organic compounds
Diethyl 2-[(N-benzyl-N-methylamino)(phenyl)methyl]propanedioate
aLaboratoire de Chimie Organique, Faculté des Sciences Dhar el Mahraz, Université Sidi Mohammed Ben Abdellah, Fès, Morocco, bLaboratoire de Chimie de Coordination, 205 Route de Narbonne, 31077 Toulouse Cedex, France, cCentre National pour la Recherche Scientifique et Technique, Division UATRS, Rabat, Morocco, and dLaboratoire de Chimie des Matériaux, Université Med. 1ier, Oujda, Morocco
*Correspondence e-mail: zouihri@cnrst.ma
In the title compound, C22H27NO4, the mean planes of the two benzene rings form a dihedral angle of 73.54 (13)°. One of the methyl groups is disordered over two sites, with site occupation factors of 0.47 (15) and 0.53 (15). The crystal packing is controlled by and a possible C—H⋯O interaction, forming a chain running parallel to the a axis.
Related literature
For related compounds displaying biological activity, see: Dayam et al. (2007); Patil et al. (2007); Ramkumar et al. (2008); Sechi et al. (2009a,b); Zeng et al. (2008a,b). For the synthetic procedure, see: Pommier & Neamati (2006). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
|
Data collection
|
Refinement
|
Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536810007506/pv2262sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810007506/pv2262Isup2.hkl
The title compound, (I), was synthesized from 2-(benzylidene)-malonic acid diethyl
in the presence of benzyl methylamine, in an aqueous medium at room temperature following the procedures reported earlier (Pommier & Neamati, 2006). To a solution of 2-(benzylidene)-malonic acid diethyl ester (1.24 g, 5 mmol) in water (20 ml) was added the benzyl methylamine (0.60 g, 6 mmol) and the stirring was continued at room temperature until the complete consumption of the starting material. After removing solvent, the crude products were dissolved in diethyl ether (2x40 ml) and washed with water until the pH became neutral. The organic solvent layer was dried with sodium sulphate and then evaporated. The residue was purified by recrystallization from a mixture of diethylether/hexane (2:1) to give the pure compound (I) as colorless crystals in 78% yield.All H atoms were fixed geometrically and treated as riding with C—H = 0.98 Å (methyne), 0.97 Å (methylene), 0.96Å (methyl) and 0.93Å (aromatic) with Uiso(H) = 1.2Ueq(C) or Uiso(H) = 1.5Ueq(C-methyl).
One of the methyl group is disordered over two positions with roughly identical occupation factors (0.47 and 0.53). These occupation factors were initially refined restraining their sum to be equal to 1 and applying an overall isotropic thermal parameter for the C atom. Moreover, C—C distances were restraint to have reasonable values. Once the occupation factors have been determined, they were fixed and not refined and the temperature factors were refined freely.
