organic compounds
Ethyl 1-sec-butyl-2-phenyl-1H-benzimidazole-5-carboxylate
aSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bKulliyyah of Science, International Islamic University Malaysia (IIUM), Jalan Istana, Bandar Indera Mahkota, 25200 Kuantan, Pahang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title molecule, C20H22N2O2, the benzimidazole ring system is essentially planar, with a maximum deviation of 0.024 (1) Å. The dihedral angle between the phenyl and benzimidazole ring system is 43.71 (5)°. The atoms of the butyl group are disordered over two sets of sites with occupancies of 0.900 (4) and 0.100 (4). In the molecules are connected by weak intermolecular C—H⋯O hydrogen bonds, forming chains along the b axis. The is further stabilized by C—H⋯π interactions.
Related literature
For background to the applications of benzimidazole compounds, see: Spasov et al. (1999); Grassmann et al. (2002); Evans et al. (1997); White et al. (2004); Demirayak et al. (2002). For details of hydrogen bonding, see: Jeffrey & Saenger (1991); Jeffrey (1997); Scheiner (1997). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S160053681000872X/lh5008sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681000872X/lh5008Isup2.hkl
A solution of ethyl-3-amino-4-(sec-butylamino) benzoate (200 mg, 0.84 mmol) and sodium bisulfite adduct of benzaldehyde (353 mg, 1.68 mmol) in DMF was treated under microwave conditions at 130°C for 2 minutes. The reaction mixture was then diluted in EtOAc (20 mL) and washed with H2O (20 mL). The organic layer was collected and dried over Na2SO4. The solvent was removed under reduced pressure to afford the crude product, which upon recrystallisation from EtOAc, revealed the title compound as colourless crystals.
All hydrogen atoms were positioned geometrically [C–H = 0.93 or 0.97Å] and were refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating group model was applied to the methyl groups. The butyl group is disordered over two sites with refined occupancies of 0.900 (4) and 0.100 (4).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C20H22N2O2 | F(000) = 688 |
Mr = 322.40 | Dx = 1.247 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3770 reflections |
a = 9.9926 (7) Å | θ = 2.9–32.2° |
b = 12.3287 (11) Å | µ = 0.08 mm−1 |
c = 13.9635 (12) Å | T = 100 K |
β = 93.120 (3)° | Block, colourless |
V = 1717.7 (2) Å3 | 0.36 × 0.17 × 0.16 mm |
Z = 4 |
Bruker APEX DUO CCD area-detector diffractometer | 6168 independent reflections |
Radiation source: fine-focus sealed tube | 4186 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.055 |
