organic compounds
Vieillardiixanthone B†
aCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: suchada.c@psu.ac.th
The title compound [systematic name: 1,5-dihydroxy-3,6-dimethoxy-4-(2-methylbut-3-en-2-yl)-9H-xanthen-9-one], C20H20O6, is a xanthone, which was isolated from the roots of Cratoxylum formosum ssp. pruniflorum. The three rings in the molecule are approximately coplanar, with an r.m.s. deviation of 0.0372 (2) Å for the plane through the 14 non-H atoms. The O atoms of the two hydroxy substituents also lie close to this plane with deviations of 0.0669 (2) and 0.1122 (2) Å, respectively. The 1,1-dimethyl-2-propenyl substituent is in a (−)-anticlinal conformation. Intramolecular O—H⋯O hydrogen bonds generate S(5) and S(6) ring motifs. In the crystal, molecules are linked into infinite chains along [010] by O—H⋯O hydrogen bonds and weak C—H⋯O interactions. π–π interactions with centroid–centroid distances of 3.6172 (10) and 3.6815 (10) Å are also observed.
Related literature
For hydrogen-bond motifs, see: Bernstein et al. (1995). For bond-length data, see: Allen et al. (1987). For background to xanthones and their biological activity, see: Boonnak, Karalai et al. (2006, 2007, 2009); Hay et al. (2008). For a related structure, see: Boonnak, Chantrapromma & Fun (2006). For the stability of the temperature controller used in the data collection, see Cosier & Glazer, (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810007026/sj2732sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810007026/sj2732Isup2.hkl
The air-dried roots of C. formosum ssp. pruniflorum (5.00 kg) was extracted with CH2Cl2 (2 x 20 L, for a week) at room temperature and was further evaporated under reduced pressure to afford a deep green crude CH2Cl2 extract (58.87 g), which was subjected to QCC (Quick Column Chromatography) on silica gel using n-hexane as a first
and then increasing the polarity with acetone to give 12 fractions (F1-F12). Fractions F8-F11 were combined and separated by QCC eluting with 30% EtOAc-n-hexane to give 8 subfractions (F8A-F8H). Subfractions F8E and F8F were combined and separated by QCC and eluted with 30% EtOAc-n-hexane to obtain 20 subfractions (F8E1-F8E20). Subfractions F8E10-F8E12 were combined and separated by QCC and eluted with a gradient of CH2Cl2-n-hexane to give 12 subfractions (F8E10A-F8E10L). Subfraction F8E10D was separated by CC (Column Chromatography) eluting with 10% acetone-n-hexane to give 8 subfractions (F8E10D1-F8E10D8). Subfraction F8E10D5 was further purified by CC and eluted with a gradient of CH2Cl2-n-hexane to give the title compound as a yellow solid (3.5 mg). Yellow block-shaped