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).C22H27NO4 | F(000) = 792 |
Mr = 369.45 | Dx = 1.205 Mg m−3 |
Monoclinic, P21/c | Melting point = 380–382 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 9.3074 (2) Å | Cell parameters from 3214 reflections |
b = 5.9077 (1) Å | θ = 1.9–25.3° |
c = 37.0971 (7) Å | µ = 0.08 mm−1 |
β = 92.999 (1)° | T = 296 K |
V = 2037.00 (7) Å3 | Block, colourless |
Z = 4 | 0.24 × 0.20 × 0.13 mm |
Bruker X8 APEXII CCD area-detector diffractometer | 3411 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.038 |
Graphite monochromator | θmax = 26.4°, θmin = 1.1° |
ϕ and ω scans | h = −11→11 |
25575 measured reflections | k = −7→7 |
4138 independent reflections | l = −46→46 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.070 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.159 | H-atom parameters constrained |
S = 1.25 | w = 1/[σ2(Fo2) + (0.0364P)2 + 1.9835P] where P = (Fo2 + 2Fc2)/3 |
4138 reflections | (Δ/σ)max < 0.001 |
257 parameters | Δρmax = 0.27 e Å−3 |
1 restraint | Δρmin = −0.26 e Å−3 |
C22H27NO4 | V = 2037.00 (7) Å3 |
Mr = 369.45 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.3074 (2) Å | µ = 0.08 mm−1 |
b = 5.9077 (1) Å | T = 296 K |
c = 37.0971 (7) Å | 0.24 × 0.20 × 0.13 mm |
β = 92.999 (1)° |
Bruker X8 APEXII CCD area-detector diffractometer | 3411 reflections with I > 2σ(I) |
25575 measured reflections | Rint = 0.038 |
4138 independent reflections |
R[F2 > 2σ(F2)] = 0.070 | 1 restraint |
wR(F2) = 0.159 | H-atom parameters constrained |
S = 1.25 | Δρmax = 0.27 e Å−3 |
4138 reflections | Δρmin = −0.26 e Å−3 |
257 parameters |
Experimental. Yield = 78% (1.24 g). Rf = 0.45 (ether/hexane:1/1). Mp = 380-382 K. IR Spectroscopic (KBr, ν cm-1) analysis: 2860/2984 (C—H);1745 (CO); 1216/1301 (C—O); 1584/1601 (C=C), 1138, 1021. NMR analysis: 1H-NMR (250 MHz, CDCl3) δ (ppm): 7.2-7.4(m, 10H, aromat), 4.65 (d, H, Ph—C3H, 3J = 12.15 Hz), 4.01 (dq, 2HAB, OCH2CH3, 2JAB = 14.34 Hz, 3J =7.06 Hz), 4.35 (dq, 2HAB, OCH2CH3, 2JAB = 14.34 Hz,3J = 7.06 Hz), 4.32 (d, H, C2H(CO2Et)2 , 3J = 12.20 Hz), 3.5 (d, 1H, CH2Ph, 3J = 13.2 Hz), 3.25 (d, 1H, CH2Ph, 3J = 13.5 Hz), 2.05 (s, 3H, CH3), 1.33 (t, 3H, OCH2CH3, 3J = 7.2 Hz), 1.01 (t, 3H, OCH2CH3, 3J = 7.2 Hz). 