organic compounds
Ethyl 2-(2-acetoxybenzylidene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5H-1,3-thiazolo[3,2-a]pyrimidine-6-carboxylate†
aDepartment of Physics, Bhavan's Sheth R.A. College of Science, Ahmedabad, Gujarat 380 001, India, bDepartment of Chemistry, M.G. Science Institute, Navrangpura, Ahmedabad, Gujarat 380 009, India, and cDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
In the title molecule, C25H22N2O5S, the atoms of the thiazolopyrimidine ring system, with the exception of the phenyl-bearing C atom [deviation = 0.177 (2) Å], are essentially planar [r.m.s deviation = 0.100 (2) °] and the mean plane of these atoms forms dihedral angles of 89.86 (10) and 7.97 (8)° with the phenyl and benzene rings, respectively. In the crystal, co-operative C—H⋯O and C—H⋯π interactions lead to a supramolecular chain along the a axis. These chains are connected via π–π interactions [centroid–centroid = 3.7523 (13) Å].
Related literature
For background to the pharmacological activity of thiazolo[3,2-a]pyrimidine derivatives, see: Winter et al. (1962); Atwal et al. (1990); Kappe (2000); Adams et al. (2005). For related structures, see: Jotani & Baldaniya (2007, 2008); Baldaniya & Jotani (2008); Jotani et al. (2009). For additional geometric analysis, see: Cremer & Pople (1975). Semi-empirical Quantum Chemical Calculations were performed with the MOPAC2009 program (Stewart, 2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536810007853/lh5004sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810007853/lh5004Isup2.hkl
A mixture of ethyl 6-methyl-4-phenyl-2-thioxo-1,2,3,4-tetrahydropyrimidine-5-carboxylate (0.01 mol), chloroacetic acid (0.01 mol), fused sodium acetate (6 g) in glacial acetic acid (25 ml), acetic anhydride (10 ml), and 2-acetyloxy benzaldehyde (0.01 mol) was refluxed for 3 to 3.5 h. The reaction mixture was cooled and poured into cold water. The resulting solid was collected and crystallized from methanol to obtain the final product (75 % yield, m.pt. 438 K). The compound was crystallized by slow evaporation of benzene-ethanol (1:1) solution yielding yellow blocks.
The C-bound H atoms were geometrically placed (C–H = 0.93–0.98 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(parent atom).
Data collection: APEX2 (Bruker, 2004); cell
APEX2 andSAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C25H22N2O5S | Z = 2 |
Mr = 462.51 | F(000) = 484 |
