organic compounds
N,N′-Bis(2-aminophenyl)-3,4-diphenylthiophene-2,5-dicarboxamide acetonitrile solvate
aBaku State University, Z. Khalilov St 23, Baku AZ-1148, Azerbaijan, bChemistry Department, M. V. Lomonosov Moscow State University, Leninskie gory 1/3, Moscow 119991, Russian Federation, and cA. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, Vavilov St 28, B-334, Moscow 119991, Russian Federation
*Correspondence e-mail: vkh@xray.ineos.ac.ru
In the title solvate, C30H24N4O2S·CH3CN, the substituted thiophene possesses approximate Cs(m) intrinsic symmetry, with the mirror plane passing through the S atom and the mid-point of the (Ph)C—C(Ph) bond. Despite the main backbone of the molecule being a long chain of conjugated bonds, it adopts a non-planar conformation due to the presence of various intra- and intermolecular hydrogen bonds. The hydrogen bonds result in twist configurations for both the amido and aminophenyl fragments relative to the central thiophene ring. There are two intramolecular Namine—H⋯O hydrogen bonds within the thiophene-2,5-dicarboxamide molecule that form seven-membered rings. In the crystal, the thiophene-2,5-dicarboxamide molecules form inversion dimers by four amide–amine N—H⋯N hydrogen bonds. The dimers are further linked into layers propagating in (100) both directly (via Namine—H⋯O hydrogen bonds) and through the acetonitrile solvate molecules (via amine–cyano N—H⋯N and CMe—H⋯O interactions).
Related literature
For general background to aromatic diamide diamines, see: Picard et al. (2001); Schneider & Yatsimirsky (2008). For related compounds, see: Sessler et al. (2005a,b), Katayev et al. (2007); Askerov et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL ; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536810008780/fl2294sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810008780/fl2294Isup2.hkl
2,5-Bis((2-thio-1,3-thiazolidine-3-yl)carbonyl)-3,4-diphenylthiophene (II). 3,4-Diphenylthiophene-2,5-dicarboxylic acid (9 g, 27.7 mmol) was suspended in 35 ml freshly distilled SOCl2 in the presence of several drops of DMF. The resulting mixture was heated at reflux for 1 hour. The excess SOCl2 was removed under reduced pressure and the residue was further dried at 373 K under high vacuum. The thiophene diacid chloride obtained in this way was dissolved in 130 ml dry THF and added drop-wise during a 2 hour period to a solution containing 1,3-thiazolidine-2-thione (6.6 g, 55.4 mmol) and triethylamine (20 ml) in 330 ml dry THF. During this process carried out under continuous stirring the reaction temperature was kept at 323 K. After the addition was complete the reaction mixture was maintained under the same conditions for an additional 2 hours and then for a further 16 h at room temperature with stirring. The reaction mixture was then filtered, and the resulting solid was washed with cold THF. The filtrate was reduced in volume to a dark paste using a rotary evaporator. This paste-like material was then taken up into 30 ml of ethyl acetate. After this mixing procedure, crude product was filtered off as a dark-yellow powder. Recrystallization from dichloroethane yielded 10.8 g (74%) of yellow crystals. M.p. = 527-529 K. Found: C, 54.73; H, 3.44; N, 5.32. Calcd for C24H18N2O2S5: C, 54.98; H, 3.23; N, 5.36. 1H NMR (400 MHz, CDCl3): \d = 2.72 (t, 4H), 4.21 (t, 4H), 7.05 (m, 4H), 7.22 (m. 6H). 13C NMR (100 MHz, CDCl3): \d = 29.61, 55.80, 127.90, 127.99, 129.60, 134.21, 136.08, 144.34, 164.16, 200.37.
(ESI+): 548.9 [M+Na]+, 1074.3 [2M+Na]+, 1601.8 [3M+Na]+.(II) (5.0 g, 9.45 mmol) was added to a solution of 1,2-diaminobenzene (3.1 g, 28.4 mmol) in 125 ml of dry methylene chloride. The resulting mixture was stirred at room temperature for 2 days. At this juncture, the desired product, compound I, was obtained via filtration in a yield of 78% (3.7 g). M.p. = 501-503 K. Found: C, 71.40; H, 4.77; N, 11.45. Calcd for C30H24N4O2S: C, 71.41; H, 4.79; N, 11.10. 1H NMR (400 MHz, DMSO-d6): δ = 4.50 (s, 4H), 6.53 (t, 2H), 6.68 (d, 2H), 6.90 (t, 2H), 7.02 (d, 2H), 7.17 (m, 4H), 7.25 (m, 6H), 8.76 (s, 2H). 13C NMR (100 MHz, DMSO-d6): δ = 127.48, 127.90, 133.71, 136.90, 138.13, 139.58, 139.37, 141.32, 145.59, 147.12, 153.39, 153.48, 171.99. (ESI+): 527.1 [M+Na]+, 1030.9 [2M+Na]+, 1535.8 [3M+Na]+. Crystals suitable for X-ray diffraction were obtained by slow evaporation from an acetonitrile solution.