13C-NMR (250 MHz, CDCl3) δ (ppm): 167.97 (C=O), 167.93 (C=O), 133.4 (Cquat, C-(Ph), 132.6 (Cquat, CPhCH2), 126.91/128.03 (Ctert, 10CH aromt), 67.47 (Ctert, C3HPh), 61.24 -61.3 (2 C, 2CH2CH3, ester), 55.39 (Ctert, C2H-(CO2Et), 58.70 (Cses, CľH2N), 36.94 (Cter, CH3N), 14.15/13.73 ( 2 C, 2CH3, esters).. MS (IE) Calcd for [M]+ C22H27NO4: 369.45. [M+H]+. (m/z) = 370, [M—CH(CO2Et)2]+ (m/z) = 159 (100%). Elemental analysis for C22H27NO4 : Calc (Found): C 71.52 (71.48), H 7.37 (7.35), N 3.79 (3.81). The purity of the compound was checked by determining its melting point (380-382 K). Suitable single crystal of malonate derivative (I) was obtained by recrystallization from ethanol. A colorless crystal of (I) having approximate dimensions of 0.24 x 0.20 x 0.09 mm was mounted on a glass fibre. All measurements were made in the ϕ and ω scans technique on a CCD X8 Bruker diffractometer with graphite monochromatized MoKα radiation at room temperature (296 (2) K). The data collection nominally covered a sphere of reciprocal space, by a combination of five sets of exposures; each set had a different ϕ angle for the crystal and each exposure covered 0.5° in ω and 30 seconds in time. The crystal-to-detector distance was 37.5 mm. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.4969 (3) | 0.3979 (4) | 0.18855 (6) | 0.0302 (5) | |
H1A | 0.5442 | 0.5408 | 0.1841 | 0.036* | |
H1B | 0.5646 | 0.3016 | 0.2021 | 0.036* | |
C2 | 0.5612 (3) | 0.3238 (4) | 0.12647 (6) | 0.0290 (5) | |
H2 | 0.5900 | 0.4832 | 0.1279 | 0.035* | |
C3 | 0.4123 (3) | 0.0546 (4) | 0.15968 (7) | 0.0391 (6) | |
H3A | 0.3777 | −0.0094 | 0.1371 | 0.059* | |
H3B | 0.3374 | 0.0494 | 0.1765 | 0.059* | |
H3C | 0.4938 | −0.0305 | 0.1691 | 0.059* | |
C4 | 0.4827 (3) | 0.2917 (4) | 0.08947 (6) | 0.0318 (6) | |
H4 | 0.4493 | 0.1349 | 0.0870 | 0.038* | |
C5 | 0.5794 (3) | 0.3490 (5) | 0.05896 (6) | 0.0354 (6) | |
C6 | 0.3536 (3) | 0.4517 (5) | 0.08739 (6) | 0.0402 (7) | |
C11 | 0.3667 (3) | 0.4396 (4) | 0.21050 (6) | 0.0277 (5) | |
C12 | 0.3634 (3) | 0.3693 (5) | 0.24598 (7) | 0.0379 (6) | |
H12 | 0.4411 | 0.2903 | 0.2565 | 0.045* | |
C13 | 0.2448 (3) | 0.4158 (5) | 0.26603 (7) | 0.0453 (7) | |
H13 | 0.2434 | 0.3673 | 0.2899 | 0.054* | |
C14 | 0.1298 (3) | 0.5327 (5) | 0.25081 (7) | 0.0404 (7) | |
H14 | 0.0509 | 0.5649 | 0.2643 | 0.048* | |
C15 | 0.1318 (3) | 0.6024 (5) | 0.21538 (7) | 0.0388 (6) | |
H15 | 0.0536 | 0.6805 | 0.2049 | 0.047* | |
C16 | 0.2495 (3) | 0.5565 (4) | 0.19540 (6) | 0.0328 (6) | |
H16 | 0.2500 | 0.6046 | 0.1715 | 0.039* | |
