organic compounds
Ethyl 1-sec-butyl-2-(4-methoxyphenyl)-1H-benzimidazole-5-carboxylate
aSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title molecule, C21H24N2O3, the dihedral angle between the benzene and imidazole rings is 66.33 (13)°. The imidazole ring is essentially planar, with a maximum deviation of 0.004 (2) Å. In the molecules are connected by weak C—H⋯O hydrogen bonds, forming chains along the b axis
Related literature
For the benzimidazole nucleus as a key building block for compounds showing biologically activity, see: Tanious et al. (2004). For the therapeutic properties of benzimidazole derivatives, see: Kohara et al. (1996); Mader et al. (2008). For 2-substituted-phenylbenzimidazoles with biological activity, see: Coburn et al. (1987); Roth et al. (1997).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810007634/tk2635sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810007634/tk2635Isup2.hkl
Ethyl-3-amino-4-(sec-butylamino)benzoate (200 mg, 0.84 mmol) and the sodium metabisulfite adduct of 4-methoxy benzaldehyde (406 mg, 1.68 mmol) were dissolved in DMF. The reaction mixture was irradiated under microwave conditions at 403 K for 2 minutes. After completion of the reaction, the reaction mixture was diluted in EtOAc (20 ml) and washed with H2O (20 ml). The organic layer was collected, dried over Na2SO4 and then evaporated in vacuo to yield the crude product. The product was recrystallized from hot EtOAc to afford the title compound as colorless crystals.
All hydrogen atoms were positioned geometrically [C–H = 0.93–0.98 Å] and were refined using a riding model, with Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating group model was applied to the methyl groups.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C21H24N2O3 | F(000) = 752 |
Mr = 352.42 | Dx = 1.212 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1865 reflections |
a = 10.5815 (3) Å | θ = 2.6–19.8° |
b = 12.1079 (3) Å | µ = 0.08 mm−1 |
c = 15.1050 (3) Å | T = 296 K |
β = 93.678 (2)° | Plate, colourless |
V = 1931.26 (8) Å3 | 0.40 × 0.31 × 0.07 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 4437 independent reflections |
Radiation source: fine-focus sealed tube | 2266 reflections with I > 2s(I) |
Graphite monochromator | Rint = 0.065 |
ϕ and ω scans | θmax = 27.5°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −13→13 |
Tmin = 0.968, Tmax = 0.994 | k = −15→15 |