Triclinic, P1 | Dx = 1.359 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.4236 (3) Å | Cell parameters from 5176 reflections |
b = 9.6807 (3) Å | θ = 2.2–31.3° |
c = 14.3345 (5) Å | µ = 0.18 mm−1 |
α = 87.939 (2)° | T = 293 K |
β = 89.680 (2)° | Block, yellow |
γ = 75.287 (2)° | 0.47 × 0.35 × 0.20 mm |
V = 1129.86 (7) Å3 |
Bruker SMART APEX CCD diffractometer | 3969 independent reflections |
Radiation source: fine-focus sealed tube | 3438 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ω and ϕ scans | θmax = 25.0°, θmin = 1.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→10 |
Tmin = 0.920, Tmax = 0.965 | k = −11→11 |
20701 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.137 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0721P)2 + 0.4966P] where P = (Fo2 + 2Fc2)/3 |
3969 reflections | (Δ/σ)max = 0.002 |
301 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C25H22N2O5S | γ = 75.287 (2)° |
Mr = 462.51 | V = 1129.86 (7) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.4236 (3) Å | Mo Kα radiation |
b = 9.6807 (3) Å | µ = 0.18 mm−1 |
c = 14.3345 (5) Å | T = 293 K |
α = 87.939 (2)° | 0.47 × 0.35 × 0.20 mm |
β = 89.680 (2)° |
Bruker SMART APEX CCD diffractometer | 3969 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3438 reflections with I > 2σ(I) |
Tmin = 0.920, Tmax = 0.965 | Rint = 0.024 |
20701 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.137 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.36 e Å−3 |
3969 reflections | Δρmin = −0.31 e Å−3 |
301 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.19582 (7) | 0.35035 (6) | 0.10853 (4) | 0.0550 (2) | |
O1 | 0.8697 (2) | 0.4977 (2) | 0.28339 (16) | 0.0886 (6) | |
O2 | 0.87965 (18) | 0.27940 (18) | 0.33559 (11) | 0.0604 (4) | |
O3 | 0.44199 (18) | 0.03161 (15) | 0.25695 (11) | 0.0563 (4) | |
O4 | −0.00662 (19) | −0.14186 (16) | 0.17321 (11) | 0.0590 (4) | |
O5 | −0.1285 (3) | −0.0711 (3) | 0.30616 (14) | 0.1097 (9) | |
N1 | 0.4187 (2) | 0.4897 (2) | 0.14656 (13) | 0.0568 (5) | |
N2 | 0.45080 (18) | 0.25926 (16) | 0.21508 (10) | 0.0387 (4) | |
C1 | 0.3732 (2) | 0.3754 (2) | 0.16117 (13) | 0.0447 (5) | |
C2 | 0.5865 (2) | 0.2654 (2) | 0.27852 (12) | 0.0383 (4) | |
H2 | 0.6743 | 0.1775 | 0.2736 | 0.046* | |
C3 | 0.6520 (2) | 0.3922 (2) | 0.24663 (13) | 0.0433 (4) | |
C4 | 0.5692 (3) | 0.4949 (2) | 0.18730 (15) | 0.0524 (5) | |
C5 | 0.5251 (2) | 0.2766 (2) | 0.37843 (12) | 0.0377 (4) | |
