organic compounds
1,4-Bis(hexyloxy)-2,5-diiodobenzene
aInstitute of Chemistry, University of Neuchâtel, rue Emile-Argand 11, 2009 Neuchâtel, Switzerland, bXRD Application LAB, Microsystems Technology Division, Swiss Center for Electronics and Microtechnology, rue Jaquet Droz 1, CH-2001 Neuchâtel, Switzerland, and cInstitute of Physics, University of Neuchâtel, rue Emile-Argand 11, 2009 Neuchâtel, Switzerland
*Correspondence e-mail: reinhard.neier@unine.ch
The centrosymmetric title compound, C18H28I2O2, crystallized in the monoclinic P21/c with the alkyl chains having extended all-trans conformations, similar to those in the centrosymmetric bromo analogue [Li et al. (2008). Acta Cryst. E64, o1930] that crystallized in the triclinic P. The difference between the two structures lies in the orientation of the two alkyl chains with respect to the C(aromatic)—O bond. In the title compound, the O—Calkyl—Calkyl—Calkyl torsion angle is 55.8 (5)°, while in the bromo analogue this angle is −179.1 (2)°. In the title compound, the C-atoms of the alkyl chain are almost coplanar [maximum deviation of 0.052 (5) Å] and this mean plane is inclined to the benzene ring by 50.3 (3)°. In the bromo-analogue, these two mean planes are almost coplanar, making a dihedral angle of 4.1 (2)°. Another difference between the crystal structures of the two compounds is that in the title compound there are no halide⋯halide interactions. Instead, symmetry-related molecules are linked via C—H⋯π contacts, forming a two-dimensional network.
Related literature
For use of the title compound in the synthesis of conjugated polymers, see: Van Heyningen et al. (2003); Mayor & Didschies (2003). For the various syntheses of the title compound, see: Castanet et al. (2002); Van Heyningen et al. (2003); Mayor & Didschies (2003); Plater et al. (2004). For the synthesis and of the bromo analogue, see: Maruyama & Kawanishi (2002); Li et al. (2008). For bond distances, see Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: EXPOSE in IPDS-I (Stoe & Cie, 2000); cell CELL in IPDS-I; data reduction: INTEGRATE in IPDS-I; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810005258/lx2134sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810005258/lx2134Isup2.hkl
The title compound was synthesized by iodination of 1,4-bis(hexyloxy)benzene (Castanet et al., 2002). To a solution of 1,4-bis(hexyloxy)benzene (0.75 mmol) and N-iodosuccinimide (2.40 mmol) in dry acetonitrile (5.0 ml) was added trifluoroacetic acid (1.50 mmol) at RT. The mixture was heated and stirred at 363 K for 2 h. The reaction mixture was then cooled to RT and concentrated. Diethyl ether (30 ml) was added and the heterogeneous mixture was filtered to remove the white precipitate of succinimide that had formed. The organic layer was then washed with 10% NaHSO3 (aq) (3 × 30 ml) and dried over MgSO4. The crude product was purified by δ 7.17 (s, 2H, H3,3i), 3.93 (t, J = 6.6 Hz, 4H, H1'), 1.80 (quint, J = 6.6 Hz, 4H, H2'), 1.50 (m, 4H, H3'), 1.35 (m, 8H, H4',5'), 0.91 (t, J = 7.0 Hz, H6'); 13C NMR, 100 MHz (CDCl3) δ 152.8 (C2,2i), 122.7 (C3,3i), 86.3 (C1,1i), 70.3 (C1'), 31.4 (C5'), 29.1 (C2'), 25.7 (C3'), 22.6 (C4'), 14.0 (C6'); MS (EI): [M]+ = 529.95. The same numbering scheme has been used for the crystal structure.