19216 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.066 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.150 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0461P)2 + 0.4985P] where P = (Fo2 + 2Fc2)/3 |
4437 reflections | (Δ/σ)max < 0.001 |
235 parameters | Δρmax = 0.13 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
C21H24N2O3 | V = 1931.26 (8) Å3 |
Mr = 352.42 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.5815 (3) Å | µ = 0.08 mm−1 |
b = 12.1079 (3) Å | T = 296 K |
c = 15.1050 (3) Å | 0.40 × 0.31 × 0.07 mm |
β = 93.678 (2)° |
Bruker SMART APEXII CCD area-detector diffractometer | 4437 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2266 reflections with I > 2s(I) |
Tmin = 0.968, Tmax = 0.994 | Rint = 0.065 |
19216 measured reflections |
R[F2 > 2σ(F2)] = 0.066 | 0 restraints |
wR(F2) = 0.150 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.13 e Å−3 |
4437 reflections | Δρmin = −0.18 e Å−3 |
235 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.50185 (18) | 0.95365 (16) | 0.17576 (12) | 0.0728 (6) | |
O2 | 0.34173 (18) | 1.00924 (15) | 0.08352 (13) | 0.0735 (6) | |
O3 | −0.47540 (19) | 0.38119 (16) | 0.08035 (13) | 0.0761 (6) | |
N1 | 0.07745 (19) | 0.58199 (16) | 0.20122 (13) | 0.0503 (5) | |
N2 | 0.00579 (19) | 0.70718 (16) | 0.10000 (13) | 0.0532 (5) | |
C1 | −0.2515 (2) | 0.5992 (2) | 0.15122 (17) | 0.0587 (7) | |
H1A | −0.2505 | 0.6692 | 0.1767 | 0.070* | |
C2 | −0.3657 (3) | 0.5442 (2) | 0.13763 (16) | 0.0594 (7) | |
H2A | −0.4402 | 0.5765 | 0.1543 | 0.071* | |
C3 | −0.3678 (3) | 0.4410 (2) | 0.09909 (16) | 0.0570 (7) | |
C4 | −0.2565 (3) | 0.3940 (2) | 0.07547 (19) | 0.0696 (8) | |
H4A | −0.2578 | 0.3243 | 0.0495 | 0.084* | |
C5 | −0.1438 (3) | 0.4490 (2) | 0.08990 (18) | 0.0651 (8) | |
H5A | −0.0693 | 0.4159 | 0.0739 | 0.078* | |
C6 | −0.1391 (2) | 0.5534 (2) | 0.12809 (15) | 0.0491 (6) | |
C7 | −0.0199 (2) | 0.6160 (2) | 0.14217 (16) | 0.0481 (6) | |
C8 | 0.1732 (2) | 0.65916 (19) | 0.19625 (15) | 0.0478 (6) | |
C9 | 0.2938 (2) | 0.6692 (2) | 0.23777 (17) | 0.0598 (7) | |
H9A | 0.3260 | 0.6164 | 0.2779 | 0.072* | |
C10 | 0.3633 (2) | 0.7602 (2) | 0.21706 (17) | 0.0563 (7) | |
H10A | 0.4438 | 0.7693 | 0.2445 | 0.068* | |
C11 | 0.3174 (2) | 0.8402 (2) | 0.15602 (15) | 0.0485 (6) | |
C12 | 0.1987 (2) | 0.8284 (2) | 0.11322 (16) | 0.0509 (6) | |
H12A | 0.1677 | 0.8803 | 0.0720 | 0.061* | |
C13 | 0.1265 (2) | 0.73630 (19) | 0.13359 (15) | 0.0452 (6) | |
C14 | 0.3975 (3) | 0.9378 (2) | 0.14099 (17) | 0.0548 (7) | |
C15 | 0.4123 (3) | 1.1098 (2) | 0.0663 (2) | 0.0797 (9) | |