C21 | 0.6990 (3) | 0.1854 (4) | 0.13072 (6) | 0.0274 (5) | |
C22 | 0.7136 (3) | −0.0263 (4) | 0.11485 (6) | 0.0306 (5) | |
H22 | 0.6362 | −0.0897 | 0.1015 | 0.037* | |
C23 | 0.8421 (3) | −0.1431 (5) | 0.11870 (7) | 0.0380 (6) | |
H23 | 0.8507 | −0.2839 | 0.1078 | 0.046* | |
C24 | 0.9581 (3) | −0.0524 (5) | 0.13858 (7) | 0.0396 (6) | |
H24 | 1.0448 | −0.1308 | 0.1408 | 0.048* | |
C25 | 0.9443 (3) | 0.1542 (5) | 0.15501 (7) | 0.0403 (7) | |
H25 | 1.0213 | 0.2151 | 0.1688 | 0.048* | |
C26 | 0.8162 (3) | 0.2716 (5) | 0.15109 (6) | 0.0352 (6) | |
H26 | 0.8082 | 0.4115 | 0.1623 | 0.042* | |
C31 | 0.0998 (4) | 0.4617 (8) | 0.07836 (10) | 0.0745 (12) | |
H31A | 0.0644 | 0.4759 | 0.1024 | 0.089* | 0.53 |
H31B | 0.1156 | 0.6124 | 0.0690 | 0.089* | 0.53 |
H31C | 0.0277 | 0.3731 | 0.0900 | 0.089* | 0.47 |
H31D | 0.1145 | 0.5999 | 0.0922 | 0.089* | 0.47 |
C32 | 0.0021 (6) | 0.3502 (13) | 0.05651 (16) | 0.0556 (17) | 0.53 |
H32A | −0.0853 | 0.4364 | 0.0542 | 0.083* | 0.53 |
H32B | −0.0173 | 0.2047 | 0.0667 | 0.083* | 0.53 |
H32C | 0.0398 | 0.3305 | 0.0331 | 0.083* | 0.53 |
C32B | 0.0454 (7) | 0.5197 (15) | 0.04332 (18) | 0.059 (2) | 0.47 |
H32D | 0.0514 | 0.3908 | 0.0277 | 0.088* | 0.47 |
H32E | 0.1010 | 0.6418 | 0.0342 | 0.088* | 0.47 |
H32F | −0.0533 | 0.5659 | 0.0443 | 0.088* | 0.47 |
C41 | 0.6429 (4) | 0.2245 (6) | 0.00078 (8) | 0.0617 (10) | |
H41A | 0.6915 | 0.3698 | 0.0009 | 0.074* | |
H41B | 0.5837 | 0.2120 | −0.0214 | 0.074* | |
C42 | 0.7512 (5) | 0.0371 (8) | 0.00302 (11) | 0.0870 (13) | |
H42A | 0.8178 | 0.0623 | 0.0233 | 0.131* | |
H42B | 0.8025 | 0.0334 | −0.0188 | 0.131* | |
H42C | 0.7029 | −0.1047 | 0.0060 | 0.131* | |
N1 | 0.4551 (2) | 0.2901 (3) | 0.15416 (5) | 0.0284 (5) | |
O1 | 0.3600 (3) | 0.6519 (4) | 0.09128 (6) | 0.0592 (6) | |
O2 | 0.2341 (2) | 0.3345 (4) | 0.07988 (5) | 0.0529 (6) | |
O3 | 0.6643 (3) | 0.5002 (4) | 0.05932 (5) | 0.0576 (6) | |
O4 | 0.5537 (2) | 0.2080 (4) | 0.03170 (5) | 0.0509 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0356 (13) | 0.0276 (13) | 0.0275 (12) | −0.0006 (11) | 0.0029 (10) | −0.0026 (10) |
C2 | 0.0402 (14) | 0.0208 (12) | 0.0263 (11) | 0.0010 (11) | 0.0052 (10) | −0.0036 (10) |
C3 | 0.0504 (16) | 0.0299 (14) | 0.0380 (14) | −0.0036 (13) | 0.0112 (12) | −0.0053 (12) |
C4 | 0.0401 (14) | 0.0275 (13) | 0.0277 (12) | 0.0078 (11) | 0.0007 (10) | −0.0033 (10) |