ϕ and ω scans | θmax = 32.5°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −15→14 |
Tmin = 0.972, Tmax = 0.987 | k = −17→18 |
22823 measured reflections | l = −21→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.168 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0891P)2 + 0.1439P] where P = (Fo2 + 2Fc2)/3 |
6168 reflections | (Δ/σ)max = 0.001 |
239 parameters | Δρmax = 0.46 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C20H22N2O2 | V = 1717.7 (2) Å3 |
Mr = 322.40 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.9926 (7) Å | µ = 0.08 mm−1 |
b = 12.3287 (11) Å | T = 100 K |
c = 13.9635 (12) Å | 0.36 × 0.17 × 0.16 mm |
β = 93.120 (3)° |
Bruker APEX DUO CCD area-detector diffractometer | 6168 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4186 reflections with I > 2σ(I) |
Tmin = 0.972, Tmax = 0.987 | Rint = 0.055 |
22823 measured reflections |
R[F2 > 2σ(F2)] = 0.053 | 0 restraints |
wR(F2) = 0.168 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.46 e Å−3 |
6168 reflections | Δρmin = −0.30 e Å−3 |
239 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.48537 (10) | 0.96613 (8) | 0.17446 (8) | 0.0271 (2) | |
O2 | 0.65687 (10) | 1.02815 (8) | 0.09245 (8) | 0.0254 (2) | |
N1 | 0.90319 (11) | 0.57520 (9) | 0.18622 (8) | 0.0193 (2) | |
N2 | 0.99597 (11) | 0.71445 (9) | 0.10769 (8) | 0.0182 (2) | |
C1 | 1.25733 (14) | 0.59498 (11) | 0.13359 (10) | 0.0227 (3) | |
H1A | 1.2658 | 0.6666 | 0.1538 | 0.027* | |
C2 | 1.37107 (15) | 0.53521 (12) | 0.11435 (11) | 0.0268 (3) | |
H2A | 1.4553 | 0.5672 | 0.1213 | 0.032* | |
C3 | 1.35904 (15) | 0.42848 (12) | 0.08494 (11) | 0.0276 (3) | |
H3A | 1.4353 | 0.3887 | 0.0726 | 0.033* | |
C4 | 1.23430 (16) | 0.38062 (12) | 0.07376 (10) | 0.0259 (3) | |
H4A | 1.2267 | 0.3087 | 0.0541 | 0.031* | |
C5 | 1.12036 (15) | 0.43963 (11) | 0.09179 (10) | 0.0216 (3) | |
H5A | 1.0364 | 0.4074 | 0.0834 | 0.026* | |
C6 | 1.13109 (13) | 0.54764 (10) | 0.12256 (9) | 0.0182 (2) | |
C7 | 1.01178 (13) | 0.61389 (10) | 0.13933 (9) | 0.0172 (2) | |
C8 | 0.81056 (13) | 0.65853 (10) | 0.18441 (9) | 0.0184 (2) | |
C9 | 0.68265 (14) | 0.66727 (11) | 0.21995 (10) | 0.0222 (3) | |
H9A | 0.6440 | 0.6104 | 0.2524 | 0.027* | |
C10 | 0.61687 (14) | 0.76473 (11) | 0.20428 (10) | 0.0213 (3) | |
H10A | 0.5318 | 0.7735 | 0.2271 | 0.026* | |
C11 | 0.67404 (13) | 0.85123 (10) | 0.15492 (9) | 0.0179 (2) | |
C12 | 0.80110 (13) | 0.84152 (10) | 0.11974 (9) | 0.0179 (2) | |
H12A | 0.8389 | 0.8982 | 0.0865 | 0.021* | |
C13 | 0.87006 (13) | 0.74459 (10) | 0.13564 (9) | 0.0165 (2) | |