The hydrogen atoms of the amino-groups as well as the solvate acetonitrile molecule were localized in the difference-Fourier map and included in the
with fixed positional (C–H = 0.98 Å) and isotropic displacement parameters [Uiso(H) = 1.5Ueq(C) for CH3-group and Uiso(H) = 1.2Ueq(N) for amino groups]. The other hydrogen atoms were placed in calculated positions with C–H = 0.95 Å and refined in the riding model with fixed isotropic displacement parameters [Uiso(H) = 1.2Ueq(C)].Data collection: SMART (Bruker, 1998); cell
SAINT-Plus (Bruker, 1998); data reduction: SAINT-Plus (Bruker, 1998); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Synthesis of the ligand I. | |
Fig. 2. Molecular structure of I.CH3CN. Displacement ellipsoids are shown at the 50% probability level. Dashed lines indicate the hydrogen bonds. | |
Fig. 3. Centrosymmetrical dimers of I. Displacement ellipsoids are shown at the 50% probability level. Only H-atoms participating in the formation of the hydrogen bonds are presented. Dashed lines indicate the hydrogen bonds. | |
Fig. 4. Crystal packing of dimers of I. Dashed lines indicate the hydrogen bonds. |
C30H24N4O2S·C2H3N | Z = 2 |
Mr = 545.65 | F(000) = 572 |
Triclinic, P1 | Dx = 1.339 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.0314 (9) Å | Cell parameters from 7103 reflections |
b = 11.5470 (11) Å | θ = 2.3–28.0° |
c = 13.0140 (12) Å | µ = 0.16 mm−1 |
α = 93.206 (2)° | T = 120 K |
β = 92.504 (2)° | Prism, yellow |
γ = 90.017 (2)° | 0.24 × 0.21 × 0.18 mm |
V = 1353.7 (2) Å3 |
Bruker SMART 1K CCD diffractometer | 6491 independent reflections |
Radiation source: normal-focus sealed tube | 5153 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ϕ and ω scans | θmax = 28.1°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1998) | h = −11→11 |
Tmin = 0.965, Tmax = 0.972 | k = −15→15 |
13964 measured reflections | l = −16→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.06P)2 + 0.82P] where P = (Fo2 + 2Fc2)/3 |
6491 reflections | (Δ/σ)max = 0.001 |
362 parameters | Δρmax = 0.40 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C30H24N4O2S·C2H3N | γ = 90.017 (2)° |
Mr = 545.65 | V = 1353.7 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.0314 (9) Å | Mo Kα radiation |
b = 11.5470 (11) Å | µ = 0.16 mm−1 |
c = 13.0140 (12) Å | T = 120 K |
α = 93.206 (2)° | 0.24 × 0.21 × 0.18 mm |
β = 92.504 (2)° |
Bruker SMART 1K CCD diffractometer | 6491 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1998) | 5153 reflections with I > 2σ(I) |
Tmin = 0.965, Tmax = 0.972 | Rint = 0.018 |
13964 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.40 e Å−3 |
6491 reflections | Δρmin = −0.26 e Å−3 |
362 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.32334 (4) | 0.62254 (3) | 0.58968 (3) | 0.02296 (11) | |
O1 | 0.24008 (14) | 0.49411 (10) | 0.75610 (9) | 0.0285 (3) | |
O2 | 0.35642 (14) | 0.83180 (10) | 0.48613 (9) | 0.0309 (3) | |