single crystals of the title compound suitable for x-ray were recrystallized from acetone/CH3OH (9.5:0.5, v/v) after several days (M.p. 486-488 K).Hydroxy H atoms attached to O3 and O5 and H atoms attached to C18 and C19 were located from the difference map and refined isotropically. The remaining H atoms were placed in calculated positions with d(C—H) = 0.93 Å for aromatic and 0.96 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the
for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 0.72 Å from C15 and the deepest hole is located at 0.72 Å from C5.Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C20H20O6 | F(000) = 752 |
Mr = 356.36 | Dx = 1.389 Mg m−3 |
Monoclinic, P21/c | Melting point = 486–488 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 12.1500 (4) Å | Cell parameters from 3906 reflections |
b = 14.7396 (4) Å | θ = 2.2–27.5° |
c = 9.5177 (3) Å | µ = 0.10 mm−1 |
β = 90.208 (2)° | T = 100 K |
V = 1704.48 (9) Å3 | Block, yellow |
Z = 4 | 0.50 × 0.23 × 0.22 mm |
Bruker APEXII CCD area-detector diffractometer | 3906 independent reflections |
Radiation source: sealed tube | 2682 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.071 |
ϕ and ω scans | θmax = 27.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −15→15 |
Tmin = 0.951, Tmax = 0.978 | k = −19→19 |
37868 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0609P)2 + 0.5536P] where P = (Fo2 + 2Fc2)/3 |
3906 reflections | (Δ/σ)max < 0.001 |
259 parameters | Δρmax = 0.27 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C20H20O6 | V = 1704.48 (9) Å3 |
Mr = 356.36 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.1500 (4) Å | µ = 0.10 mm−1 |
b = 14.7396 (4) Å | T = 100 K |
c = 9.5177 (3) Å | 0.50 × 0.23 × 0.22 mm |
β = 90.208 (2)° |
Bruker APEXII CCD area-detector diffractometer | 3906 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2682 reflections with I > 2σ(I) |
Tmin = 0.951, Tmax = 0.978 | Rint = 0.071 |
37868 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.27 e Å−3 |
3906 reflections | Δρmin = −0.27 e Å−3 |
259 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.35090 (10) | 0.13014 (8) | 0.63535 (13) | 0.0187 (3) | |
O2 | 0.37354 (10) | 0.40673 (8) | 0.61270 (13) | 0.0207 (3) | |
O3 | 0.21931 (11) | 0.40714 (8) | 0.42914 (14) | 0.0230 (3) | |
H1O3 | 0.278 (2) | 0.4208 (18) | 0.491 (3) | 0.055 (8)* | |
O4 | 0.07417 (11) | 0.12110 (9) | 0.29203 (14) | 0.0257 (3) | |
O5 | 0.46803 (11) | 0.02998 (8) | 0.80738 (14) | 0.0202 (3) | |
H1O5 | 0.522 (2) | 0.0062 (16) | 0.847 (2) | 0.038 (7)* | |
O6 | 0.62914 (11) | 0.10303 (8) | 0.96779 (14) | 0.0222 (3) | |
C1 | 0.21969 (15) | 0.31542 (12) | 0.43964 (19) | 0.0186 (4) | |