C14 | 0.59468 (14) | 0.95227 (10) | 0.14299 (9) | 0.0200 (3) | |
C15 | 0.58654 (17) | 1.13040 (11) | 0.08026 (12) | 0.0296 (3) | |
H15A | 0.5857 | 1.1685 | 0.1410 | 0.036* | |
H15B | 0.4946 | 1.1180 | 0.0569 | 0.036* | |
C16 | 0.65916 (17) | 1.19568 (12) | 0.00926 (12) | 0.0325 (3) | |
H16A | 0.6164 | 1.2650 | 0.0006 | 0.049* | |
H16B | 0.6572 | 1.1580 | −0.0510 | 0.049* | |
H16C | 0.7505 | 1.2059 | 0.0325 | 0.049* | |
C17A | 0.90159 (17) | 0.47759 (12) | 0.24809 (13) | 0.0195 (3) | 0.900 (4) |
H17A | 0.9893 | 0.4426 | 0.2449 | 0.023* | 0.900 (4) |
C18A | 0.88752 (18) | 0.51121 (14) | 0.35205 (12) | 0.0246 (4) | 0.900 (4) |
H18A | 0.7971 | 0.5372 | 0.3595 | 0.030* | 0.900 (4) |
H18B | 0.9016 | 0.4483 | 0.3931 | 0.030* | 0.900 (4) |
C19A | 0.98655 (19) | 0.59931 (16) | 0.38395 (11) | 0.0279 (4) | 0.900 (4) |
H19A | 0.9823 | 0.6110 | 0.4517 | 0.042* | 0.900 (4) |
H19B | 0.9644 | 0.6654 | 0.3503 | 0.042* | 0.900 (4) |
H19C | 1.0755 | 0.5772 | 0.3700 | 0.042* | 0.900 (4) |
C20A | 0.79610 (19) | 0.39498 (14) | 0.21182 (18) | 0.0290 (4) | 0.900 (4) |
H20A | 0.8087 | 0.3786 | 0.1457 | 0.044* | 0.900 (4) |
H20B | 0.7082 | 0.4247 | 0.2179 | 0.044* | 0.900 (4) |
H20C | 0.8053 | 0.3298 | 0.2492 | 0.044* | 0.900 (4) |
C17B | 0.931 (2) | 0.4995 (15) | 0.2836 (15) | 0.030 (4)* | 0.100 (4) |
H17B | 1.0131 | 0.4586 | 0.2748 | 0.035* | 0.100 (4) |
C18B | 0.815 (2) | 0.4191 (17) | 0.2711 (17) | 0.046 (5)* | 0.100 (4) |
H18C | 0.8371 | 0.3558 | 0.3101 | 0.055* | 0.100 (4) |
H18D | 0.7362 | 0.4521 | 0.2965 | 0.055* | 0.100 (4) |
C19B | 0.780 (3) | 0.383 (2) | 0.1742 (19) | 0.051 (7)* | 0.100 (4) |
H19D | 0.7015 | 0.3376 | 0.1743 | 0.077* | 0.100 (4) |
H19E | 0.8529 | 0.3420 | 0.1505 | 0.077* | 0.100 (4) |
H19F | 0.7618 | 0.4445 | 0.1336 | 0.077* | 0.100 (4) |
C20B | 0.944 (2) | 0.5464 (19) | 0.3761 (14) | 0.037 (4)* | 0.100 (4) |
H20D | 1.0175 | 0.5132 | 0.4120 | 0.055* | 0.100 (4) |
H20E | 0.8628 | 0.5351 | 0.4086 | 0.055* | 0.100 (4) |
H20F | 0.9601 | 0.6228 | 0.3704 | 0.055* | 0.100 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0215 (5) | 0.0248 (5) | 0.0358 (6) | 0.0061 (4) | 0.0090 (4) | 0.0004 (4) |
O2 | 0.0251 (5) | 0.0176 (4) | 0.0341 (5) | 0.0065 (4) | 0.0076 (4) | 0.0053 (4) |
N1 | 0.0176 (5) | 0.0167 (5) | 0.0242 (5) | 0.0018 (4) | 0.0060 (4) | 0.0052 (4) |
N2 | 0.0164 (5) | 0.0170 (5) | 0.0217 (5) | 0.0007 (4) | 0.0046 (4) | 0.0004 (4) |
C1 | 0.0199 (7) | 0.0207 (6) | 0.0276 (6) | 0.0008 (5) | 0.0039 (5) | −0.0009 (5) |
C2 | 0.0182 (7) | 0.0296 (7) | 0.0327 (7) | 0.0025 (5) | 0.0037 (5) | 0.0001 (6) |