N1 | 0.23655 (15) | 0.31177 (11) | 0.68036 (10) | 0.0241 (3) | |
H1 | 0.2481 | 0.2662 | 0.6220 | 0.029* | |
N2 | 0.42197 (16) | 0.33682 (12) | 0.86449 (11) | 0.0276 (3) | |
H2A | 0.4023 | 0.4114 | 0.8488 | 0.033* | |
H2B | 0.4786 | 0.3342 | 0.9242 | 0.033* | |
N3 | 0.40740 (15) | 0.75501 (11) | 0.32722 (10) | 0.0239 (3) | |
H3 | 0.4154 | 0.6902 | 0.2858 | 0.029* | |
N4 | 0.62869 (16) | 0.91705 (12) | 0.41468 (11) | 0.0281 (3) | |
H4A | 0.5702 | 0.8894 | 0.4633 | 0.034* | |
H4B | 0.6792 | 0.9802 | 0.4416 | 0.034* | |
C1 | 0.26943 (17) | 0.47972 (13) | 0.57739 (12) | 0.0225 (3) | |
C2 | 0.25071 (17) | 0.43918 (13) | 0.47550 (12) | 0.0216 (3) | |
C3 | 0.28338 (17) | 0.52709 (13) | 0.40610 (12) | 0.0217 (3) | |
C4 | 0.32623 (17) | 0.63027 (14) | 0.45839 (12) | 0.0225 (3) | |
C5 | 0.24737 (17) | 0.42824 (14) | 0.67855 (12) | 0.0229 (3) | |
C6 | 0.20591 (18) | 0.25151 (13) | 0.77046 (12) | 0.0238 (3) | |
C7 | 0.29838 (18) | 0.26348 (14) | 0.86012 (12) | 0.0250 (3) | |
C8 | 0.2672 (2) | 0.19380 (15) | 0.94138 (13) | 0.0308 (4) | |
H8 | 0.3280 | 0.1996 | 1.0029 | 0.037* | |
C9 | 0.1493 (2) | 0.11687 (16) | 0.93351 (14) | 0.0346 (4) | |
H9 | 0.1306 | 0.0703 | 0.9895 | 0.042* | |
C10 | 0.0585 (2) | 0.10680 (16) | 0.84531 (15) | 0.0336 (4) | |
H10 | −0.0227 | 0.0541 | 0.8404 | 0.040* | |
C11 | 0.08769 (19) | 0.17493 (14) | 0.76388 (13) | 0.0283 (3) | |
H11 | 0.0257 | 0.1688 | 0.7029 | 0.034* | |
C12 | 0.19053 (17) | 0.32216 (13) | 0.44120 (12) | 0.0221 (3) | |
C13 | 0.04857 (18) | 0.29170 (14) | 0.46735 (13) | 0.0263 (3) | |
H13 | −0.0102 | 0.3464 | 0.5045 | 0.032* | |
C14 | −0.0081 (2) | 0.18195 (15) | 0.43950 (14) | 0.0314 (4) | |
H14 | −0.1044 | 0.1614 | 0.4589 | 0.038* | |
C15 | 0.0755 (2) | 0.10268 (15) | 0.38373 (14) | 0.0323 (4) | |
H15 | 0.0366 | 0.0276 | 0.3651 | 0.039* | |
C16 | 0.2158 (2) | 0.13241 (15) | 0.35487 (14) | 0.0306 (4) | |
H16 | 0.2724 | 0.0784 | 0.3154 | 0.037* | |
C17 | 0.27350 (19) | 0.24181 (14) | 0.38395 (13) | 0.0269 (3) | |
H17 | 0.3701 | 0.2619 | 0.3647 | 0.032* | |
C18 | 0.25880 (17) | 0.51370 (13) | 0.29169 (12) | 0.0225 (3) | |
C19 | 0.3573 (2) | 0.45298 (15) | 0.22964 (13) | 0.0282 (3) | |
H19 | 0.4423 | 0.4177 | 0.2600 | 0.034* | |
C20 | 0.3317 (2) | 0.44371 (16) | 0.12320 (14) | 0.0343 (4) | |
H20 | 0.3991 | 0.4015 | 0.0814 | 0.041* | |
C21 | 0.2092 (2) | 0.49542 (17) | 0.07780 (14) | 0.0360 (4) | |
H21 | 0.1922 | 0.4888 | 0.0051 | 0.043* | |
C22 | 0.1116 (2) | 0.55669 (18) | 0.13886 (15) | 0.0383 (4) | |
H22 | 0.0277 | 0.5928 | 0.1080 | 0.046* | |
C23 | 0.1357 (2) | 0.56590 (16) | 0.24561 (13) | 0.0307 (4) | |
H23 | 0.0679 | 0.6080 | 0.2871 | 0.037* | |
C24 | 0.36380 (17) | 0.74725 (13) | 0.42408 (12) | 0.0229 (3) | |
C25 | 0.43963 (18) | 0.86137 (13) | 0.28064 (12) | 0.0240 (3) | |
C26 | 0.54734 (18) | 0.93901 (14) | 0.32371 (13) | 0.0249 (3) | |
C27 | 0.5790 (2) | 1.03668 (15) | 0.26837 (14) | 0.0319 (4) | |
H27 | 0.6484 | 1.0927 | 0.2970 | 0.038* | |
C28 | 0.5105 (2) | 1.05222 (16) | 0.17287 (15) | 0.0363 (4) | |