C6 | 0.4075 (3) | 0.3956 (2) | 0.40504 (15) | 0.0496 (5) | |
H6 | 0.3675 | 0.4700 | 0.3618 | 0.060* | |
C7 | 0.3486 (3) | 0.4053 (3) | 0.49501 (17) | 0.0640 (6) | |
H7 | 0.2689 | 0.4858 | 0.5121 | 0.077* | |
C8 | 0.4071 (3) | 0.2968 (3) | 0.55903 (16) | 0.0664 (7) | |
H8 | 0.3666 | 0.3029 | 0.6196 | 0.080* | |
C9 | 0.5252 (4) | 0.1794 (3) | 0.53393 (16) | 0.0690 (7) | |
H9 | 0.5663 | 0.1062 | 0.5779 | 0.083* | |
C10 | 0.5843 (3) | 0.1683 (2) | 0.44344 (15) | 0.0552 (5) | |
H10 | 0.6640 | 0.0875 | 0.4267 | 0.066* | |
C11 | 0.8095 (3) | 0.3985 (2) | 0.28807 (14) | 0.0492 (5) | |
C12 | 1.0308 (3) | 0.2780 (3) | 0.38364 (18) | 0.0651 (6) | |
H12A | 1.1119 | 0.2944 | 0.3392 | 0.078* | |
H12B | 1.0113 | 0.3533 | 0.4284 | 0.078* | |
C13 | 1.0905 (4) | 0.1404 (4) | 0.4313 (3) | 0.1057 (12) | |
H13A | 1.0139 | 0.1285 | 0.4789 | 0.158* | |
H13B | 1.1952 | 0.1352 | 0.4593 | 0.158* | |
H13C | 1.1019 | 0.0661 | 0.3872 | 0.158* | |
C14 | 0.6204 (4) | 0.6257 (3) | 0.1538 (2) | 0.0819 (9) | |
H14A | 0.7278 | 0.6218 | 0.1777 | 0.123* | |
H14B | 0.5436 | 0.7094 | 0.1755 | 0.123* | |
H14C | 0.6227 | 0.6296 | 0.0868 | 0.123* | |
C15 | 0.3839 (2) | 0.1429 (2) | 0.21508 (13) | 0.0409 (4) | |
C16 | 0.2306 (2) | 0.1780 (2) | 0.15845 (12) | 0.0417 (4) | |
C17 | 0.1391 (2) | 0.0840 (2) | 0.15492 (13) | 0.0445 (4) | |
H17 | 0.1848 | −0.0036 | 0.1852 | 0.053* | |
C18 | −0.0194 (2) | 0.0952 (2) | 0.11188 (13) | 0.0437 (4) | |
C19 | −0.0947 (2) | −0.0168 (2) | 0.12602 (14) | 0.0463 (5) | |
C20 | −0.2463 (3) | −0.0123 (3) | 0.08936 (16) | 0.0563 (5) | |
H20 | −0.2943 | −0.0877 | 0.1009 | 0.068* | |
C21 | −0.3265 (3) | 0.1051 (3) | 0.03518 (16) | 0.0563 (6) | |
H21 | −0.4290 | 0.1089 | 0.0099 | 0.068* | |
C22 | −0.2554 (3) | 0.2161 (3) | 0.01856 (15) | 0.0555 (5) | |
H22 | −0.3092 | 0.2948 | −0.0184 | 0.067* | |
C23 | −0.1045 (3) | 0.2112 (2) | 0.05660 (15) | 0.0516 (5) | |
H23 | −0.0580 | 0.2876 | 0.0450 | 0.062* | |
C24 | −0.0289 (3) | −0.1560 (3) | 0.26542 (18) | 0.0612 (6) | |
C25 | 0.0891 (4) | −0.2840 (3) | 0.3062 (2) | 0.0810 (8) | |
H25A | 0.1858 | −0.2582 | 0.3265 | 0.122* | |
H25B | 0.1185 | −0.3553 | 0.2599 | 0.122* | |
H25C | 0.0396 | −0.3214 | 0.3585 | 0.122* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0523 (3) | 0.0583 (4) | 0.0560 (3) | −0.0191 (3) | −0.0217 (2) | 0.0164 (3) |
O1 | 0.0699 (12) | 0.0833 (13) | 0.1248 (17) | −0.0447 (11) | −0.0285 (11) | 0.0212 (12) |
O2 | 0.0430 (8) | 0.0730 (11) | 0.0683 (10) | −0.0222 (7) | −0.0161 (7) | 0.0111 (8) |