C2 | 0.14722 (15) | 0.26604 (12) | 0.35834 (19) | 0.0195 (4) | |
H2A | 0.0986 | 0.2956 | 0.2981 | 0.023* | |
C3 | 0.14717 (15) | 0.17086 (12) | 0.36683 (19) | 0.0187 (4) | |
C4 | 0.22012 (14) | 0.12173 (12) | 0.45343 (19) | 0.0176 (4) | |
C5 | 0.48867 (15) | 0.12058 (11) | 0.80499 (19) | 0.0174 (4) | |
C6 | 0.56984 (15) | 0.16161 (12) | 0.88664 (19) | 0.0188 (4) | |
C7 | 0.58547 (16) | 0.25558 (12) | 0.8834 (2) | 0.0201 (4) | |
H7A | 0.6400 | 0.2822 | 0.9385 | 0.024* | |
C8 | 0.51960 (15) | 0.30887 (12) | 0.79793 (19) | 0.0202 (4) | |
H8A | 0.5291 | 0.3715 | 0.7972 | 0.024* | |
C9 | 0.36821 (15) | 0.32157 (11) | 0.62009 (18) | 0.0171 (4) | |
C10 | 0.29140 (14) | 0.27097 (11) | 0.53441 (19) | 0.0168 (4) | |
C11 | 0.28714 (14) | 0.17552 (12) | 0.53963 (19) | 0.0166 (4) | |
C12 | 0.42547 (14) | 0.17531 (12) | 0.71676 (18) | 0.0166 (4) | |
C13 | 0.43899 (15) | 0.26940 (11) | 0.71284 (19) | 0.0174 (4) | |
C14 | 0.00024 (16) | 0.16425 (14) | 0.1967 (2) | 0.0265 (5) | |
H14A | −0.0397 | 0.1190 | 0.1449 | 0.040* | |
H14B | 0.0411 | 0.2015 | 0.1328 | 0.040* | |
H14C | −0.0505 | 0.2013 | 0.2483 | 0.040* | |
C15 | 0.22616 (15) | 0.01618 (12) | 0.45818 (19) | 0.0184 (4) | |
C16 | 0.34762 (16) | −0.01610 (12) | 0.4569 (2) | 0.0221 (4) | |
H16A | 0.3505 | −0.0789 | 0.4305 | 0.033* | |
H16B | 0.3791 | −0.0087 | 0.5488 | 0.033* | |
H16C | 0.3885 | 0.0193 | 0.3904 | 0.033* | |
C17 | 0.16997 (17) | −0.01792 (12) | 0.5923 (2) | 0.0250 (4) | |
H17A | 0.0927 | −0.0044 | 0.5879 | 0.038* | |
H17B | 0.2020 | 0.0116 | 0.6726 | 0.038* | |
H17C | 0.1801 | −0.0823 | 0.6004 | 0.038* | |
C18 | 0.17864 (16) | −0.02757 (12) | 0.3267 (2) | 0.0223 (4) | |
H18 | 0.2133 (17) | −0.0069 (14) | 0.240 (2) | 0.028 (6)* | |
C19 | 0.10821 (18) | −0.09584 (14) | 0.3216 (3) | 0.0316 (5) | |
H19B | 0.0844 (17) | −0.1203 (14) | 0.231 (2) | 0.030 (6)* | |
H19A | 0.0703 (18) | −0.1196 (15) | 0.407 (2) | 0.038 (6)* | |
C20 | 0.72165 (16) | 0.13735 (13) | 1.0432 (2) | 0.0256 (5) | |
H20A | 0.7565 | 0.0888 | 1.0937 | 0.038* | |
H20B | 0.6977 | 0.1830 | 1.1082 | 0.038* | |
H20C | 0.7731 | 0.1634 | 0.9784 | 0.038* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0254 (7) | 0.0110 (6) | 0.0195 (7) | −0.0006 (5) | −0.0059 (6) | 0.0008 (5) |
O2 | 0.0294 (7) | 0.0091 (6) | 0.0236 (7) | −0.0007 (5) | −0.0048 (6) | 0.0011 (5) |
O3 | 0.0304 (8) | 0.0116 (6) | 0.0270 (8) | 0.0018 (5) | −0.0076 (6) | 0.0025 (6) |
O4 | 0.0277 (8) | 0.0176 (7) | 0.0317 (8) | −0.0013 (5) | −0.0153 (6) | 0.0021 (6) |
O5 | 0.0266 (8) | 0.0089 (6) | 0.0251 (7) | −0.0005 (5) | −0.0072 (6) | 0.0011 (5) |
O6 | 0.0281 (7) | 0.0123 (6) | 0.0259 (7) | −0.0004 (5) | −0.0115 (6) | 0.0017 (5) |
