) | 104.162 (5) |
V (Å3) | 1339.50 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.22 × 0.19 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART APEXII area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.970, 0.978 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12562, 3311, 2637 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.108, 1.05 |
No. of reflections | 3311 |
No. of parameters | 221 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.24, −0.18 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.91 (2) | 1.82 (2) | 2.6877 (16) | 158 (2) |
N1—H1···O7i | 0.91 (2) | 2.34 (2) | 2.9359 (19) | 122 (2) |
N7—H7A···O6ii | 0.88 (2) | 2.30 (3) | 3.139 (2) | 160 (2) |
N7—H7B···O5iii | 0.88 (2) | 2.23 (2) | 3.065 (2) | 158 (2) |
C2—H2···O4iv | 0.93 | 2.47 | 3.1373 (19) | 129 |
C2—H2···O7i | 0.93 | 2.43 | 2.9980 (19) | 119 |
Symmetry codes: (i) −x+1, −y, −z; (ii) x, −y+1/2, z+1/2; (iii) −x+2, −y+1, −z; (iv) −x+2, y−1/2, −z+1/2. |
Acknowledgements
The authors wish to thank TBI Consultancy, University of Madras, for the data collection.
References
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It is well known that picric acid forms charge transfer molecular complexes with a number of aromatic compounds such as aromatic hydrocarbons and amines through electrostatic or hydrogen bonding interactions (In et al., 1997; Zaderenko et al., 1997). The bonding of donor-acceptor picric acid complexes strongly depends on the nature of partners. Some of the picric acid complexes crystallize in centrosymmetric space group though they possess non-linear optical (NLO) properties (Shakir et al., 2009). This is due to the aggregation of the donor and acceptor molecules in a non-centrosymmetric manner which contribute to the bulk susceptibility from intermolecular charge transfer process (Ashwell et al., 1995; Owen & White, 1976).
The 4-aminopyridinium cation is essentially planar (r.m.s. deviation 0.002 Å). In the picrate anion, as a result of deprotanation the C8—O1 distance [1.2392 (16) Å] shows a partial double bond character, and the C8—C9 [1.4568 (17) Å] and C8—C13 [1.4562 (17) Å] distances are longer compared to other aromatic C—C distances. The three nitro groups are twisted out of the attached benzene ring by 24.1 (1)° [N14/O2/O3], 9.3 (3)° [N15/O4/O5] and 21.4 (1)° [N16/O6/O7], which facilitate the interactions between the neighbouring molecules.
The ions are linked through N—H···O and C—H···O hydrogen bonds to form a three-dimensional network as shown in Fig. 2.