O3 | 0.0549 (9) | 0.0473 (8) | 0.0666 (10) | −0.0140 (7) | −0.0186 (7) | 0.0120 (7) |
O4 | 0.0563 (9) | 0.0499 (9) | 0.0684 (10) | −0.0095 (7) | −0.0008 (7) | −0.0001 (7) |
O5 | 0.1234 (19) | 0.1067 (17) | 0.0643 (12) | 0.0321 (15) | 0.0107 (12) | 0.0131 (11) |
N1 | 0.0579 (11) | 0.0560 (11) | 0.0592 (11) | −0.0222 (9) | −0.0177 (9) | 0.0186 (9) |
N2 | 0.0374 (8) | 0.0434 (9) | 0.0353 (8) | −0.0103 (7) | −0.0055 (6) | 0.0019 (6) |
C1 | 0.0444 (11) | 0.0503 (11) | 0.0394 (10) | −0.0129 (9) | −0.0074 (8) | 0.0067 (8) |
C2 | 0.0333 (9) | 0.0426 (10) | 0.0384 (9) | −0.0083 (7) | −0.0053 (7) | 0.0013 (8) |
C3 | 0.0408 (10) | 0.0516 (11) | 0.0400 (10) | −0.0163 (9) | 0.0025 (8) | −0.0018 (8) |
C4 | 0.0555 (12) | 0.0577 (13) | 0.0483 (11) | −0.0237 (10) | −0.0045 (9) | 0.0095 (9) |
C5 | 0.0342 (9) | 0.0437 (10) | 0.0373 (9) | −0.0139 (8) | −0.0059 (7) | 0.0011 (8) |
C6 | 0.0470 (11) | 0.0524 (12) | 0.0470 (11) | −0.0083 (9) | −0.0027 (9) | −0.0003 (9) |
C7 | 0.0581 (14) | 0.0772 (16) | 0.0566 (14) | −0.0151 (12) | 0.0098 (11) | −0.0174 (12) |
C8 | 0.0754 (16) | 0.0904 (19) | 0.0425 (12) | −0.0371 (15) | 0.0078 (11) | −0.0091 (12) |
C9 | 0.0877 (18) | 0.0779 (17) | 0.0437 (12) | −0.0279 (15) | −0.0091 (12) | 0.0177 (11) |
C10 | 0.0588 (13) | 0.0547 (13) | 0.0485 (12) | −0.0088 (10) | −0.0059 (10) | 0.0078 (10) |
C11 | 0.0420 (11) | 0.0611 (13) | 0.0471 (11) | −0.0179 (10) | 0.0036 (9) | −0.0022 (10) |
C12 | 0.0417 (12) | 0.0902 (18) | 0.0647 (15) | −0.0188 (12) | −0.0125 (10) | −0.0020 (13) |
C13 | 0.088 (2) | 0.102 (2) | 0.128 (3) | −0.0310 (19) | −0.055 (2) | 0.030 (2) |
C14 | 0.092 (2) | 0.0854 (19) | 0.0819 (18) | −0.0525 (17) | −0.0265 (15) | 0.0380 (15) |
C15 | 0.0426 (10) | 0.0446 (11) | 0.0357 (9) | −0.0116 (8) | −0.0018 (8) | −0.0004 (8) |
C16 | 0.0420 (10) | 0.0487 (11) | 0.0336 (9) | −0.0100 (8) | −0.0038 (7) | −0.0010 (8) |
C17 | 0.0452 (11) | 0.0487 (11) | 0.0399 (10) | −0.0125 (9) | −0.0057 (8) | 0.0006 (8) |
C18 | 0.0439 (10) | 0.0515 (11) | 0.0365 (9) | −0.0129 (9) | −0.0018 (8) | −0.0051 (8) |
C19 | 0.0461 (11) | 0.0487 (11) | 0.0443 (11) | −0.0118 (9) | −0.0001 (8) | −0.0040 (9) |
C20 | 0.0498 (12) | 0.0614 (14) | 0.0629 (13) | −0.0231 (10) | −0.0017 (10) | −0.0055 (11) |
C21 | 0.0424 (11) | 0.0719 (15) | 0.0565 (13) | −0.0172 (10) | −0.0071 (9) | −0.0070 (11) |
C22 | 0.0530 (12) | 0.0635 (14) | 0.0487 (12) | −0.0126 (11) | −0.0120 (9) | 0.0030 (10) |