H28 | 0.5352 | 1.1178 | 0.1360 | 0.044* | |
C29 | 0.4066 (2) | 0.97321 (16) | 0.13054 (14) | 0.0346 (4) | |
H29 | 0.3604 | 0.9839 | 0.0647 | 0.041* | |
C30 | 0.37053 (19) | 0.87819 (15) | 0.18545 (13) | 0.0282 (3) | |
H30 | 0.2979 | 0.8243 | 0.1576 | 0.034* | |
N5 | 0.3348 (2) | 0.71107 (17) | 0.94378 (15) | 0.0518 (5) | |
C31 | 0.2246 (3) | 0.71979 (17) | 0.89885 (16) | 0.0402 (5) | |
C32 | 0.0842 (3) | 0.7313 (2) | 0.8419 (2) | 0.0555 (6) | |
H32A | 0.0772 | 0.6723 | 0.7847 | 0.083* | |
H32B | 0.0027 | 0.7209 | 0.8878 | 0.083* | |
H32C | 0.0778 | 0.8087 | 0.8146 | 0.083* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0254 (2) | 0.02091 (19) | 0.02226 (19) | −0.00233 (14) | 0.00057 (14) | −0.00059 (14) |
O1 | 0.0368 (7) | 0.0234 (6) | 0.0250 (6) | 0.0031 (5) | 0.0028 (5) | −0.0015 (4) |
O2 | 0.0380 (7) | 0.0236 (6) | 0.0313 (6) | −0.0048 (5) | 0.0103 (5) | −0.0040 (5) |
N1 | 0.0285 (7) | 0.0221 (6) | 0.0218 (6) | 0.0015 (5) | 0.0010 (5) | 0.0006 (5) |
N2 | 0.0301 (7) | 0.0267 (7) | 0.0255 (7) | −0.0006 (6) | −0.0023 (6) | 0.0002 (5) |
N3 | 0.0270 (7) | 0.0192 (6) | 0.0254 (7) | −0.0022 (5) | 0.0024 (5) | −0.0008 (5) |
N4 | 0.0283 (7) | 0.0262 (7) | 0.0294 (7) | −0.0042 (6) | −0.0005 (6) | −0.0009 (6) |
C1 | 0.0207 (7) | 0.0202 (7) | 0.0264 (8) | 0.0001 (6) | 0.0002 (6) | 0.0016 (6) |
C2 | 0.0192 (7) | 0.0215 (7) | 0.0239 (7) | 0.0014 (6) | 0.0006 (6) | −0.0001 (6) |
C3 | 0.0202 (7) | 0.0217 (7) | 0.0232 (7) | 0.0011 (6) | 0.0008 (6) | 0.0006 (6) |
C4 | 0.0206 (7) | 0.0237 (7) | 0.0233 (7) | −0.0002 (6) | 0.0017 (6) | 0.0009 (6) |
C5 | 0.0216 (7) | 0.0231 (7) | 0.0240 (7) | 0.0019 (6) | 0.0010 (6) | 0.0017 (6) |
C6 | 0.0282 (8) | 0.0202 (7) | 0.0235 (7) | 0.0029 (6) | 0.0038 (6) | 0.0018 (6) |
C7 | 0.0260 (8) | 0.0238 (8) | 0.0253 (8) | 0.0036 (6) | 0.0025 (6) | 0.0000 (6) |
C8 | 0.0378 (10) | 0.0308 (9) | 0.0241 (8) | 0.0021 (7) | −0.0007 (7) | 0.0043 (7) |
C9 | 0.0394 (10) | 0.0331 (9) | 0.0328 (9) | 0.0003 (8) | 0.0064 (8) | 0.0106 (7) |
C10 | 0.0309 (9) | 0.0301 (9) | 0.0405 (10) | −0.0044 (7) | 0.0023 (8) | 0.0075 (7) |
C11 | 0.0283 (8) | 0.0245 (8) | 0.0319 (9) | −0.0006 (6) | −0.0026 (7) | 0.0032 (6) |
C12 | 0.0241 (8) | 0.0215 (7) | 0.0205 (7) | −0.0014 (6) | −0.0019 (6) | 0.0018 (6) |
C13 | 0.0240 (8) | 0.0267 (8) | 0.0277 (8) | 0.0007 (6) | 0.0006 (6) | −0.0023 (6) |
C14 | 0.0258 (8) | 0.0319 (9) | 0.0361 (9) | −0.0082 (7) | 0.0003 (7) | 0.0006 (7) |
C15 | 0.0370 (10) | 0.0220 (8) | 0.0371 (9) | −0.0073 (7) | −0.0031 (7) | −0.0020 (7) |
C16 | 0.0327 (9) | 0.0247 (8) | 0.0336 (9) | 0.0025 (7) | 0.0013 (7) | −0.0043 (7) |
C17 | 0.0255 (8) | 0.0245 (8) | 0.0308 (8) | −0.0005 (6) | 0.0040 (6) | 0.0009 (6) |
C18 | 0.0242 (8) | 0.0205 (7) | 0.0226 (7) | −0.0051 (6) | −0.0007 (6) | 0.0008 (6) |
C19 | 0.0294 (9) | 0.0286 (8) | 0.0266 (8) | 0.0008 (7) | 0.0016 (6) | −0.0002 (6) |
C20 | 0.0403 (10) | 0.0357 (9) | 0.0264 (9) | −0.0049 (8) | 0.0054 (7) | −0.0052 (7) |