C1 | 0.0246 (10) | 0.0113 (8) | 0.0199 (10) | 0.0003 (7) | 0.0024 (8) | 0.0016 (7) |
C2 | 0.0219 (10) | 0.0171 (9) | 0.0195 (10) | 0.0023 (7) | −0.0041 (8) | 0.0029 (7) |
C3 | 0.0220 (10) | 0.0165 (9) | 0.0177 (9) | −0.0014 (7) | −0.0019 (8) | 0.0002 (7) |
C4 | 0.0214 (10) | 0.0131 (8) | 0.0183 (9) | 0.0001 (7) | 0.0005 (8) | 0.0013 (7) |
C5 | 0.0233 (10) | 0.0100 (8) | 0.0188 (9) | 0.0000 (7) | 0.0004 (8) | −0.0003 (7) |
C6 | 0.0229 (10) | 0.0150 (9) | 0.0185 (10) | 0.0016 (7) | −0.0042 (8) | 0.0008 (7) |
C7 | 0.0254 (10) | 0.0130 (9) | 0.0219 (10) | −0.0024 (7) | −0.0048 (8) | −0.0023 (8) |
C8 | 0.0280 (10) | 0.0100 (8) | 0.0225 (10) | 0.0003 (7) | −0.0009 (8) | −0.0002 (7) |
C9 | 0.0225 (10) | 0.0125 (8) | 0.0164 (9) | 0.0002 (7) | 0.0017 (8) | −0.0001 (7) |
C10 | 0.0210 (9) | 0.0117 (8) | 0.0177 (9) | 0.0007 (7) | −0.0011 (8) | −0.0007 (7) |
C11 | 0.0199 (9) | 0.0132 (8) | 0.0167 (9) | 0.0020 (7) | −0.0011 (8) | 0.0024 (7) |
C12 | 0.0195 (9) | 0.0141 (9) | 0.0162 (9) | −0.0010 (7) | −0.0022 (7) | −0.0023 (7) |
C13 | 0.0228 (10) | 0.0122 (8) | 0.0172 (9) | −0.0003 (7) | −0.0008 (8) | −0.0010 (7) |
C14 | 0.0279 (11) | 0.0258 (10) | 0.0256 (11) | −0.0033 (8) | −0.0101 (9) | 0.0040 (9) |
C15 | 0.0234 (10) | 0.0118 (8) | 0.0201 (10) | −0.0012 (7) | −0.0023 (8) | 0.0008 (7) |
C16 | 0.0289 (11) | 0.0115 (8) | 0.0258 (10) | −0.0002 (7) | −0.0029 (8) | −0.0021 (8) |
C17 | 0.0343 (11) | 0.0147 (9) | 0.0262 (10) | −0.0024 (8) | 0.0029 (9) | 0.0020 (8) |
C18 | 0.0259 (10) | 0.0155 (9) | 0.0255 (10) | 0.0021 (8) | −0.0032 (9) | −0.0012 (8) |
C19 | 0.0346 (12) | 0.0218 (10) | 0.0384 (13) | −0.0040 (9) | −0.0087 (11) | −0.0066 (10) |
C20 | 0.0266 (11) | 0.0205 (10) | 0.0295 (11) | 0.0007 (8) | −0.0121 (9) | −0.0006 (8) |
O1—C12 | 1.364 (2) | C8—H8A | 0.9300 |
O1—C11 | 1.368 (2) | C9—C10 | 1.445 (2) |
O2—C9 | 1.259 (2) | C9—C13 | 1.451 (2) |
O3—C1 | 1.356 (2) | C10—C11 | 1.409 (2) |
O3—H1O3 | 0.94 (3) | C12—C13 | 1.397 (2) |
O4—C3 | 1.352 (2) | C14—H14A | 0.9600 |
O4—C14 | 1.424 (2) | C14—H14B | 0.9600 |
O5—C5 | 1.359 (2) | C14—H14C | 0.9600 |
O5—H1O5 | 0.83 (3) | C15—C18 | 1.520 (3) |
O6—C6 | 1.363 (2) | C15—C17 | 1.535 (3) |
O6—C20 | 1.424 (2) | C15—C16 | 1.551 (3) |
C1—C2 | 1.378 (3) | C16—H16A | 0.9600 |
C1—C10 | 1.413 (2) | C16—H16B | 0.9600 |
C2—C3 | 1.405 (2) | C16—H16C | 0.9600 |
C2—H2A | 0.9300 | C17—H17A | 0.9600 |
C3—C4 | 1.409 (2) | C17—H17B | 0.9600 |
C4—C11 | 1.400 (2) | C17—H17C | 0.9600 |
C4—C15 | 1.558 (2) | C18—C19 | 1.322 (3) |
C5—C6 | 1.392 (3) | C18—H18 | 0.97 (2) |
C5—C12 | 1.393 (2) | C19—H19B | 0.98 (2) |
C6—C7 | 1.398 (2) | C19—H19A | 1.00 (2) |
C7—C8 | 1.383 (3) | C20—H20A | 0.9600 |