C23 | 0.0533 (12) | 0.0564 (12) | 0.0483 (11) | −0.0205 (10) | −0.0099 (9) | 0.0038 (9) |
C24 | 0.0591 (14) | 0.0552 (14) | 0.0684 (15) | −0.0133 (11) | −0.0091 (12) | 0.0029 (11) |
C25 | 0.0785 (18) | 0.0565 (15) | 0.105 (2) | −0.0147 (13) | −0.0237 (16) | 0.0202 (14) |
S1—C16 | 1.747 (2) | C9—H9 | 0.9300 |
S1—C1 | 1.752 (2) | C10—H10 | 0.9300 |
O1—C11 | 1.194 (3) | C12—C13 | 1.447 (4) |
O2—C11 | 1.321 (3) | C12—H12A | 0.9700 |
O2—C12 | 1.448 (3) | C12—H12B | 0.9700 |
O3—C15 | 1.204 (2) | C13—H13A | 0.9600 |
O4—C24 | 1.341 (3) | C13—H13B | 0.9600 |
O4—C19 | 1.402 (2) | C13—H13C | 0.9600 |
O5—C24 | 1.183 (3) | C14—H14A | 0.9600 |
N1—C1 | 1.270 (3) | C14—H14B | 0.9600 |
N1—C4 | 1.412 (3) | C14—H14C | 0.9600 |
N2—C1 | 1.363 (2) | C15—C16 | 1.487 (3) |
N2—C15 | 1.382 (2) | C16—C17 | 1.336 (3) |
N2—C2 | 1.479 (2) | C17—C18 | 1.451 (3) |
C2—C5 | 1.518 (2) | C17—H17 | 0.9300 |
C2—C3 | 1.523 (3) | C18—C23 | 1.391 (3) |
C2—H2 | 0.9800 | C18—C19 | 1.397 (3) |
C3—C4 | 1.339 (3) | C19—C20 | 1.373 (3) |
C3—C11 | 1.473 (3) | C20—C21 | 1.380 (3) |
C4—C14 | 1.501 (3) | C20—H20 | 0.9300 |
C5—C10 | 1.373 (3) | C21—C22 | 1.370 (3) |
C5—C6 | 1.379 (3) | C21—H21 | 0.9300 |
C6—C7 | 1.377 (3) | C22—C23 | 1.375 (3) |
C6—H6 | 0.9300 | C22—H22 | 0.9300 |
C7—C8 | 1.364 (4) | C23—H23 | 0.9300 |
C7—H7 | 0.9300 | C24—C25 | 1.481 (3) |
C8—C9 | 1.365 (4) | C25—H25A | 0.9600 |
C8—H8 | 0.9300 | C25—H25B | 0.9600 |
C9—C10 | 1.385 (3) | C25—H25C | 0.9600 |
C16—S1—C1 | 91.39 (9) | C12—C13—H13A | 109.5 |
C11—O2—C12 | 116.05 (18) | C12—C13—H13B | 109.5 |
C24—O4—C19 | 118.48 (17) | H13A—C13—H13B | 109.5 |
C1—N1—C4 | 116.62 (18) | C12—C13—H13C | 109.5 |
C1—N2—C15 | 116.40 (16) | H13A—C13—H13C | 109.5 |
C1—N2—C2 | 121.05 (16) | H13B—C13—H13C | 109.5 |
C15—N2—C2 | 122.13 (15) | C4—C14—H14A | 109.5 |
N1—C1—N2 | 126.93 (18) | C4—C14—H14B | 109.5 |
N1—C1—S1 | 121.26 (15) | H14A—C14—H14B | 109.5 |
N2—C1—S1 | 111.80 (14) | C4—C14—H14C | 109.5 |
N2—C2—C5 | 109.63 (14) | H14A—C14—H14C | 109.5 |
N2—C2—C3 | 107.89 (15) | H14B—C14—H14C | 109.5 |
C5—C2—C3 | 112.53 (15) | O3—C15—N2 | 123.80 (17) |
N2—C2—H2 | 108.9 | O3—C15—C16 | 126.21 (18) |
C5—C2—H2 | 108.9 | N2—C15—C16 | 109.98 (16) |
C3—C2—H2 | 108.9 | C17—C16—C15 | 119.85 (18) |
C4—C3—C11 | 121.68 (19) | C17—C16—S1 | 129.76 (16) |
C4—C3—C2 | 122.34 (18) | C15—C16—S1 | 110.33 (14) |
C11—C3—C2 | 115.93 (17) | C16—C17—C18 | 130.97 (19) |
C3—C4—N1 | 122.26 (19) | C16—C17—H17 | 114.5 |