C3 | 0.0243 (7) | 0.0305 (7) | 0.0286 (7) | 0.0105 (6) | 0.0047 (5) | −0.0016 (5) |
C4 | 0.0304 (8) | 0.0229 (6) | 0.0244 (6) | 0.0086 (6) | 0.0013 (5) | −0.0035 (5) |
C5 | 0.0222 (7) | 0.0200 (6) | 0.0224 (6) | 0.0020 (5) | 0.0008 (5) | −0.0017 (4) |
C6 | 0.0184 (6) | 0.0186 (5) | 0.0180 (5) | 0.0030 (5) | 0.0037 (4) | 0.0014 (4) |
C7 | 0.0157 (6) | 0.0178 (5) | 0.0182 (5) | 0.0013 (4) | 0.0026 (4) | 0.0005 (4) |
C8 | 0.0171 (6) | 0.0165 (5) | 0.0217 (6) | 0.0007 (4) | 0.0032 (5) | 0.0026 (4) |
C9 | 0.0172 (6) | 0.0209 (6) | 0.0289 (7) | −0.0007 (5) | 0.0056 (5) | 0.0058 (5) |
C10 | 0.0157 (6) | 0.0213 (6) | 0.0272 (6) | 0.0008 (5) | 0.0054 (5) | 0.0017 (5) |
C11 | 0.0165 (6) | 0.0164 (5) | 0.0209 (6) | 0.0009 (4) | 0.0018 (4) | 0.0001 (4) |
C12 | 0.0181 (6) | 0.0154 (5) | 0.0205 (6) | −0.0002 (4) | 0.0040 (5) | 0.0002 (4) |
C13 | 0.0159 (6) | 0.0150 (5) | 0.0190 (5) | −0.0009 (4) | 0.0036 (4) | 0.0002 (4) |
C14 | 0.0192 (6) | 0.0186 (5) | 0.0223 (6) | 0.0016 (5) | 0.0020 (5) | −0.0010 (4) |
C15 | 0.0331 (8) | 0.0192 (6) | 0.0373 (8) | 0.0110 (6) | 0.0090 (6) | 0.0046 (5) |
C16 | 0.0369 (9) | 0.0224 (6) | 0.0387 (8) | 0.0056 (6) | 0.0075 (7) | 0.0064 (6) |
C17A | 0.0188 (7) | 0.0150 (6) | 0.0249 (8) | 0.0014 (5) | 0.0035 (6) | 0.0065 (6) |
C18A | 0.0219 (8) | 0.0305 (8) | 0.0220 (7) | 0.0040 (7) | 0.0056 (6) | 0.0087 (6) |
C19A | 0.0277 (9) | 0.0365 (10) | 0.0194 (7) | 0.0063 (8) | 0.0005 (6) | −0.0018 (6) |
C20A | 0.0262 (9) | 0.0185 (7) | 0.0426 (13) | −0.0041 (6) | 0.0040 (8) | 0.0028 (8) |
O1—C14 | 1.2114 (16) | C15—C16 | 1.495 (2) |
O2—C14 | 1.3443 (16) | C15—H15A | 0.9700 |
O2—C15 | 1.4488 (16) | C15—H15B | 0.9700 |
N1—C8 | 1.3821 (16) | C16—H16A | 0.9600 |
N1—C7 | 1.3824 (16) | C16—H16B | 0.9600 |
N1—C17A | 1.4820 (17) | C16—H16C | 0.9600 |
N1—C17B | 1.660 (19) | C17A—C18A | 1.523 (2) |
N2—C7 | 1.3228 (16) | C17A—C20A | 1.532 (3) |
N2—C13 | 1.3881 (16) | C17A—H17A | 0.9800 |
C1—C6 | 1.3908 (19) | C18A—C19A | 1.520 (3) |
C1—C2 | 1.3929 (19) | C18A—H18A | 0.9700 |
C1—H1A | 0.9300 | C18A—H18B | 0.9700 |
C2—C3 | 1.382 (2) | C19A—H19A | 0.9600 |
C2—H2A | 0.9300 | C19A—H19B | 0.9600 |
C3—C4 | 1.380 (2) | C19A—H19C | 0.9600 |
C3—H3A | 0.9300 | C20A—H20A | 0.9600 |
C4—C5 | 1.3857 (19) | C20A—H20B | 0.9600 |
C4—H4A | 0.9300 | C20A—H20C | 0.9600 |
C5—C6 | 1.4016 (18) | C17B—C20B | 1.41 (3) |
C5—H5A | 0.9300 | C17B—C18B | 1.53 (3) |
C6—C7 | 1.4743 (17) | C17B—H17B | 0.9800 |
C8—C9 | 1.4002 (18) | C18B—C19B | 1.45 (3) |
C8—C13 | 1.4096 (17) | C18B—H18C | 0.9700 |
C9—C10 | 1.3814 (18) | C18B—H18D | 0.9700 |