C5 | 0.0488 (16) | 0.0314 (15) | 0.0260 (12) | 0.0143 (13) | 0.0012 (11) | −0.0011 (11) |
C6 | 0.0539 (18) | 0.0454 (18) | 0.0209 (12) | 0.0153 (15) | −0.0006 (11) | −0.0032 (12) |
C11 | 0.0350 (13) | 0.0221 (12) | 0.0260 (11) | −0.0042 (10) | 0.0035 (9) | −0.0055 (10) |
C12 | 0.0437 (15) | 0.0389 (15) | 0.0311 (13) | 0.0070 (13) | 0.0022 (11) | 0.0039 (11) |
C13 | 0.0549 (17) | 0.0533 (19) | 0.0288 (13) | 0.0034 (15) | 0.0119 (12) | 0.0065 (13) |
C14 | 0.0393 (15) | 0.0461 (17) | 0.0370 (14) | 0.0000 (13) | 0.0124 (11) | −0.0046 (13) |
C15 | 0.0362 (14) | 0.0424 (16) | 0.0379 (14) | 0.0048 (13) | 0.0024 (11) | −0.0014 (12) |
C16 | 0.0414 (14) | 0.0329 (14) | 0.0244 (11) | 0.0009 (12) | 0.0037 (10) | 0.0009 (10) |
C21 | 0.0357 (13) | 0.0242 (12) | 0.0229 (11) | 0.0001 (11) | 0.0060 (9) | 0.0038 (9) |
C22 | 0.0324 (13) | 0.0269 (13) | 0.0320 (12) | 0.0010 (11) | −0.0028 (10) | −0.0006 (10) |
C23 | 0.0425 (15) | 0.0295 (14) | 0.0417 (14) | 0.0065 (12) | −0.0018 (12) | 0.0001 (12) |
C24 | 0.0337 (14) | 0.0449 (17) | 0.0400 (14) | 0.0060 (13) | −0.0009 (11) | 0.0090 (13) |
C25 | 0.0338 (14) | 0.0526 (18) | 0.0343 (13) | −0.0098 (13) | −0.0006 (11) | −0.0007 (13) |
C26 | 0.0465 (15) | 0.0309 (14) | 0.0287 (12) | −0.0108 (12) | 0.0078 (11) | −0.0039 (11) |
C31 | 0.059 (2) | 0.104 (3) | 0.060 (2) | 0.048 (2) | −0.0056 (17) | −0.011 (2) |
C32 | 0.030 (3) | 0.085 (5) | 0.051 (3) | 0.008 (3) | −0.005 (3) | −0.014 (3) |
C32B | 0.035 (3) | 0.081 (6) | 0.061 (4) | 0.010 (4) | 0.004 (3) | 0.024 (4) |
C41 | 0.102 (3) | 0.053 (2) | 0.0321 (15) | 0.002 (2) | 0.0242 (16) | −0.0109 (14) |
C42 | 0.115 (3) | 0.082 (3) | 0.068 (2) | 0.019 (3) | 0.041 (2) | −0.011 (2) |
N1 | 0.0364 (11) | 0.0226 (10) | 0.0265 (10) | 0.0002 (9) | 0.0063 (8) | −0.0030 (8) |
O1 | 0.0856 (17) | 0.0391 (13) | 0.0525 (13) | 0.0256 (12) | 0.0007 (11) | −0.0037 (10) |
O2 | 0.0466 (12) | 0.0626 (15) | 0.0481 (12) | 0.0262 (11) | −0.0087 (9) | −0.0141 (11) |
O3 | 0.0867 (16) | 0.0475 (13) | 0.0407 (11) | −0.0182 (13) | 0.0234 (11) | −0.0123 (10) |
O4 | 0.0759 (15) | 0.0480 (13) | 0.0296 (9) | −0.0057 (11) | 0.0112 (9) | −0.0109 (9) |
C1—N1 | 1.460 (3) | C21—C22 | 1.392 (3) |
C1—C11 | 1.515 (3) | C22—C23 | 1.382 (3) |
C1—H1A | 0.9700 | C22—H22 | 0.9300 |
C1—H1B | 0.9700 | C23—C24 | 1.383 (4) |
C2—N1 | 1.475 (3) | C23—H23 | 0.9300 |
C2—C21 | 1.522 (3) | C24—C25 | 1.373 (4) |
C2—C4 | 1.533 (3) | C24—H24 | 0.9300 |