[silica gel, Petroleum ether : CH2Cl2 (5:1)] and recrystallisation in methanol. Single crystals of the title compound were grown by slow evaporation of a concentrated solution in CH2Cl2 at RT. 1H NMR, 400 MHz (CDCl3)The H-atoms could all be located in difference electron-density maps. In the final cycles of
they were included in calculated positions and treated as riding atoms: C—H = 0.98 - 0.99 Å, with Uiso(H) = k × Ueq(parent C-atom), where k = 1.2 for H-aromatic and H-methylene, and 1.5 for H-methyl.Data collection: EXPOSE in IPDS-I (Stoe & Cie, 2000); cell
CELL in IPDS-I (Stoe & Cie, 2000); data reduction: INTEGRATE in IPDS-I (Stoe & Cie, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXL97 & PLATON (Spek, 2009).C18H28I2O2 | F(000) = 516 |
Mr = 530.20 | Dx = 1.767 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 7553 reflections |
a = 9.4481 (9) Å | θ = 0.9–26.3° |
b = 7.8455 (6) Å | µ = 3.16 mm−1 |
c = 13.457 (2) Å | T = 173 K |
β = 92.148 (12)° | Rod, colorless |
V = 996.80 (16) Å3 | 0.32 × 0.11 × 0.06 mm |
Z = 2 |
STOE IPDS diffractometer | 1962 independent reflections |
Radiation source: fine-focus sealed tube | 1216 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.058 |
ϕ rotation scans | θmax = 26.1°, θmin = 2.6° |
Absorption correction: multi-scan MULscanABS in PLATON (Spek, 2009) | h = −11→11 |
Tmin = 0.952, Tmax = 1.042 | k = −9→9 |
7660 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.029 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.055 | H-atom parameters constrained |
S = 0.79 | w = 1/[σ2(Fo2) + (0.0227P)2] where P = (Fo2 + 2Fc2)/3 |
1962 reflections | (Δ/σ)max < 0.001 |
101 parameters | Δρmax = 0.81 e Å−3 |
0 restraints | Δρmin = −1.31 e Å−3 |
C18H28I2O2 | V = 996.80 (16) Å3 |
Mr = 530.20 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.4481 (9) Å | µ = 3.16 mm−1 |
b = 7.8455 (6) Å | T = 173 K |
c = 13.457 (2) Å | 0.32 × 0.11 × 0.06 mm |
β = 92.148 (12)° |
STOE IPDS diffractometer | 1962 independent reflections |
Absorption correction: multi-scan MULscanABS in PLATON (Spek, 2009) | 1216 reflections with I > 2σ(I) |
Tmin = 0.952, Tmax = 1.042 | Rint = 0.058 |
7660 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | 0 restraints |
wR(F2) = 0.055 | H-atom parameters constrained |
S = 0.79 | Δρmax = 0.81 e Å−3 |
1962 reflections | Δρmin = −1.31 e Å−3 |
101 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
I1 | 0.82998 (3) | 0.69287 (4) | 0.01561 (3) | 0.0307 (1) | |
O1 | 0.7295 (3) | 0.3497 (4) | 0.0975 (2) | 0.0276 (10) | |
C1 | 0.6122 (4) | 0.4192 (6) | 0.0508 (3) | 0.0215 (14) | |
C1' | 0.7158 (4) | 0.1961 (7) | 0.1533 (3) | 0.0279 (16) | |
C2 | 0.6307 (4) | 0.5768 (6) | 0.0054 (3) | 0.0214 (16) | |
C2' | 0.8638 (5) | 0.1475 (6) | 0.1902 (4) | 0.0286 (16) | |
C3 | 0.5180 (4) | 0.6593 (6) | −0.0459 (3) | 0.0170 (14) | |
C3' | 0.9402 (4) | 0.2857 (6) | 0.2498 (3) | 0.0242 (16) | |