C7—H7A | 0.9300 | C20—H20B | 0.9600 |
C8—C13 | 1.396 (3) | C20—H20C | 0.9600 |
C12—O1—C11 | 120.87 (13) | C5—C12—C13 | 121.75 (16) |
C1—O3—H1O3 | 99.5 (16) | C8—C13—C12 | 118.73 (16) |
C3—O4—C14 | 120.28 (15) | C8—C13—C9 | 123.04 (16) |
C5—O5—H1O5 | 106.1 (16) | C12—C13—C9 | 118.23 (16) |
C6—O6—C20 | 118.38 (13) | O4—C14—H14A | 109.5 |
O3—C1—C2 | 118.90 (16) | O4—C14—H14B | 109.5 |
O3—C1—C10 | 120.77 (16) | H14A—C14—H14B | 109.5 |
C2—C1—C10 | 120.32 (16) | O4—C14—H14C | 109.5 |
C1—C2—C3 | 119.70 (17) | H14A—C14—H14C | 109.5 |
C1—C2—H2A | 120.2 | H14B—C14—H14C | 109.5 |
C3—C2—H2A | 120.2 | C18—C15—C17 | 112.15 (15) |
O4—C3—C2 | 120.79 (16) | C18—C15—C16 | 102.82 (14) |
O4—C3—C4 | 116.07 (15) | C17—C15—C16 | 109.42 (15) |
C2—C3—C4 | 123.13 (17) | C18—C15—C4 | 112.47 (15) |
C11—C4—C3 | 114.54 (16) | C17—C15—C4 | 109.27 (14) |
C11—C4—C15 | 121.41 (15) | C16—C15—C4 | 110.54 (14) |
C3—C4—C15 | 124.04 (16) | C15—C16—H16A | 109.5 |
O5—C5—C6 | 123.24 (16) | C15—C16—H16B | 109.5 |
O5—C5—C12 | 118.53 (16) | H16A—C16—H16B | 109.5 |
C6—C5—C12 | 118.23 (16) | C15—C16—H16C | 109.5 |
O6—C6—C5 | 114.41 (15) | H16A—C16—H16C | 109.5 |
O6—C6—C7 | 124.65 (16) | H16B—C16—H16C | 109.5 |
C5—C6—C7 | 120.93 (17) | C15—C17—H17A | 109.5 |
C8—C7—C6 | 119.81 (17) | C15—C17—H17B | 109.5 |
C8—C7—H7A | 120.1 | H17A—C17—H17B | 109.5 |
C6—C7—H7A | 120.1 | C15—C17—H17C | 109.5 |
C7—C8—C13 | 120.51 (16) | H17A—C17—H17C | 109.5 |
C7—C8—H8A | 119.7 | H17B—C17—H17C | 109.5 |
C13—C8—H8A | 119.7 | C19—C18—C15 | 126.7 (2) |
O2—C9—C10 | 121.10 (16) | C19—C18—H18 | 119.3 (12) |
O2—C9—C13 | 122.15 (16) | C15—C18—H18 | 113.4 (12) |
C10—C9—C13 | 116.75 (15) | C18—C19—H19B | 120.2 (13) |
C11—C10—C1 | 117.58 (16) | C18—C19—H19A | 122.6 (13) |
C11—C10—C9 | 121.29 (16) | H19B—C19—H19A | 116.8 (18) |
C1—C10—C9 | 121.10 (15) | O6—C20—H20A | 109.5 |
O1—C11—C4 | 116.11 (15) | O6—C20—H20B | 109.5 |
O1—C11—C10 | 119.40 (15) | H20A—C20—H20B | 109.5 |
C4—C11—C10 | 124.49 (16) | O6—C20—H20C | 109.5 |
O1—C12—C5 | 115.05 (15) | H20A—C20—H20C | 109.5 |
O1—C12—C13 | 123.19 (16) | H20B—C20—H20C | 109.5 |
O3—C1—C2—C3 | 179.39 (16) | C3—C4—C11—C10 | −5.7 (3) |
C10—C1—C2—C3 | −2.0 (3) | C15—C4—C11—C10 | 175.57 (17) |
C14—O4—C3—C2 | 3.8 (3) | C1—C10—C11—O1 | −176.47 (15) |
C14—O4—C3—C4 | −177.21 (16) | C9—C10—C11—O1 | 5.1 (3) |
C1—C2—C3—O4 | 177.55 (16) | C1—C10—C11—C4 | 2.8 (3) |
C1—C2—C3—C4 | −1.4 (3) | C9—C10—C11—C4 | −175.67 (17) |
O4—C3—C4—C11 | −174.00 (15) | C11—O1—C12—C5 | −177.07 (15) |
C2—C3—C4—C11 | 5.0 (3) | C11—O1—C12—C13 | 2.6 (2) |
O4—C3—C4—C15 | 4.7 (3) | O5—C5—C12—O1 | −2.9 (2) |
C2—C3—C4—C15 | −176.34 (17) | C6—C5—C12—O1 | 177.22 (15) |
C20—O6—C6—C5 | 173.27 (16) | O5—C5—C12—C13 | 177.41 (16) |