C3—C4—C14 | 126.5 (2) | C18—C17—H17 | 114.5 |
N1—C4—C14 | 111.25 (19) | C23—C18—C19 | 116.47 (18) |
C10—C5—C6 | 118.94 (18) | C23—C18—C17 | 124.65 (19) |
C10—C5—C2 | 120.72 (17) | C19—C18—C17 | 118.87 (18) |
C6—C5—C2 | 120.33 (17) | C20—C19—C18 | 122.2 (2) |
C7—C6—C5 | 120.7 (2) | C20—C19—O4 | 119.12 (19) |
C7—C6—H6 | 119.6 | C18—C19—O4 | 118.50 (18) |
C5—C6—H6 | 119.6 | C19—C20—C21 | 119.4 (2) |
C8—C7—C6 | 120.0 (2) | C19—C20—H20 | 120.3 |
C8—C7—H7 | 120.0 | C21—C20—H20 | 120.3 |
C6—C7—H7 | 120.0 | C22—C21—C20 | 120.1 (2) |
C7—C8—C9 | 119.8 (2) | C22—C21—H21 | 119.9 |
C7—C8—H8 | 120.1 | C20—C21—H21 | 119.9 |
C9—C8—H8 | 120.1 | C21—C22—C23 | 120.0 (2) |
C8—C9—C10 | 120.5 (2) | C21—C22—H22 | 120.0 |
C8—C9—H9 | 119.8 | C23—C22—H22 | 120.0 |
C10—C9—H9 | 119.8 | C22—C23—C18 | 121.9 (2) |
C5—C10—C9 | 120.0 (2) | C22—C23—H23 | 119.1 |
C5—C10—H10 | 120.0 | C18—C23—H23 | 119.1 |
C9—C10—H10 | 120.0 | O5—C24—O4 | 121.8 (2) |
O1—C11—O2 | 121.8 (2) | O5—C24—C25 | 126.7 (3) |
O1—C11—C3 | 126.4 (2) | O4—C24—C25 | 111.4 (2) |
O2—C11—C3 | 111.81 (18) | C24—C25—H25A | 109.5 |
C13—C12—O2 | 108.6 (2) | C24—C25—H25B | 109.5 |
C13—C12—H12A | 110.0 | H25A—C25—H25B | 109.5 |
O2—C12—H12A | 110.0 | C24—C25—H25C | 109.5 |
C13—C12—H12B | 110.0 | H25A—C25—H25C | 109.5 |
O2—C12—H12B | 110.0 | H25B—C25—H25C | 109.5 |
H12A—C12—H12B | 108.4 | ||
C4—N1—C1—N2 | 2.8 (3) | C12—O2—C11—C3 | −176.56 (17) |
C4—N1—C1—S1 | −175.81 (16) | C4—C3—C11—O1 | 9.3 (4) |
C15—N2—C1—N1 | −175.5 (2) | C2—C3—C11—O1 | −168.3 (2) |
C2—N2—C1—N1 | 11.7 (3) | C4—C3—C11—O2 | −172.59 (19) |
C15—N2—C1—S1 | 3.2 (2) | C2—C3—C11—O2 | 9.8 (2) |
C2—N2—C1—S1 | −169.56 (13) | C11—O2—C12—C13 | −179.7 (2) |
C16—S1—C1—N1 | 177.52 (19) | C1—N2—C15—O3 | 177.60 (18) |
C16—S1—C1—N2 | −1.30 (15) | C2—N2—C15—O3 | −9.7 (3) |
C1—N2—C2—C5 | 103.91 (19) | C1—N2—C15—C16 | −3.7 (2) |
C15—N2—C2—C5 | −68.5 (2) | C2—N2—C15—C16 | 168.97 (15) |
C1—N2—C2—C3 | −18.9 (2) | O3—C15—C16—C17 | 3.7 (3) |
C15—N2—C2—C3 | 168.69 (16) | N2—C15—C16—C17 | −174.93 (17) |
N2—C2—C3—C4 | 15.1 (3) | O3—C15—C16—S1 | −178.82 (17) |
C5—C2—C3—C4 | −106.0 (2) | N2—C15—C16—S1 | 2.55 (19) |
N2—C2—C3—C11 | −167.40 (15) | C1—S1—C16—C17 | 176.4 (2) |
C5—C2—C3—C11 | 71.5 (2) | C1—S1—C16—C15 | −0.73 (14) |
C11—C3—C4—N1 | 179.53 (19) | C15—C16—C17—C18 | 174.58 (18) |
C2—C3—C4—N1 | −3.1 (3) | S1—C16—C17—C18 | −2.3 (3) |
C11—C3—C4—C14 | 0.7 (4) | C16—C17—C18—C23 | 5.5 (3) |
C2—C3—C4—C14 | 178.1 (2) | C16—C17—C18—C19 | −174.4 (2) |