H15A | 0.4977 | 1.0918 | 0.0515 | 0.096* | |
H15B | 0.4170 | 1.1571 | 0.1183 | 0.096* | |
C16 | 0.3432 (3) | 1.1663 (3) | −0.0091 (2) | 0.0928 (10) | |
H16A | 0.3872 | 1.2328 | −0.0229 | 0.139* | |
H16B | 0.2592 | 1.1843 | 0.0067 | 0.139* | |
H16C | 0.3385 | 1.1184 | −0.0598 | 0.139* | |
C17 | 0.0678 (3) | 0.4949 (2) | 0.26963 (17) | 0.0600 (7) | |
H17A | −0.0174 | 0.4634 | 0.2602 | 0.072* | |
C18 | 0.0755 (3) | 0.5434 (3) | 0.36209 (18) | 0.0758 (9) | |
H18A | 0.0617 | 0.4847 | 0.4041 | 0.091* | |
H18B | 0.1605 | 0.5715 | 0.3751 | 0.091* | |
C19 | −0.0167 (3) | 0.6342 (3) | 0.3763 (2) | 0.0972 (11) | |
H19A | −0.0046 | 0.6609 | 0.4361 | 0.146* | |
H19B | −0.1015 | 0.6067 | 0.3662 | 0.146* | |
H19C | −0.0033 | 0.6934 | 0.3357 | 0.146* | |
C20 | 0.1589 (3) | 0.4015 (2) | 0.2570 (2) | 0.0830 (10) | |
H20A | 0.1475 | 0.3744 | 0.1973 | 0.124* | |
H20B | 0.1432 | 0.3430 | 0.2977 | 0.124* | |
H20C | 0.2442 | 0.4276 | 0.2678 | 0.124* | |
C21 | −0.5922 (3) | 0.4267 (3) | 0.1060 (2) | 0.0828 (10) | |
H21A | −0.6601 | 0.3767 | 0.0894 | 0.124* | |
H21B | −0.6072 | 0.4962 | 0.0766 | 0.124* | |
H21C | −0.5877 | 0.4376 | 0.1690 | 0.124* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0634 (13) | 0.0789 (14) | 0.0747 (13) | −0.0233 (11) | −0.0070 (11) | 0.0058 (10) |
O2 | 0.0746 (13) | 0.0553 (12) | 0.0884 (14) | −0.0213 (10) | −0.0109 (11) | 0.0173 (10) |
O3 | 0.0636 (13) | 0.0762 (14) | 0.0884 (14) | −0.0216 (11) | 0.0039 (10) | −0.0165 (11) |
N1 | 0.0537 (13) | 0.0410 (12) | 0.0558 (12) | −0.0019 (10) | −0.0002 (10) | 0.0107 (9) |
N2 | 0.0560 (14) | 0.0466 (12) | 0.0557 (13) | −0.0065 (10) | −0.0052 (10) | 0.0079 (10) |
C1 | 0.0655 (18) | 0.0428 (15) | 0.0685 (18) | −0.0067 (14) | 0.0085 (14) | −0.0055 (12) |
C2 | 0.0556 (17) | 0.0565 (17) | 0.0668 (17) | −0.0023 (14) | 0.0091 (13) | −0.0005 (14) |
C3 | 0.0616 (18) | 0.0545 (17) | 0.0547 (15) | −0.0136 (15) | 0.0015 (13) | −0.0006 (13) |
C4 | 0.0677 (19) | 0.0530 (17) | 0.088 (2) | −0.0092 (16) | 0.0052 (16) | −0.0216 (15) |
C5 | 0.0599 (18) | 0.0529 (17) | 0.083 (2) | −0.0005 (15) | 0.0062 (15) | −0.0119 (15) |
C6 | 0.0534 (16) | 0.0412 (14) | 0.0524 (14) | −0.0027 (13) | 0.0010 (12) | 0.0048 (12) |
C7 | 0.0520 (15) | 0.0425 (14) | 0.0498 (14) | −0.0003 (12) | 0.0039 (12) | 0.0028 (11) |
C8 | 0.0496 (15) | 0.0411 (14) | 0.0527 (14) | −0.0007 (12) | 0.0032 (12) | 0.0026 (11) |
C9 | 0.0554 (17) | 0.0533 (17) | 0.0699 (18) | 0.0026 (14) | −0.0035 (14) | 0.0114 (13) |