C9—H9A | 0.9300 | C19B—H19D | 0.9600 |
C10—C11 | 1.4076 (18) | C19B—H19E | 0.9600 |
C10—H10A | 0.9300 | C19B—H19F | 0.9600 |
C11—C12 | 1.3913 (17) | C20B—H20D | 0.9600 |
C11—C14 | 1.4813 (18) | C20B—H20E | 0.9600 |
C12—C13 | 1.3912 (17) | C20B—H20F | 0.9600 |
C12—H12A | 0.9300 | ||
C14—O2—C15 | 115.59 (11) | O2—C14—C11 | 112.60 (11) |
C8—N1—C7 | 106.08 (10) | O2—C15—C16 | 107.24 (12) |
C8—N1—C17A | 125.86 (11) | O2—C15—H15A | 110.3 |
C7—N1—C17A | 126.15 (11) | C16—C15—H15A | 110.3 |
C8—N1—C17B | 120.9 (7) | O2—C15—H15B | 110.3 |
C7—N1—C17B | 118.9 (7) | C16—C15—H15B | 110.3 |
C17A—N1—C17B | 21.9 (7) | H15A—C15—H15B | 108.5 |
C7—N2—C13 | 104.52 (10) | C15—C16—H16A | 109.5 |
C6—C1—C2 | 120.08 (13) | C15—C16—H16B | 109.5 |
C6—C1—H1A | 120.0 | H16A—C16—H16B | 109.5 |
C2—C1—H1A | 120.0 | C15—C16—H16C | 109.5 |
C3—C2—C1 | 120.17 (14) | H16A—C16—H16C | 109.5 |
C3—C2—H2A | 119.9 | H16B—C16—H16C | 109.5 |
C1—C2—H2A | 119.9 | N1—C17A—C18A | 109.82 (13) |
C4—C3—C2 | 120.27 (13) | N1—C17A—C20A | 112.10 (16) |
C4—C3—H3A | 119.9 | C18A—C17A—C20A | 113.48 (15) |
C2—C3—H3A | 119.9 | N1—C17A—H17A | 107.0 |
C3—C4—C5 | 120.06 (13) | C18A—C17A—H17A | 107.0 |
C3—C4—H4A | 120.0 | C20A—C17A—H17A | 107.0 |
C5—C4—H4A | 120.0 | C19A—C18A—C17A | 112.42 (13) |
C4—C5—C6 | 120.30 (13) | C19A—C18A—H18A | 109.1 |
C4—C5—H5A | 119.8 | C17A—C18A—H18A | 109.1 |
C6—C5—H5A | 119.8 | C19A—C18A—H18B | 109.1 |
C1—C6—C5 | 119.11 (12) | C17A—C18A—H18B | 109.1 |
C1—C6—C7 | 119.10 (11) | H18A—C18A—H18B | 107.9 |
C5—C6—C7 | 121.73 (12) | C20B—C17B—C18B | 113.7 (17) |
N2—C7—N1 | 113.51 (11) | C20B—C17B—N1 | 121.4 (15) |
N2—C7—C6 | 123.31 (11) | C18B—C17B—N1 | 100.4 (14) |
N1—C7—C6 | 123.12 (11) | C20B—C17B—H17B | 106.8 |
N1—C8—C9 | 132.38 (12) | C18B—C17B—H17B | 106.8 |
N1—C8—C13 | 105.59 (11) | N1—C17B—H17B | 106.8 |
C9—C8—C13 | 122.03 (12) | C19B—C18B—C17B | 117 (2) |
C10—C9—C8 | 116.52 (12) | C19B—C18B—H18C | 108.1 |
C10—C9—H9A | 121.7 | C17B—C18B—H18C | 108.1 |
C8—C9—H9A | 121.7 | C19B—C18B—H18D | 108.1 |
C9—C10—C11 | 122.29 (12) | C17B—C18B—H18D | 108.1 |
C9—C10—H10A | 118.9 | H18C—C18B—H18D | 107.3 |
C11—C10—H10A | 118.9 | C18B—C19B—H19D | 109.5 |
C12—C11—C10 | 120.68 (12) | C18B—C19B—H19E | 109.5 |
C12—C11—C14 | 121.73 (11) | H19D—C19B—H19E | 109.5 |
C10—C11—C14 | 117.59 (11) | C18B—C19B—H19F | 109.5 |
C13—C12—C11 | 118.11 (11) | H19D—C19B—H19F | 109.5 |
C13—C12—H12A | 120.9 | H19E—C19B—H19F | 109.5 |
C11—C12—H12A | 120.9 | C17B—C20B—H20D | 109.5 |
N2—C13—C12 | 129.33 (11) | C17B—C20B—H20E | 109.5 |
N2—C13—C8 | 110.30 (11) | H20D—C20B—H20E | 109.5 |