C21 | 0.0464 (11) | 0.0377 (10) | 0.0232 (8) | −0.0113 (8) | −0.0027 (7) | −0.0005 (7) |
C22 | 0.0375 (10) | 0.0440 (11) | 0.0325 (9) | −0.0004 (8) | −0.0099 (8) | 0.0044 (8) |
C23 | 0.0298 (9) | 0.0330 (9) | 0.0287 (9) | 0.0030 (7) | −0.0011 (7) | −0.0006 (7) |
C24 | 0.0222 (7) | 0.0208 (7) | 0.0258 (8) | −0.0011 (6) | 0.0024 (6) | 0.0000 (6) |
C25 | 0.0248 (8) | 0.0206 (7) | 0.0272 (8) | 0.0007 (6) | 0.0056 (6) | 0.0020 (6) |
C26 | 0.0248 (8) | 0.0217 (7) | 0.0282 (8) | 0.0016 (6) | 0.0049 (6) | −0.0002 (6) |
C27 | 0.0309 (9) | 0.0256 (8) | 0.0397 (10) | −0.0046 (7) | 0.0071 (7) | 0.0029 (7) |
C28 | 0.0400 (10) | 0.0297 (9) | 0.0408 (10) | −0.0012 (8) | 0.0075 (8) | 0.0121 (8) |
C29 | 0.0366 (10) | 0.0361 (10) | 0.0319 (9) | 0.0040 (8) | 0.0021 (7) | 0.0097 (7) |
C30 | 0.0275 (8) | 0.0273 (8) | 0.0297 (8) | 0.0010 (7) | 0.0019 (7) | 0.0014 (7) |
N5 | 0.0561 (12) | 0.0509 (11) | 0.0484 (11) | −0.0142 (9) | −0.0086 (9) | 0.0104 (9) |
C31 | 0.0526 (13) | 0.0312 (10) | 0.0372 (10) | −0.0072 (9) | 0.0043 (9) | 0.0038 (8) |
C32 | 0.0540 (14) | 0.0523 (14) | 0.0587 (15) | 0.0085 (11) | −0.0028 (11) | −0.0056 (11) |
S1—C1 | 1.7162 (16) | C13—C14 | 1.390 (2) |
S1—C4 | 1.7171 (16) | C13—H13 | 0.9500 |
O1—C5 | 1.2334 (19) | C14—C15 | 1.381 (3) |
O2—C24 | 1.2354 (19) | C14—H14 | 0.9500 |
N1—C5 | 1.350 (2) | C15—C16 | 1.386 (3) |
N1—C6 | 1.434 (2) | C15—H15 | 0.9500 |
N1—H1 | 0.9092 | C16—C17 | 1.393 (2) |
N2—C7 | 1.398 (2) | C16—H16 | 0.9500 |
N2—H2A | 0.9120 | C17—H17 | 0.9500 |
N2—H2B | 0.9136 | C18—C19 | 1.391 (2) |
N3—C24 | 1.345 (2) | C18—C23 | 1.393 (2) |
N3—C25 | 1.435 (2) | C19—C20 | 1.392 (2) |
N3—H3 | 0.9029 | C19—H19 | 0.9500 |
N4—C26 | 1.401 (2) | C20—C21 | 1.383 (3) |
N4—H4A | 0.9125 | C20—H20 | 0.9500 |
N4—H4B | 0.9060 | C21—C22 | 1.381 (3) |
C1—C2 | 1.384 (2) | C21—H21 | 0.9500 |
C1—C5 | 1.495 (2) | C22—C23 | 1.395 (2) |
C2—C3 | 1.435 (2) | C22—H22 | 0.9500 |
C2—C12 | 1.494 (2) | C23—H23 | 0.9500 |
C3—C4 | 1.385 (2) | C25—C30 | 1.386 (2) |
C3—C18 | 1.495 (2) | C25—C26 | 1.400 (2) |
C4—C24 | 1.490 (2) | C26—C27 | 1.407 (2) |
C6—C11 | 1.383 (2) | C27—C28 | 1.385 (3) |
C6—C7 | 1.405 (2) | C27—H27 | 0.9500 |
C7—C8 | 1.402 (2) | C28—C29 | 1.384 (3) |
C8—C9 | 1.383 (3) | C28—H28 | 0.9500 |
C8—H8 | 0.9500 | C29—C30 | 1.389 (2) |
C9—C10 | 1.381 (3) | C29—H29 | 0.9500 |
C9—H9 | 0.9500 | C30—H30 | 0.9500 |
C10—C11 | 1.389 (2) | N5—C31 | 1.139 (3) |
C10—H10 | 0.9500 | C31—C32 | 1.451 (3) |
C11—H11 | 0.9500 | C32—H32A | 0.9800 |
C12—C13 | 1.391 (2) | C32—H32B | 0.9800 |
C12—C17 | 1.396 (2) | C32—H32C | 0.9800 |
C1—S1—C4 | 91.55 (8) | C14—C15—C16 | 120.17 (16) |
C5—N1—C6 | 124.09 (13) | C14—C15—H15 | 119.9 |
C5—N1—H1 | 120.3 | C16—C15—H15 | 119.9 |
C6—N1—H1 | 115.6 | C15—C16—C17 | 119.79 (16) |
C7—N2—H2A | 114.9 | C15—C16—H16 | 120.1 |
C7—N2—H2B | 113.7 | C17—C16—H16 | 120.1 |
H2A—N2—H2B | 111.3 | C16—C17—C12 | 120.48 (16) |
C24—N3—C25 | 124.93 (13) | C16—C17—H17 | 119.8 |