C20—O6—C6—C7 | −7.4 (3) | C6—C5—C12—C13 | −2.5 (3) |
O5—C5—C6—O6 | 1.3 (3) | C7—C8—C13—C12 | 0.6 (3) |
C12—C5—C6—O6 | −178.80 (15) | C7—C8—C13—C9 | −179.37 (17) |
O5—C5—C6—C7 | −178.04 (17) | O1—C12—C13—C8 | −178.41 (16) |
C12—C5—C6—C7 | 1.8 (3) | C5—C12—C13—C8 | 1.3 (3) |
O6—C6—C7—C8 | −179.31 (17) | O1—C12—C13—C9 | 1.6 (3) |
C5—C6—C7—C8 | 0.0 (3) | C5—C12—C13—C9 | −178.73 (16) |
C6—C7—C8—C13 | −1.2 (3) | O2—C9—C13—C8 | −1.6 (3) |
O3—C1—C10—C11 | 179.96 (16) | C10—C9—C13—C8 | 177.72 (16) |
C2—C1—C10—C11 | 1.3 (3) | O2—C9—C13—C12 | 178.43 (17) |
O3—C1—C10—C9 | −1.6 (3) | C10—C9—C13—C12 | −2.3 (2) |
C2—C1—C10—C9 | 179.76 (17) | C11—C4—C15—C18 | −160.22 (17) |
O2—C9—C10—C11 | 178.32 (17) | C3—C4—C15—C18 | 21.2 (2) |
C13—C9—C10—C11 | −1.0 (3) | C11—C4—C15—C17 | 74.6 (2) |
O2—C9—C10—C1 | −0.1 (3) | C3—C4—C15—C17 | −104.0 (2) |
C13—C9—C10—C1 | −179.36 (16) | C11—C4—C15—C16 | −45.9 (2) |
C12—O1—C11—C4 | 174.78 (15) | C3—C4—C15—C16 | 135.50 (18) |
C12—O1—C11—C10 | −5.9 (2) | C17—C15—C18—C19 | −8.8 (3) |
C3—C4—C11—O1 | 173.53 (15) | C16—C15—C18—C19 | 108.6 (2) |
C15—C4—C11—O1 | −5.2 (2) | C4—C15—C18—C19 | −132.5 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H1O3···O2 | 0.95 (3) | 1.65 (3) | 2.5573 (18) | 160 (2) |
O5—H1O5···O6 | 0.83 (2) | 2.25 (2) | 2.7019 (19) | 115 (2) |
O5—H1O5···O2i | 0.83 (2) | 1.98 (2) | 2.7520 (18) | 155 (2) |
C8—H8A···O5ii | 0.93 | 2.54 | 3.413 (2) | 157 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+1, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C20H20O6 |
Mr | 356.36 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 12.1500 (4), 14.7396 (4), 9.5177 (3) |
β (°) | 90.208 (2) |
V (Å3) | 1704.48 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.50 × 0.23 × 0.22 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.951, 0.978 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 37868, 3906, 2682 |
Rint | 0.071 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.133, 1.03 |
No. of reflections | 3906 |
No. of parameters | 259 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.27, −0.27 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H1O3···O2 | 0.95 (3) | 1.65 (3) | 2.5573 (18) | 160 (2) |
O5—H1O5···O6 | 0.83 (2) | 2.25 (2) | 2.7019 (19) | 115 (2) |
O5—H1O5···O2i | 0.83 (2) | 1.98 (2) | 2.7520 (18) | 155 (2) |
C8—H8A···O5ii | 0.93 | 2.54 | 3.413 (2) | 157 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x+1, y+1/2, −z+3/2. |
Acknowledgements
The authors thank the Thailand Research Fund (TRF) for research grant (RSA 5280033) and the Prince of Songkla University for financial support. They also thank Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012. NB thanks the Development and Promotion of Science and Technology Talents Project for a fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