C2—H2 | 0.9800 | C25—C26 | 1.380 (4) |
C3—N1 | 1.464 (3) | C25—H25 | 0.9300 |
C3—H3A | 0.9600 | C26—H26 | 0.9300 |
C3—H3B | 0.9600 | C31—C32 | 1.357 (6) |
C3—H3C | 0.9600 | C31—C32B | 1.412 (7) |
C4—C5 | 1.521 (4) | C31—O2 | 1.457 (4) |
C4—C6 | 1.528 (4) | C31—H31A | 0.9700 |
C4—H4 | 0.9800 | C31—H31B | 0.9700 |
C5—O3 | 1.192 (3) | C31—H31C | 0.9700 |
C5—O4 | 1.323 (3) | C31—H31D | 0.9700 |
C6—O1 | 1.192 (3) | C32—H31C | 1.2600 |
C6—O2 | 1.327 (4) | C32—H32A | 0.9600 |
C11—C12 | 1.382 (3) | C32—H32B | 0.9600 |
C11—C16 | 1.385 (3) | C32—H32C | 0.9600 |
C12—C13 | 1.390 (4) | C32B—H32D | 0.9600 |
C12—H12 | 0.9300 | C32B—H32E | 0.9600 |
C13—C14 | 1.370 (4) | C32B—H32F | 0.9600 |
C13—H13 | 0.9300 | C41—O4 | 1.454 (3) |
C14—C15 | 1.378 (4) | C41—C42 | 1.497 (5) |
C14—H14 | 0.9300 | C41—H41A | 0.9700 |
C15—C16 | 1.381 (4) | C41—H41B | 0.9700 |
C15—H15 | 0.9300 | C42—H42A | 0.9600 |
C16—H16 | 0.9300 | C42—H42B | 0.9600 |
C21—C26 | 1.392 (3) | C42—H42C | 0.9600 |
N1—C1—C11 | 110.89 (19) | C23—C24—H24 | 120.2 |
N1—C1—H1A | 109.5 | C24—C25—C26 | 120.0 (2) |
C11—C1—H1A | 109.5 | C24—C25—H25 | 120.0 |
N1—C1—H1B | 109.5 | C26—C25—H25 | 120.0 |
C11—C1—H1B | 109.5 | C25—C26—C21 | 121.5 (2) |
H1A—C1—H1B | 108.0 | C25—C26—H26 | 119.3 |
N1—C2—C21 | 116.50 (19) | C21—C26—H26 | 119.3 |
N1—C2—C4 | 107.57 (19) | C32—C31—C32B | 51.0 (4) |
C21—C2—C4 | 112.69 (19) | C32—C31—O2 | 108.7 (4) |
N1—C2—H2 | 106.5 | C32B—C31—O2 | 115.3 (4) |
C21—C2—H2 | 106.5 | C32—C31—H31A | 110.0 |
C4—C2—H2 | 106.5 | C32B—C31—H31A | 134.6 |
N1—C3—H3A | 109.5 | O2—C31—H31A | 110.0 |
N1—C3—H3B | 109.5 | C32—C31—H31B | 110.0 |
H3A—C3—H3B | 109.5 | C32B—C31—H31B | 60.1 |
N1—C3—H3C | 109.5 | O2—C31—H31B | 110.0 |
H3A—C3—H3C | 109.5 | H31A—C31—H31B | 108.3 |
H3B—C3—H3C | 109.5 | C32—C31—H31C | 63.0 |
C5—C4—C6 | 108.6 (2) | C32B—C31—H31C | 108.5 |
C5—C4—C2 | 111.5 (2) | O2—C31—H31C | 108.5 |
C6—C4—C2 | 107.79 (19) | H31A—C31—H31C | 50.3 |
C5—C4—H4 | 109.6 | H31B—C31—H31C | 140.9 |
C6—C4—H4 | 109.6 | C32—C31—H31D | 142.7 |
C2—C4—H4 | 109.6 | C32B—C31—H31D | 108.4 |
O3—C5—O4 | 125.0 (2) | O2—C31—H31D | 108.5 |
O3—C5—C4 | 125.2 (2) | H31A—C31—H31D | 59.1 |
O4—C5—C4 | 109.8 (2) | H31B—C31—H31D | 52.9 |
O1—C6—O2 | 125.4 (3) | H31C—C31—H31D | 107.5 |
O1—C6—C4 | 125.0 (3) | C31—C32—H31C | 43.3 |
O2—C6—C4 | 109.6 (2) | C31—C32—H32A | 109.5 |
C12—C11—C16 | 118.6 (2) | H31C—C32—H32A | 98.3 |