C24—N3—H3 | 119.9 | C12—C17—H17 | 119.8 |
C25—N3—H3 | 115.2 | C19—C18—C23 | 119.01 (15) |
C26—N4—H4A | 112.0 | C19—C18—C3 | 121.86 (15) |
C26—N4—H4B | 112.6 | C23—C18—C3 | 119.11 (14) |
H4A—N4—H4B | 109.5 | C18—C19—C20 | 120.21 (16) |
C2—C1—C5 | 134.26 (14) | C18—C19—H19 | 119.9 |
C2—C1—S1 | 112.53 (12) | C20—C19—H19 | 119.9 |
C5—C1—S1 | 113.16 (11) | C21—C20—C19 | 120.58 (17) |
C1—C2—C3 | 111.71 (14) | C21—C20—H20 | 119.7 |
C1—C2—C12 | 124.44 (14) | C19—C20—H20 | 119.7 |
C3—C2—C12 | 123.63 (14) | C22—C21—C20 | 119.51 (17) |
C4—C3—C2 | 111.76 (14) | C22—C21—H21 | 120.2 |
C4—C3—C18 | 123.61 (14) | C20—C21—H21 | 120.2 |
C2—C3—C18 | 124.32 (14) | C21—C22—C23 | 120.36 (18) |
C3—C4—C24 | 133.19 (14) | C21—C22—H22 | 119.8 |
C3—C4—S1 | 112.44 (12) | C23—C22—H22 | 119.8 |
C24—C4—S1 | 114.22 (11) | C18—C23—C22 | 120.32 (17) |
O1—C5—N1 | 123.27 (15) | C18—C23—H23 | 119.8 |
O1—C5—C1 | 118.49 (14) | C22—C23—H23 | 119.8 |
N1—C5—C1 | 118.25 (14) | O2—C24—N3 | 123.20 (15) |
C11—C6—C7 | 120.89 (15) | O2—C24—C4 | 118.76 (14) |
C11—C6—N1 | 117.59 (15) | N3—C24—C4 | 118.02 (14) |
C7—C6—N1 | 121.37 (15) | C30—C25—C26 | 121.14 (15) |
N2—C7—C8 | 121.83 (15) | C30—C25—N3 | 116.87 (14) |
N2—C7—C6 | 120.62 (15) | C26—C25—N3 | 121.66 (15) |
C8—C7—C6 | 117.42 (15) | C25—C26—N4 | 121.71 (15) |
C9—C8—C7 | 121.12 (16) | C25—C26—C27 | 117.49 (16) |
C9—C8—H8 | 119.4 | N4—C26—C27 | 120.64 (15) |
C7—C8—H8 | 119.4 | C28—C27—C26 | 120.95 (16) |
C10—C9—C8 | 120.84 (17) | C28—C27—H27 | 119.5 |
C10—C9—H9 | 119.6 | C26—C27—H27 | 119.5 |
C8—C9—H9 | 119.6 | C29—C28—C27 | 120.68 (17) |
C9—C10—C11 | 118.92 (17) | C29—C28—H28 | 119.7 |
C9—C10—H10 | 120.5 | C27—C28—H28 | 119.7 |
C11—C10—H10 | 120.5 | C28—C29—C30 | 119.16 (17) |
C6—C11—C10 | 120.80 (16) | C28—C29—H29 | 120.4 |
C6—C11—H11 | 119.6 | C30—C29—H29 | 120.4 |
C10—C11—H11 | 119.6 | C25—C30—C29 | 120.52 (16) |
C13—C12—C17 | 118.89 (15) | C25—C30—H30 | 119.7 |
C13—C12—C2 | 119.39 (14) | C29—C30—H30 | 119.7 |
C17—C12—C2 | 121.72 (14) | N5—C31—C32 | 179.8 (3) |
C14—C13—C12 | 120.54 (16) | C31—C32—H32A | 109.5 |
C14—C13—H13 | 119.7 | C31—C32—H32B | 109.5 |
C12—C13—H13 | 119.7 | H32A—C32—H32B | 109.5 |
C15—C14—C13 | 120.11 (16) | C31—C32—H32C | 109.5 |
C15—C14—H14 | 119.9 | H32A—C32—H32C | 109.5 |
C13—C14—H14 | 119.9 | H32B—C32—H32C | 109.5 |
C4—S1—C1—C2 | −1.32 (13) | C17—C12—C13—C14 | 1.8 (2) |
C4—S1—C1—C5 | −179.05 (12) | C2—C12—C13—C14 | −177.74 (15) |
C5—C1—C2—C3 | 177.89 (16) | C12—C13—C14—C15 | −1.2 (3) |
S1—C1—C2—C3 | 0.80 (17) | C13—C14—C15—C16 | −0.3 (3) |
C5—C1—C2—C12 | 3.2 (3) | C14—C15—C16—C17 | 1.2 (3) |
S1—C1—C2—C12 | −173.88 (12) | C15—C16—C17—C12 | −0.6 (3) |
C1—C2—C3—C4 | 0.33 (19) | C13—C12—C17—C16 | −0.9 (2) |
C12—C2—C3—C4 | 175.06 (14) | C2—C12—C17—C16 | 178.63 (15) |
C1—C2—C3—C18 | −173.50 (14) | C4—C3—C18—C19 | 107.51 (19) |
C12—C2—C3—C18 | 1.2 (2) | C2—C3—C18—C19 | −79.4 (2) |
C2—C3—C4—C24 | −176.42 (16) | C4—C3—C18—C23 | −70.9 (2) |
C18—C3—C4—C24 | −2.5 (3) | C2—C3—C18—C23 | 102.24 (19) |