C1—N1—C4—C3 | −7.1 (3) | C23—C18—C19—C20 | −1.4 (3) |
C1—N1—C4—C14 | 171.9 (2) | C17—C18—C19—C20 | 178.47 (19) |
N2—C2—C5—C10 | 114.6 (2) | C23—C18—C19—O4 | 173.64 (17) |
C3—C2—C5—C10 | −125.3 (2) | C17—C18—C19—O4 | −6.5 (3) |
N2—C2—C5—C6 | −64.7 (2) | C24—O4—C19—C20 | −89.8 (2) |
C3—C2—C5—C6 | 55.3 (2) | C24—O4—C19—C18 | 94.9 (2) |
C10—C5—C6—C7 | −0.7 (3) | C18—C19—C20—C21 | 1.3 (3) |
C2—C5—C6—C7 | 178.63 (19) | O4—C19—C20—C21 | −173.78 (19) |
C5—C6—C7—C8 | 0.3 (4) | C19—C20—C21—C22 | −0.2 (3) |
C6—C7—C8—C9 | 0.6 (4) | C20—C21—C22—C23 | −0.6 (3) |
C7—C8—C9—C10 | −1.1 (4) | C21—C22—C23—C18 | 0.4 (3) |
C6—C5—C10—C9 | 0.3 (3) | C19—C18—C23—C22 | 0.6 (3) |
C2—C5—C10—C9 | −179.1 (2) | C17—C18—C23—C22 | −179.28 (19) |
C8—C9—C10—C5 | 0.6 (4) | C19—O4—C24—O5 | 5.5 (4) |
C12—O2—C11—O1 | 1.7 (3) | C19—O4—C24—C25 | −172.2 (2) |
Cg1 is the centroid of the S1/C1/N2/C15/C16 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O5i | 0.98 | 2.58 | 3.532 (3) | 163 |
C12—H12a···Cg1i | 0.97 | 2.98 | 3.902 (3) | 160 |
Symmetry code: (i) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C25H22N2O5S |
Mr | 462.51 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 8.4236 (3), 9.6807 (3), 14.3345 (5) |
α, β, γ (°) | 87.939 (2), 89.680 (2), 75.287 (2) |
V (Å3) | 1129.86 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.18 |
Crystal size (mm) | 0.47 × 0.35 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.920, 0.965 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20701, 3969, 3438 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.137, 1.06 |
No. of reflections | 3969 |
No. of parameters | 301 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.36, −0.31 |
Computer programs: APEX2 (Bruker, 2004), APEX2 andSAINT (Bruker, 2004), SAINT and XPREP (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
Cg1 is the centroid of the S1/C1/N2/C15/C16 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O5i | 0.98 | 2.58 | 3.532 (3) | 163 |
C12—H12a···Cg1i | 0.97 | 2.98 | 3.902 (3) | 160 |
Symmetry code: (i) x+1, y, z. |
Footnotes
†Additional correspondence author, e-mail: mmjotani@rediffmail.com.
Acknowledgements
The authors thank the Department of Science and Technology (DST) and the SAIF, IIT Madras, Chennai, India, for the X-ray data collection. MMJ is grateful to the University Grant Commission (Western Regional Office), India, for Minor Research Project F. No.47-254/07.