C4' | 1.0897 (5) | 0.2350 (6) | 0.2818 (3) | 0.0261 (16) | |
C5' | 1.1699 (5) | 0.3737 (6) | 0.3398 (4) | 0.0332 (17) | |
C6' | 1.3227 (5) | 0.3225 (8) | 0.3657 (4) | 0.0373 (16) | |
H1'1 | 0.67420 | 0.10460 | 0.11080 | 0.0340* | |
H1'2 | 0.65390 | 0.21470 | 0.21010 | 0.0340* | |
H3 | 0.53150 | 0.76690 | −0.07650 | 0.0210* | |
H2'1 | 0.92060 | 0.11840 | 0.13220 | 0.0340* | |
H2'2 | 0.85780 | 0.04420 | 0.23210 | 0.0340* | |
H3'1 | 0.94350 | 0.39070 | 0.20920 | 0.0290* | |
H3'2 | 0.88620 | 0.31150 | 0.30960 | 0.0290* | |
H4'1 | 1.14270 | 0.20610 | 0.22190 | 0.0310* | |
H4'2 | 1.08590 | 0.13140 | 0.32350 | 0.0310* | |
H5'1 | 1.12050 | 0.39790 | 0.40180 | 0.0400* | |
H5'2 | 1.16960 | 0.47950 | 0.29970 | 0.0400* | |
H6'1 | 1.32350 | 0.21600 | 0.40380 | 0.0560* | |
H6'2 | 1.36880 | 0.41260 | 0.40570 | 0.0560* | |
H6'3 | 1.37380 | 0.30610 | 0.30440 | 0.0560* |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1 | 0.0231 (1) | 0.0311 (2) | 0.0374 (2) | −0.0054 (2) | −0.0051 (1) | 0.0055 (2) |
O1 | 0.0202 (14) | 0.026 (2) | 0.0358 (19) | −0.0003 (12) | −0.0093 (13) | 0.0145 (15) |
C1 | 0.019 (2) | 0.021 (3) | 0.024 (2) | 0.0025 (18) | −0.0054 (18) | −0.001 (2) |
C1' | 0.028 (2) | 0.021 (3) | 0.034 (3) | −0.003 (2) | −0.0063 (19) | 0.007 (3) |
C2 | 0.021 (2) | 0.023 (3) | 0.020 (3) | −0.0020 (18) | −0.0013 (17) | −0.003 (2) |
C2' | 0.029 (2) | 0.025 (3) | 0.031 (3) | 0.001 (2) | −0.008 (2) | 0.005 (2) |
C3 | 0.0108 (19) | 0.022 (3) | 0.018 (2) | −0.0001 (18) | −0.0003 (16) | −0.001 (2) |
C3' | 0.022 (2) | 0.023 (3) | 0.027 (3) | 0.002 (2) | −0.0054 (18) | 0.004 (2) |
C4' | 0.028 (2) | 0.026 (3) | 0.024 (3) | 0.0020 (18) | −0.004 (2) | 0.006 (2) |
C5' | 0.031 (3) | 0.025 (3) | 0.043 (3) | −0.001 (2) | −0.007 (2) | 0.008 (2) |
C6' | 0.027 (2) | 0.039 (3) | 0.045 (3) | −0.006 (3) | −0.010 (2) | 0.002 (3) |
I1—C2 | 2.091 (4) | C2'—H2'1 | 0.9900 |
O1—C1 | 1.367 (5) | C2'—H2'2 | 0.9900 |
O1—C1' | 1.428 (6) | C3—H3 | 0.9500 |
C1—C2 | 1.393 (6) | C3'—H3'1 | 0.9900 |
C1—C3i | 1.375 (6) | C3'—H3'2 | 0.9900 |
C1'—C2' | 1.515 (6) | C4'—H4'1 | 0.9900 |
C2—C3 | 1.405 (6) | C4'—H4'2 | 0.9900 |
C2'—C3' | 1.515 (7) | C5'—H5'1 | 0.9900 |
C3'—C4' | 1.514 (6) | C5'—H5'2 | 0.9900 |
C4'—C5' | 1.524 (7) | C6'—H6'1 | 0.9800 |
C5'—C6' | 1.526 (7) | C6'—H6'2 | 0.9800 |
C1'—H1'1 | 0.9900 | C6'—H6'3 | 0.9800 |
C1'—H1'2 | 0.9900 | ||
I1···O1 | 3.073 (3) | H2'1···H4'1 | 2.4800 |
I1···C6'ii | 3.736 (5) | H2'2···H4'2 | 2.5400 |
I1···H3'2iii | 3.3100 | H2'2···O1vii | 2.9000 |
I1···H4'1iv | 3.3100 | H2'2···C1vii | 3.0800 |
O1···I1 | 3.073 (3) | H3'1···O1 | 2.4900 |
O1···H3'1 | 2.4900 | H3'1···H5'2 | 2.5200 |
O1···H2'2iii | 2.9000 | H3'2···H5'1 | 2.5900 |
O1···H6'1v | 2.8300 | H3'2···I1vii | 3.3100 |
C6'···I1vi | 3.736 (5) | H4'1···H2'1 | 2.4800 |
C1···H4'2iii | 3.0600 | H4'1···H6'3 | 2.5400 |
C1···H4'2v | 3.0900 | H4'1···H5'2vi | 2.5400 |
C1···H2'2iii | 3.0800 | H4'1···I1iv | 3.3100 |
C1···H6'1v | 3.0500 | H4'2···H2'2 | 2.5400 |