C2—C3—C4—S1 | −1.32 (17) | C23—C18—C19—C20 | −0.7 (3) |
C18—C3—C4—S1 | 172.56 (12) | C3—C18—C19—C20 | −179.11 (15) |
C1—S1—C4—C3 | 1.51 (13) | C18—C19—C20—C21 | 0.6 (3) |
C1—S1—C4—C24 | 177.59 (12) | C19—C20—C21—C22 | 0.0 (3) |
C6—N1—C5—O1 | 4.2 (3) | C20—C21—C22—C23 | −0.4 (3) |
C6—N1—C5—C1 | −175.83 (14) | C19—C18—C23—C22 | 0.3 (3) |
C2—C1—C5—O1 | −163.05 (17) | C3—C18—C23—C22 | 178.76 (16) |
S1—C1—C5—O1 | 14.02 (19) | C21—C22—C23—C18 | 0.2 (3) |
C2—C1—C5—N1 | 17.0 (3) | C25—N3—C24—O2 | −5.1 (3) |
S1—C1—C5—N1 | −165.92 (12) | C25—N3—C24—C4 | 176.44 (14) |
C5—N1—C6—C11 | 125.82 (17) | C3—C4—C24—O2 | 158.95 (17) |
C5—N1—C6—C7 | −58.5 (2) | S1—C4—C24—O2 | −16.1 (2) |
C11—C6—C7—N2 | 176.85 (15) | C3—C4—C24—N3 | −22.5 (3) |
N1—C6—C7—N2 | 1.3 (2) | S1—C4—C24—N3 | 162.48 (12) |
C11—C6—C7—C8 | 0.9 (2) | C24—N3—C25—C30 | −128.99 (17) |
N1—C6—C7—C8 | −174.68 (14) | C24—N3—C25—C26 | 57.6 (2) |
N2—C7—C8—C9 | −176.27 (16) | C30—C25—C26—N4 | −173.44 (15) |
C6—C7—C8—C9 | −0.4 (3) | N3—C25—C26—N4 | −0.3 (2) |
C7—C8—C9—C10 | −0.3 (3) | C30—C25—C26—C27 | 2.1 (2) |
C8—C9—C10—C11 | 0.4 (3) | N3—C25—C26—C27 | 175.29 (15) |
C7—C6—C11—C10 | −0.8 (3) | C25—C26—C27—C28 | −2.8 (3) |
N1—C6—C11—C10 | 174.92 (15) | N4—C26—C27—C28 | 172.85 (16) |
C9—C10—C11—C6 | 0.2 (3) | C26—C27—C28—C29 | 1.5 (3) |
C1—C2—C12—C13 | 59.9 (2) | C27—C28—C29—C30 | 0.5 (3) |
C3—C2—C12—C13 | −114.13 (18) | C26—C25—C30—C29 | −0.2 (3) |
C1—C2—C12—C17 | −119.63 (18) | N3—C25—C30—C29 | −173.68 (15) |
C3—C2—C12—C17 | 66.3 (2) | C28—C29—C30—C25 | −1.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···N4i | 0.91 | 2.43 | 3.124 (2) | 134 |
N2—H2A···O1 | 0.91 | 2.12 | 2.841 (2) | 135 |
N2—H2B···N5ii | 0.91 | 2.43 | 3.322 (2) | 165 |
N3—H3···N2i | 0.90 | 2.50 | 3.125 (2) | 127 |
N4—H4A···O2 | 0.91 | 2.08 | 2.860 (2) | 143 |
N4—H4B···O2iii | 0.91 | 2.35 | 3.108 (2) | 142 |
C32—H32A···O1 | 0.98 | 2.55 | 3.245 (2) | 128 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+1, −z+2; (iii) −x+1, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C30H24N4O2S·C2H3N |
Mr | 545.65 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 9.0314 (9), 11.5470 (11), 13.0140 (12) |
α, β, γ (°) | 93.206 (2), 92.504 (2), 90.017 (2) |
V (Å3) | 1353.7 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.16 |
Crystal size (mm) | 0.24 × 0.21 × 0.18 |
Data collection | |
Diffractometer | Bruker SMART 1K CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1998) |
Tmin, Tmax | 0.965, 0.972 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13964, 6491, 5153 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.662 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.122, 1.01 |
No. of reflections | 6491 |
No. of parameters | 362 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.40, −0.26 |
Computer programs: SMART (Bruker, 1998), SAINT-Plus (Bruker, 1998), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···N4i | 0.91 | 2.43 | 3.124 (2) | 134 |