References
Adams, S., Robins, F.-M., Chen, D., Wagag, D., Holbeck, S. L., Morse, H. C., Stroncek, D. & Marincola, F. M. (2005). J. Trans Med. 3. doi:10.1186/1479-5876-3-11. CrossRef Google Scholar
Atwal, K. S., Rovnyak, G. C., Kimbali, S. D., Floyd, D. M., Moorland, S., Swanson, B. N., Gougoutas, G. Z., Schwartz, J., Smillie, K. M. & Malley, M. F. (1990). J. Med. Chem. 33, 2629–2635. CSD CrossRef CAS PubMed Web of Science Google Scholar
Baldaniya, B. B. & Jotani, M. M. (2008). Anal Sci. X-ray Struct. Anal. Online, 24, x217–x218. CSD CrossRef CAS Google Scholar
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2004). APEX2, SAINT and XPREP. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Jotani, M. M. & Baldaniya, B. B. (2007). Acta Cryst. E63, o1937–o1939. Web of Science CSD CrossRef IUCr Journals Google Scholar
Jotani, M. M. & Baldaniya, B. B. (2008). Acta Cryst. E64, o739. Web of Science CSD CrossRef IUCr Journals Google Scholar
Jotani, M. M., Baldaniya, B. B. & Jasinski, J. P. (2009). J. Chem. Crystallogr. 39, 898—901. Web of Science CSD CrossRef Google Scholar
Kappe, C. O. (2000). Eur. J. Med. Chem. 35, 1043–1052. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Goöttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Stewart, J. P. (2009). MOPAC2009. Stewart Computational Chemistry. Available from http://OpenMOPAC.net. Google Scholar
Westrip, S. P. (2010). publCIF. In preparation. Google Scholar
Winter, C. A., Risley, E. A. & Nuss, G. W. (1962). Proc. Soc. Exp. Biol. Med. 111, 544–547. CrossRef PubMed CAS Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The absolute stereochemistry at C2 stereocentre in fused dihydropyrimidine rings is a critical factor for their biological activity and provides an additional opportunity to study the effect of chirality on biological activities (Atwal et al., 1990; Kappe, 2000). The title compound, (I), exhibits anti-cancer (Adams et al., 2005) and anti-inflammatory activities (Winter et al., 1962). In continuation of our structural studies of these pharmacologically interesting thiazolo[3,2-a]pyrimidine derivatives, designed to ascertain the influence of substitution patterns upon crystal packing (Jotani & Baldaniya, 2007; Jotani & Baldaniya, 2008; Baldaniya & Jotani, 2008; Jotani et al., 2009), the synthesis and crystal structure of the title compound, (I), is described herein.
The thiazole ring is essentially planar [maximum deviation of 0.0181 (17) for the N2 atom]. By contrast, the pyrimidine ring is non-planar with the sp 3-C2 atom lying well out of the approximate plane defined by the remaining atoms. The distortion is quantified by the ring puckering parameters (Cremer & Pople, 1975): Q = 0.1721 (19) Å, θ = 67.8 (7) °, and ϕ2 = 164.3 (7) °. The dihedral angle formed between the fused rings is nevertheless small at 6.05 (9) °. The planarity in the molecule extends to the C3-bound acetyl group [the C4–C3–C11–O1 torsion angle is 9.3 (4) °] on one side of the fused-ring system, and on the other through the C16═C17 double bond [1.336 (3) Å] and adjacent benzene ring as seen in the C15–C16–C17–C18 and C16–C17–C18–C19 torsion angles of 174.58 (18) and -174.4 (2) °, respectively. Each of the remaining substituents, i.e. the C5–C10 benzene ring and O4-acetyl groups lie to the same side of the molecule and occupy positions defined by the N2–C2–C5–C6 and C18–C19–O4–C24 torsion angles of -64.7 (2) and 94.9 (2) °, respectively. Allowing for the presence of distinct substituents, the molecular framework in (I) resembles closely those found in related derivatives (Jotani & Baldaniya, 2007; Jotani & Baldaniya, 2008; Baldaniya & Jotani, 2008; Jotani et al., 2009)
The crystal structure is stabilised by a variety of weak intermolecular interactions. A supramolecular chain aligned along the a axis is formed through the agency of C–H···O and C–H···π interactions, Fig. 2 and Table 1. These are connected via π–π interactions formed between centrosymmetrically related C18–C23 rings [ring centroid(C18–C23)···ring centroid(C18–C23)i = 3.7523 (13) Å for i: -x, -y, -z], Fig. 3.
Semi-empirical Quantum Chemical Calculations were performed with the MOPAC2009 program (Stewart, 2009) in order to optimize the experimental structure with the Austin Model 1 (AM1) approximation together with the restricted Hartree-Fock closed-shell wavefunction; minimisations were terminated at a r.m.s. gradient of less than 1.0 kJ mol-1 Å-1. The heat of formation was calculated to be -313.14 kJ mol-1. The ionization potential, dipole moment and self consistency field (SCF) factor were calculated as 8.633 eV, 3.880 Debye, and 121, respectively.