C10 | 0.0494 (16) | 0.0539 (17) | 0.0643 (17) | −0.0004 (13) | −0.0050 (13) | 0.0020 (13) |
C11 | 0.0500 (15) | 0.0440 (14) | 0.0516 (14) | −0.0031 (12) | 0.0050 (12) | −0.0023 (11) |
C12 | 0.0575 (16) | 0.0440 (15) | 0.0506 (14) | −0.0013 (13) | −0.0005 (12) | 0.0055 (11) |
C13 | 0.0492 (15) | 0.0399 (14) | 0.0462 (14) | 0.0016 (12) | 0.0002 (11) | 0.0005 (11) |
C14 | 0.0575 (17) | 0.0539 (17) | 0.0531 (16) | −0.0077 (14) | 0.0042 (14) | −0.0047 (13) |
C15 | 0.092 (2) | 0.0582 (19) | 0.087 (2) | −0.0277 (17) | −0.0076 (18) | 0.0144 (16) |
C16 | 0.111 (3) | 0.072 (2) | 0.095 (2) | −0.022 (2) | 0.003 (2) | 0.0107 (19) |
C17 | 0.0638 (17) | 0.0486 (15) | 0.0672 (18) | −0.0039 (14) | 0.0018 (14) | 0.0196 (13) |
C18 | 0.081 (2) | 0.083 (2) | 0.0640 (19) | −0.0050 (18) | 0.0050 (16) | 0.0213 (16) |
C19 | 0.108 (3) | 0.110 (3) | 0.074 (2) | 0.020 (2) | 0.0124 (19) | −0.008 (2) |
C20 | 0.079 (2) | 0.0545 (18) | 0.116 (3) | 0.0092 (17) | 0.0115 (19) | 0.0259 (17) |
C21 | 0.063 (2) | 0.107 (3) | 0.078 (2) | −0.0206 (19) | 0.0052 (16) | −0.0121 (19) |
O1—C14 | 1.208 (3) | C10—H10A | 0.9300 |
O2—C14 | 1.335 (3) | C11—C12 | 1.383 (3) |
O2—C15 | 1.461 (3) | C11—C14 | 1.481 (3) |
O3—C3 | 1.363 (3) | C12—C13 | 1.396 (3) |
O3—C21 | 1.429 (3) | C12—H12A | 0.9300 |
N1—C7 | 1.381 (3) | C15—C16 | 1.480 (4) |
N1—C8 | 1.384 (3) | C15—H15A | 0.9700 |
N1—C17 | 1.485 (3) | C15—H15B | 0.9700 |
N2—C7 | 1.312 (3) | C16—H16A | 0.9600 |
N2—C13 | 1.389 (3) | C16—H16B | 0.9600 |
C1—C6 | 1.377 (3) | C16—H16C | 0.9600 |
C1—C2 | 1.384 (3) | C17—C20 | 1.507 (4) |
C1—H1A | 0.9300 | C17—C18 | 1.512 (4) |
C2—C3 | 1.379 (4) | C17—H17A | 0.9800 |
C2—H2A | 0.9300 | C18—C19 | 1.495 (4) |
C3—C4 | 1.375 (4) | C18—H18A | 0.9700 |
C4—C5 | 1.372 (4) | C18—H18B | 0.9700 |
C4—H4A | 0.9300 | C19—H19A | 0.9600 |
C5—C6 | 1.389 (3) | C19—H19B | 0.9600 |
C5—H5A | 0.9300 | C19—H19C | 0.9600 |
C6—C7 | 1.475 (3) | C20—H20A | 0.9600 |
C8—C9 | 1.391 (3) | C20—H20B | 0.9600 |
C8—C13 | 1.397 (3) | C20—H20C | 0.9600 |
C9—C10 | 1.373 (3) | C21—H21A | 0.9600 |
C9—H9A | 0.9300 | C21—H21B | 0.9600 |
C10—C11 | 1.402 (3) | C21—H21C | 0.9600 |
C14—O2—C15 | 116.5 (2) | O1—C14—O2 | 122.2 (2) |
C3—O3—C21 | 117.7 (2) | O1—C14—C11 | 125.2 (3) |
C7—N1—C8 | 106.39 (19) | O2—C14—C11 | 112.6 (2) |
C7—N1—C17 | 125.4 (2) | O2—C15—C16 | 106.8 (2) |
C8—N1—C17 | 126.9 (2) | O2—C15—H15A | 110.4 |
C7—N2—C13 | 104.5 (2) | C16—C15—H15A | 110.4 |
C6—C1—C2 | 121.9 (2) | O2—C15—H15B | 110.4 |
C6—C1—H1A | 119.0 | C16—C15—H15B | 110.4 |