C1'···H3i | 2.5400 | H4'2···H6'1 | 2.5400 |
C2···H4'2v | 2.9600 | H4'2···C1vii | 3.0600 |
C3···H5'1iii | 3.0300 | H4'2···C1viii | 3.0900 |
C3···H1'2i | 2.8700 | H4'2···C2viii | 2.9600 |
C3···H4'2v | 2.9600 | H4'2···C3viii | 2.9600 |
C3···H1'1i | 2.7200 | H5'1···H3'2 | 2.5900 |
H1'1···C3i | 2.7200 | H5'1···C3vii | 3.0300 |
H1'1···H3i | 2.2200 | H5'2···H3'1 | 2.5200 |
H1'2···C3i | 2.8700 | H5'2···H4'1ii | 2.5400 |
H1'2···H3i | 2.4700 | H6'1···H4'2 | 2.5400 |
H3···C1'i | 2.5400 | H6'1···O1viii | 2.8300 |
H3···H1'1i | 2.2200 | H6'1···C1viii | 3.0500 |
H3···H1'2i | 2.4700 | H6'3···H4'1 | 2.5400 |
C1—O1—C1' | 119.4 (3) | C2—C3—H3 | 121.00 |
O1—C1—C2 | 116.3 (3) | C1i—C3—H3 | 121.00 |
O1—C1—C3i | 123.5 (4) | C2'—C3'—H3'1 | 109.00 |
C2—C1—C3i | 120.2 (4) | C2'—C3'—H3'2 | 109.00 |
O1—C1'—C2' | 106.5 (3) | C4'—C3'—H3'1 | 109.00 |
I1—C2—C1 | 119.0 (3) | C4'—C3'—H3'2 | 109.00 |
I1—C2—C3 | 119.7 (3) | H3'1—C3'—H3'2 | 108.00 |
C1—C2—C3 | 121.3 (4) | C3'—C4'—H4'1 | 109.00 |
C1'—C2'—C3' | 114.1 (4) | C3'—C4'—H4'2 | 109.00 |
C1i—C3—C2 | 118.5 (4) | C5'—C4'—H4'1 | 109.00 |
C2'—C3'—C4' | 112.5 (4) | C5'—C4'—H4'2 | 109.00 |
C3'—C4'—C5' | 113.5 (4) | H4'1—C4'—H4'2 | 108.00 |
C4'—C5'—C6' | 112.1 (4) | C4'—C5'—H5'1 | 109.00 |
O1—C1'—H1'1 | 110.00 | C4'—C5'—H5'2 | 109.00 |
O1—C1'—H1'2 | 110.00 | C6'—C5'—H5'1 | 109.00 |
C2'—C1'—H1'1 | 110.00 | C6'—C5'—H5'2 | 109.00 |
C2'—C1'—H1'2 | 110.00 | H5'1—C5'—H5'2 | 108.00 |
H1'1—C1'—H1'2 | 109.00 | C5'—C6'—H6'1 | 109.00 |
C1'—C2'—H2'1 | 109.00 | C5'—C6'—H6'2 | 109.00 |
C1'—C2'—H2'2 | 109.00 | C5'—C6'—H6'3 | 110.00 |
C3'—C2'—H2'1 | 109.00 | H6'1—C6'—H6'2 | 109.00 |
C3'—C2'—H2'2 | 109.00 | H6'1—C6'—H6'3 | 110.00 |
H2'1—C2'—H2'2 | 108.00 | H6'2—C6'—H6'3 | 110.00 |
C1'—O1—C1—C2 | 174.3 (4) | C2—C1—C3i—C2i | −0.2 (6) |
C1'—O1—C1—C3i | −6.7 (6) | O1—C1'—C2'—C3' | 55.8 (5) |
C1—O1—C1'—C2' | 176.8 (4) | I1—C2—C3—C1i | −179.5 (3) |
O1—C1—C2—I1 | −1.5 (5) | C1—C2—C3—C1i | −0.2 (6) |
O1—C1—C2—C3 | 179.2 (4) | C1'—C2'—C3'—C4' | −177.7 (4) |
C3i—C1—C2—I1 | 179.5 (3) | C2'—C3'—C4'—C5' | 178.6 (4) |
C3i—C1—C2—C3 | 0.2 (6) | C3'—C4'—C5'—C6' | −176.7 (4) |
O1—C1—C3i—C2i | −179.1 (4) |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+5/2, y+1/2, −z+1/2; (iii) −x+3/2, y+1/2, −z+1/2; (iv) −x+2, −y+1, −z; (v) x−1/2, −y+1/2, z−1/2; (vi) −x+5/2, y−1/2, −z+1/2; (vii) −x+3/2, y−1/2, −z+1/2; (viii) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C18H28I2O2 |
Mr | 530.20 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 173 |
a, b, c (Å) | 9.4481 (9), 7.8455 (6), 13.457 (2) |
β (°) | 92.148 (12) |
V (Å3) | 996.80 (16) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.16 |
Crystal size (mm) | 0.32 × 0.11 × 0.06 |
Data collection | |
Diffractometer | STOE IPDS diffractometer |
Absorption correction | Multi-scan MULscanABS in PLATON (Spek, 2009) |
Tmin, Tmax | 0.952, 1.042 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7660, 1962, 1216 |