C12—C13—C8 | 120.36 (11) | C17B—C20B—H20F | 109.5 |
O1—C14—O2 | 122.96 (12) | H20D—C20B—H20F | 109.5 |
O1—C14—C11 | 124.44 (12) | H20E—C20B—H20F | 109.5 |
C6—C1—C2—C3 | −0.5 (2) | C14—C11—C12—C13 | 178.75 (12) |
C1—C2—C3—C4 | 0.5 (2) | C7—N2—C13—C12 | −178.75 (13) |
C2—C3—C4—C5 | 0.2 (2) | C7—N2—C13—C8 | −0.44 (14) |
C3—C4—C5—C6 | −0.8 (2) | C11—C12—C13—N2 | 179.43 (12) |
C2—C1—C6—C5 | −0.1 (2) | C11—C12—C13—C8 | 1.26 (18) |
C2—C1—C6—C7 | −177.39 (12) | N1—C8—C13—N2 | 0.35 (14) |
C4—C5—C6—C1 | 0.76 (19) | C9—C8—C13—N2 | −179.65 (12) |
C4—C5—C6—C7 | 177.94 (12) | N1—C8—C13—C12 | 178.83 (12) |
C13—N2—C7—N1 | 0.37 (15) | C9—C8—C13—C12 | −1.2 (2) |
C13—N2—C7—C6 | 177.83 (12) | C15—O2—C14—O1 | 2.0 (2) |
C8—N1—C7—N2 | −0.16 (15) | C15—O2—C14—C11 | −178.34 (12) |
C17A—N1—C7—N2 | −165.11 (14) | C12—C11—C14—O1 | −177.85 (13) |
C17B—N1—C7—N2 | −140.5 (8) | C10—C11—C14—O1 | 1.6 (2) |
C8—N1—C7—C6 | −177.63 (12) | C12—C11—C14—O2 | 2.47 (18) |
C17A—N1—C7—C6 | 17.4 (2) | C10—C11—C14—O2 | −178.11 (12) |
C17B—N1—C7—C6 | 42.1 (8) | C14—O2—C15—C16 | −170.51 (13) |
C1—C6—C7—N2 | 43.20 (18) | C8—N1—C17A—C18A | −51.0 (2) |
C5—C6—C7—N2 | −133.98 (14) | C7—N1—C17A—C18A | 111.06 (15) |
C1—C6—C7—N1 | −139.58 (13) | C17B—N1—C17A—C18A | 33.3 (18) |
C5—C6—C7—N1 | 43.24 (18) | C8—N1—C17A—C20A | 76.11 (19) |
C7—N1—C8—C9 | 179.88 (15) | C7—N1—C17A—C20A | −121.83 (15) |
C17A—N1—C8—C9 | −15.1 (2) | C17B—N1—C17A—C20A | 160.4 (18) |
C17B—N1—C8—C9 | −40.8 (9) | N1—C17A—C18A—C19A | −49.37 (18) |
C7—N1—C8—C13 | −0.12 (14) | C20A—C17A—C18A—C19A | −175.71 (14) |
C17A—N1—C8—C13 | 164.89 (14) | C8—N1—C17B—C20B | −44 (2) |
C17B—N1—C8—C13 | 139.2 (9) | C7—N1—C17B—C20B | 90.2 (18) |
N1—C8—C9—C10 | −179.62 (14) | C17A—N1—C17B—C20B | −154 (3) |
C13—C8—C9—C10 | 0.4 (2) | C8—N1—C17B—C18B | 82.2 (13) |
C8—C9—C10—C11 | 0.3 (2) | C7—N1—C17B—C18B | −143.5 (10) |
C9—C10—C11—C12 | −0.1 (2) | C17A—N1—C17B—C18B | −27.8 (13) |
C9—C10—C11—C14 | −179.54 (13) | C20B—C17B—C18B—C19B | 169 (2) |
C10—C11—C12—C13 | −0.65 (19) | N1—C17B—C18B—C19B | 38 (2) |
Cg1 is the centroid of the N1/N2/C7–C8/C13 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9A···O1i | 0.93 | 2.45 | 3.3781 (17) | 172 |
C20A—H20B···O1i | 0.96 | 2.56 | 3.419 (2) | 148 |
C19A—H19B···Cg1 | 0.96 | 2.80 | 3.3793 (17) | 120 |
Symmetry code: (i) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C20H22N2O2 |
Mr | 322.40 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 9.9926 (7), 12.3287 (11), 13.9635 (12) |
β (°) | 93.120 (3) |
V (Å3) | 1717.7 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.36 × 0.17 × 0.16 |
Data collection | |