C12—C11—C1 | 121.4 (2) | C31—C32—H32B | 109.5 |
C16—C11—C1 | 119.9 (2) | H31C—C32—H32B | 74.8 |
C11—C12—C13 | 120.6 (2) | C31—C32—H32C | 109.5 |
C11—C12—H12 | 119.7 | H31C—C32—H32C | 147.7 |
C13—C12—H12 | 119.7 | C31—C32B—H32D | 109.5 |
C14—C13—C12 | 120.2 (2) | C31—C32B—H32E | 109.5 |
C14—C13—H13 | 119.9 | H32D—C32B—H32E | 109.5 |
C12—C13—H13 | 119.9 | C31—C32B—H32F | 109.5 |
C13—C14—C15 | 119.6 (2) | H32D—C32B—H32F | 109.5 |
C13—C14—H14 | 120.2 | H32E—C32B—H32F | 109.5 |
C15—C14—H14 | 120.2 | O4—C41—C42 | 108.5 (3) |
C14—C15—C16 | 120.3 (3) | O4—C41—H41A | 110.0 |
C14—C15—H15 | 119.9 | C42—C41—H41A | 110.0 |
C16—C15—H15 | 119.9 | O4—C41—H41B | 110.0 |
C15—C16—C11 | 120.7 (2) | C42—C41—H41B | 110.0 |
C15—C16—H16 | 119.6 | H41A—C41—H41B | 108.4 |
C11—C16—H16 | 119.6 | C41—C42—H42A | 109.5 |
C26—C21—C22 | 117.9 (2) | C41—C42—H42B | 109.5 |
C26—C21—C2 | 119.5 (2) | H42A—C42—H42B | 109.5 |
C22—C21—C2 | 122.6 (2) | C41—C42—H42C | 109.5 |
C23—C22—C21 | 120.5 (2) | H42A—C42—H42C | 109.5 |
C23—C22—H22 | 119.7 | H42B—C42—H42C | 109.5 |
C21—C22—H22 | 119.7 | C1—N1—C3 | 110.74 (19) |
C22—C23—C24 | 120.6 (3) | C1—N1—C2 | 113.09 (19) |
C22—C23—H23 | 119.7 | C3—N1—C2 | 114.98 (19) |
C24—C23—H23 | 119.7 | C6—O2—C31 | 116.5 (3) |
C25—C24—C23 | 119.5 (3) | C5—O4—C41 | 118.2 (2) |
C25—C24—H24 | 120.2 |
D—H···A | D—H | H···A | D···A | D—H···A |
C32—H32A···O3i | 0.96 | 2.38 | 3.273 (3) | 155 |
Symmetry code: (i) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C22H27NO4 |
Mr | 369.45 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 9.3074 (2), 5.9077 (1), 37.0971 (7) |
β (°) | 92.999 (1) |
V (Å3) | 2037.00 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.24 × 0.20 × 0.13 |
Data collection | |
Diffractometer | Bruker X8 APEXII CCD area-detector diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 25575, 4138, 3411 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.070, 0.159, 1.25 |
No. of reflections | 4138 |
No. of parameters | 257 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.27, −0.26 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C32—H32A···O3i | 0.96 | 2.38 | 3.273 (3) | 155 |
Symmetry code: (i) x−1, y, z. |
Acknowledgements
This work was supported by grants from Project PGR-UMP-BH-2005, the Centre National de Recherche Scientifique, CNRS (France) and the Centre National pour la Recherche Scientifique et Technique, CNRST (Morocco).