Rint | 0.058 |
(sin θ/λ)max (Å−1) | 0.618 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.055, 0.79 |
No. of reflections | 1962 |
No. of parameters | 101 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.81, −1.31 |
Computer programs: EXPOSE in IPDS-I (Stoe & Cie, 2000), CELL in IPDS-I (Stoe & Cie, 2000), INTEGRATE in IPDS-I (Stoe & Cie, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2006), SHELXL97 & PLATON (Spek, 2009).
Cg1 is the centroid of the C1–C3/C1i–C3i ring. |
D—H···centroid | C—H | H···Cg | D···Cg | C—H···Cg |
C4'—H4'2···Cgii | 0.99 | 2.74 | 3.595 (5) | 145.0 |
Symmetry codes: (i) -x+1, -y+1, -z; (ii) -x+3/2, y-1/2, -z+1/2. |
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound has been used as a building block for the elaboration of organic–electronic materials, for example as a monomer for the synthesis of conjugated polymers (Van Heyningen et al., 2003; Mayor & Didschies, 2003). Our interest in this compound lies in the possibility of using it as a spacer-unit in linked materials for the creation of structured, discotic mesophases. The synthesis of the title compound has been reported by various groups (Van Heyningen et al., 2003; Mayor & Didschies, 2003; Plater et al., 2004). Here it was synthesized by iodination of 1,4-bis(hexyloxy)benzene (Castanet et al., 2002). The crystal structure of the bromo-analogue, synthesized by (Maruyama & Kawanishi, 2002), has been described by (Li et al., 2008).
The molecular structure of the title compound is illustrated in Fig. 1. Bond lengths are normal (Allen et al., 1987) and similar to those in the bromo-analogue (Li et al., 2008). The molecule possesses Ci symmetry with the inversion center situated at the center of the aromatic ring. The alkyl chains adopt a fully extended all-trans conformation. The C-atoms of the alkyl chain are almost coplanar (max. deviation of 0.052 (5) Å) and this mean plane is inclined to the benzene ring by 50.3 (3)°. In the bromo-analogue the alkyl chains also adopt a fully extended all-trans conformation. The alkyl C-atoms are also coplanar [max. deviation of 0.034 (4) Å] but here lie almost in the same plane as the aromatic ring, with a dihedral angle of 4.1 (2)°.
The different comformations of the two compounds are illustrated in Fig. 2. It can be seen that the alkyl chains are orientated differently with respect to the C(aromatic)—O bonds. The O1—C1'—C2'—C3' torsion angle is 55.8 (5)° in the title compound (Fig. 2b), while in the bromo-analogue this same angle is -179.1 (2)° (Fig. 2a). In the crystal structure of the title compound there are no halide···halide interactions, in contrast to the Br···Br interactions [3.410 (3) Å] observed in the bromo-analogue. However, symmetry related molecules are linked by C—H···π interactions leading to the formation of a two-dimensional network (Table 1 and Fig. 3; Cg is the centroid of the C1–C3/C1i–C3i benzene ring).