During the course of our studies into the chemical constituents and bioactive compounds from Thai medicinal plants, we previously reported the isolation of xanthones from the Cratoxylum formosum ssp. pruniflorum. We found that several isolated xanthones showed antibacterial, antifungal and cytotoxic activities (Boonnak, Karalai et al., 2006; 2007; 2009). Further isolation of materials from the roots of this plant resulted in the title xanthone known as vieillardiixanthone B (Hay et al., 2008). It was tested against both Gram-positive and Gram-negative bacteria i.e. Bacillus subtilis, Staphylococcus aureus TISTR517, Enterococcus faecalis TISTR459, Methicillin-Resistant Staphylococcus aureus (MRSA) ATCC43300, Vancomycin-Risistant Enterococcus faecalis (VRE) ATCC 51299, Streptococcus faecalis, Salmonella typhi, Shigella sonei and Pseudomonas aeruginosa. Our results showed that the title compound has no antibacterial action against these pathogens. Herein we report the crystal structure of the title xanthone (I).
In compound (I) (Fig. 1), the three ring system [C1–C13/O1] is essentially planar with an r.m.s. deviation of 0.0372 (2) Å from the plane through all non-hydrogen atoms of the three rings and with a maximum deviation of -0.100 (2) Å for atom C4. The O3 and O5 hydroxyl O atoms lie close to this plane with deviations +0.0669 (2) for O3 and +0.1122 (2) Å for O5. The two methoxy groups lie close to the planes of their benzene rings with torsion angles C14–O4–C3–C2 = 3.8 (3)° and C20–O6–C6–C7 = -7.4 (3)°. The 1,1-dimethyl-2-propenyl [C15–C19] substituent is in a (-)-anticlinal conformation as indicated by the torsion angle C4–C15–C18–C19 = -132.1 (2)°. Intramolecular O3—H1O3···O2 and O5—H1O5..O6 hydrogen bonds (Table 1) generate S(6) and S(5) ring motifs, respectively (Bernstein et al., 1995). The bond distances in (I) are within normal ranges (Allen et al., 1987) and comparable to those in a related structure (Boonnak, Chantrapromma & Fun, 2006).
The crystal packing of (I) is stabilized by intermolecular O—H···O hydrogen bonds and weak C—H···O interactions (Table 1). The molecules are linked into infinite one dimensional chains along [010] by O—H···O and C—H···O hydrogen bonds (Fig. 2 and Table 1). π–π interactions with distances Cg1···Cg2 = 3.6172 (10) Å (symmetry code: x, 1/2-y, z) and Cg1···Cg3 = 3.6815 (10) Å (symmetry code: x, 1/2-y, -1/2+z) were also observed; Cg1, Cg2 and Cg3 are the centroids of O1/C9–C13, C1–C4/C10–C11 and C5–C8/C12–C13 rings, respectively.