N2—H2A···O1 | 0.91 | 2.12 | 2.841 (2) | 135 |
N2—H2B···N5ii | 0.91 | 2.43 | 3.322 (2) | 165 |
N3—H3···N2i | 0.90 | 2.50 | 3.125 (2) | 127 |
N4—H4A···O2 | 0.91 | 2.08 | 2.860 (2) | 143 |
N4—H4B···O2iii | 0.91 | 2.35 | 3.108 (2) | 142 |
C32—H32A···O1 | 0.98 | 2.55 | 3.245 (2) | 128 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y+1, −z+2; (iii) −x+1, −y+2, −z+1. |
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Aromatic diamide diamines are useful precursors for the construction of larger molecules which are used in host-guest chemistry (Schneider &Yatsimirsky, 2008). Such diamines can bind neutral or anionic species using hydrogen bonds. We and others have reported several approaches for the synthesis of such type of diamines (Picard et al., 2001; Sessler et al., 2005a, 2005b; Katayev et al., 2007). In this work we present the synthesis and crystal structure of a diamine used by us recently to prepare anion selective receptors (Sessler et al., 2005a; Askerov et al., 2010).
The synthesis consists of the conversion of dicarboxylic acid into the corresponding chloride followed by coupling with 2-mercaptothiazoline (Fig. 1). The activated acid was transformed into (I) by the reaction with 1,2-phenylenediamine.
(I) crystallizes as a solvate with an acetonitrile molecule. The molecule possesses approximate Cs(m) intrinsic symmetry, with the mirror plane passing through the sulfur atom and the middle of the (Ph)C—C(Ph) bond (Fig. 2). Despite the main backbone of (I) being a long chain of conjugated bonds (CAr—N(H)—C(O)—C═C—C(O)—N(H)—CAr), it adopts a non-planar conformation due to the presence of various intra- and intermolecular hydrogen bonding interactions (Table 1). These hydrogen bonds result in twist configurations for both the amido and aminophenyl fragments relative to the central thiophene ring. The dihedral angles between the O1═C5—N1—H1 and O2═ C24—N3—H3 amido planes and the S1—C1—C2—C3—C4 thiophene ring plane are 16.08 (8) and 19.30 (11)°, respectively, while that between the N2—C7—C8—C9—C10—C11—C6 and N4—C26—C27—C28—C29—C30—C25 aminophenyl planes and the S1—C1—C2—C3—C4 thiophene ring plane are 39.16 (5) and 33.43 (6)°, respectively. The dihedral angles between the planes of the C12—C13—C14—C15—C16—C17 and C18—C19—C20—C21—C22—C23 phenyl substituents and the S1—C1—C2—C3—C4 thiophene ring plane are 62.55 (6) and 74.62 (5)°, respectively.
There are two intramolecular Namine—H···O hydrogen bonds in (I) closing the O1—C5—N1—C6—C7—N2—H2A and O2—C24—N3—C25—C26—N4—H4A seven-membered rings (Table 1, Fig. 2). In the crystal, the molecules form centrosymmetrical dimers through four N1—H1···N4i and N3—H3···N2i hydrogen bonds (Table 1, Fig. 3). The dimers are further linked into layers parallel to (100) both directly (via N4—H4B···O2iii hydrogen bonds, Table 1) and through the solvate acetonitrile molecules (via N2—H2B···N5ii and C32—H32A···O1 hydrogen bonds, Table 1) (Fig. 4).