Diffractometer | Bruker APEX DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.972, 0.987 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22823, 6168, 4186 |
Rint | 0.055 |
(sin θ/λ)max (Å−1) | 0.756 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.168, 1.06 |
No. of reflections | 6168 |
No. of parameters | 239 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.46, −0.30 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is the centroid of the N1/N2/C7–C8/C13 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9A···O1i | 0.9300 | 2.4500 | 3.3781 (17) | 172.00 |
C20A—H20B···O1i | 0.9600 | 2.5600 | 3.419 (2) | 148.00 |
C19A—H19B···Cg1 | 0.9600 | 2.8000 | 3.3793 (17) | 120.00 |
Symmetry code: (i) −x+1, y−1/2, −z+1/2. |
Acknowledgements
NA, ASAR and SAH are grateful to Universiti Sains Malaysia (USM) and the International Islamic University Malaysia (IIUM) for funding the synthetic chemistry work under the USM Research University Grant (1001/PFARMASI/815026) and the IIUM Research Endowment Grant (EDW B 0902-206). NA also thanks USM for the award of postdoctoral fellowship. HKF and MH thank the Malaysian Government and USM for the Research University Golden Goose grant No. 1001/PFIZIK/811012. MH also thanks USM for a post-doctoral research fellowship.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The benzimidazole motif is an important pharmacophore in drug discovery (Spasov et al., 1999). Substituted benzimidazole derivatives have diverse therapeutic applications as they exhibit antihistamine (Grassmann et al., 2002), anti-HIV-1 (Evans et al., 1997), antitumour (White et al., 2004) and potential anticancer activities (Demirayak et al., 2002). In view of their importance in the field of drug discovery, the crystal structure determination of the title compound was carried out and the results are presented here.
In the asymmetric unit of the title compound (Fig. 1), the benzimidazole ring system is essentially planar with a maximum deviation of 0.024 (1)Å for atom N2. The butyl group is disordered over two sites with occupancies of 0.900 (4) and 0.100 (4). The dihedral angle between the benzimidazole ring system (N1–N2/C7–C13) and the phenyl ring (C1–C6) is 43.71 (5)° . In the crystal structure (Fig. 2), molecules are connected by weak intermolecular C9—H9A···O1i and C20A—H20B···O1i (see Table 1 for symmetry codes) hydrogen bonds, forming one-dimensional chains along the b-axis. The crystal structure is further stabilized by C—H···π interactions (Table 1), involving N1–N2/C7–C8/C13 (centroid Cg1).