References
Allen, F. H., Kennard, O., Watson, D. G., Brammmer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2. pp. S1–19. CrossRef Google Scholar
Bruker (2005). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Dayam, R., Al-Mawsawi, L. Q. & Neamati, N. (2007). Bioorg. Med. Chem. Lett. 17, 6155–6159. Web of Science CrossRef PubMed CAS Google Scholar
Patil, S., Kamath, S., Sanchez, T., Neamati, N., Schinazi, R. F. & Buolamwini, J. K. (2007). Bioorg. Med. Chem. 15, 1212–1228. Web of Science CrossRef PubMed CAS Google Scholar
Pommier, Y. & Neamati, N. (2006). Bioorg. Med. Chem. 14, 3785–3792. Web of Science PubMed Google Scholar
Ramkumar, K., Tambov, K. V., Gundla, R., Manaev, A. V., Yarovenko, V., Traven, V. F. & Neamati, N. (2008). Bioorg. Med. Chem. 16, 8988–8998. Web of Science CrossRef PubMed CAS Google Scholar
Sechi, M., Carta, F., Sannia, L., Dallocchio, R., Dessì, A., Al-Safi, R. I. & Neamati, N. (2009a). Antivir. Res. 81, 267–276. CrossRef PubMed CAS Google Scholar
Sechi, M., Rizzi, G., Bacchi, A., Carcelli, M., Rogolino, D., Pala, N., Sanchez, T. W., Taheri, L., Dayam, R. & Neamati, N. (2009b). Bioorg. Med. Chem. 17, 2925–2935. Web of Science CSD CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). publCIF. In preparation. Google Scholar
Zeng, L. F., Jiang, X. H., Sanchez, T., Zhang, H. S., Dayam, R., Neamati, N. & Long, Y. Q. (2008b). Bioorg. Med. Chem. 16, 7777–7787. Web of Science CrossRef PubMed CAS Google Scholar
Zeng, L. F., Zhang, H.-S., Wang, Y. H., Sanchez, T., Zheng, Y. T., Neamati, N. & Long, Y. Q. (2008a). Bioorg. Med. Chem. Lett. 18, 4521–4524. Web of Science CrossRef PubMed CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The rational design of new HIV-1 Integrase (H—I) inhibitors, one validated target for chemotherapeutic intervention (Dayam et al., 2007), is fundamentally based on intermolecular coordination between H—I / chemical inhibitor / metals (Mg+2 and Mn+2, co-factors of the enzyme), leading in the formation of bimetallic complexes (Zeng et al., 2008a; Sechi et al., 2009a). Thereby, several bimetallic metal complexes, in many cases exploring the known-well polydentate ligands, appear in this scenario as the most promising concept to employ in either enzyme / drug interaction or electron transfer process, in the later case involving the biological oxygen transfer (Sechi et al., 2009b; Ramkumar et al., 2008). Another exciting example of application of such polydentate ligand involves the synergic water activation, that occurs via the so-called, remote metallic atoms. Such organometallic compounds are structurally deemed to promote or block the H—I activity (Zeng et al., 2008b). The explanations given above clearly demonstrate that polydentate ligands are of special interest in the bioorganometallic chemistry (Patil et al., 2007). Looking for the design of new bimetallic coordinating ligands to further explore in the building of intermolecular system involving H—I/ inhibitor/ metal complexation, we have targeted to study the crystallographic structure of a polydendate malonate N,O,O-ligand, the title compound (I).
In the molecule of (I) (Fig. 1), the benzene rings (C11—C16) and (C21—C26) are planar, with r.m.s deviation of 0.003 (3) Å and 0.009 (2) Å, respectively. The dihedral angle between the planes of these rings is 73.54 (13)°. The planes of the two carbonyl groups (O1,O2,C6) and (O3,O4,C5) are twisted by dihedral angles of 66.0 (3)° and 67.2 (3)°, respectively, with respect to (C4,C2,C21,N1) plane.
The Bond lengths and angles in the title compound have normal values (Allen et al., 1987). The only significant intermolecular interaction in (I), as identified by PLATON (Spek, 2003) is a C32—H32A···O3 H-bond (Table 1).