C2—C1—H1A | 119.0 | H15A—C15—H15B | 108.6 |
C3—C2—C1 | 119.3 (2) | C15—C16—H16A | 109.5 |
C3—C2—H2A | 120.3 | C15—C16—H16B | 109.5 |
C1—C2—H2A | 120.3 | H16A—C16—H16B | 109.5 |
O3—C3—C4 | 116.4 (2) | C15—C16—H16C | 109.5 |
O3—C3—C2 | 124.0 (3) | H16A—C16—H16C | 109.5 |
C4—C3—C2 | 119.6 (3) | H16B—C16—H16C | 109.5 |
C5—C4—C3 | 120.5 (3) | N1—C17—C20 | 111.8 (2) |
C5—C4—H4A | 119.7 | N1—C17—C18 | 111.4 (2) |
C3—C4—H4A | 119.7 | C20—C17—C18 | 114.3 (2) |
C4—C5—C6 | 121.0 (3) | N1—C17—H17A | 106.2 |
C4—C5—H5A | 119.5 | C20—C17—H17A | 106.2 |
C6—C5—H5A | 119.5 | C18—C17—H17A | 106.2 |
C1—C6—C5 | 117.6 (2) | C19—C18—C17 | 114.9 (2) |
C1—C6—C7 | 120.1 (2) | C19—C18—H18A | 108.5 |
C5—C6—C7 | 122.3 (2) | C17—C18—H18A | 108.5 |
N2—C7—N1 | 113.3 (2) | C19—C18—H18B | 108.5 |
N2—C7—C6 | 124.3 (2) | C17—C18—H18B | 108.5 |
N1—C7—C6 | 122.4 (2) | H18A—C18—H18B | 107.5 |
N1—C8—C9 | 133.5 (2) | C18—C19—H19A | 109.5 |
N1—C8—C13 | 105.1 (2) | C18—C19—H19B | 109.5 |
C9—C8—C13 | 121.4 (2) | H19A—C19—H19B | 109.5 |
C10—C9—C8 | 117.2 (2) | C18—C19—H19C | 109.5 |
C10—C9—H9A | 121.4 | H19A—C19—H19C | 109.5 |
C8—C9—H9A | 121.4 | H19B—C19—H19C | 109.5 |
C9—C10—C11 | 122.4 (2) | C17—C20—H20A | 109.5 |
C9—C10—H10A | 118.8 | C17—C20—H20B | 109.5 |
C11—C10—H10A | 118.8 | H20A—C20—H20B | 109.5 |
C12—C11—C10 | 120.2 (2) | C17—C20—H20C | 109.5 |
C12—C11—C14 | 121.5 (2) | H20A—C20—H20C | 109.5 |
C10—C11—C14 | 118.3 (2) | H20B—C20—H20C | 109.5 |
C11—C12—C13 | 118.2 (2) | O3—C21—H21A | 109.5 |
C11—C12—H12A | 120.9 | O3—C21—H21B | 109.5 |
C13—C12—H12A | 120.9 | H21A—C21—H21B | 109.5 |
N2—C13—C12 | 128.7 (2) | O3—C21—H21C | 109.5 |
N2—C13—C8 | 110.8 (2) | H21A—C21—H21C | 109.5 |
C12—C13—C8 | 120.5 (2) | H21B—C21—H21C | 109.5 |
C6—C1—C2—C3 | −0.6 (4) | C13—C8—C9—C10 | 2.4 (4) |
C21—O3—C3—C4 | 178.6 (2) | C8—C9—C10—C11 | −0.8 (4) |
C21—O3—C3—C2 | −2.9 (4) | C9—C10—C11—C12 | −0.8 (4) |
C1—C2—C3—O3 | −178.0 (2) | C9—C10—C11—C14 | 177.5 (2) |
C1—C2—C3—C4 | 0.5 (4) | C10—C11—C12—C13 | 0.9 (3) |
O3—C3—C4—C5 | 178.6 (3) | C14—C11—C12—C13 | −177.3 (2) |
C2—C3—C4—C5 | 0.0 (4) | C7—N2—C13—C12 | −178.3 (2) |
C3—C4—C5—C6 | −0.4 (4) | C7—N2—C13—C8 | 0.8 (3) |
C2—C1—C6—C5 | 0.2 (4) | C11—C12—C13—N2 | 179.7 (2) |
C2—C1—C6—C7 | 178.8 (2) | C11—C12—C13—C8 | 0.6 (3) |
C4—C5—C6—C1 | 0.3 (4) | N1—C8—C13—N2 | −0.6 (3) |
C4—C5—C6—C7 | −178.3 (3) | C9—C8—C13—N2 | 178.5 (2) |
C13—N2—C7—N1 | −0.7 (3) | N1—C8—C13—C12 | 178.6 (2) |
C13—N2—C7—C6 | −179.7 (2) | C9—C8—C13—C12 | −2.3 (4) |
C8—N1—C7—N2 | 0.3 (3) | C15—O2—C14—O1 | −1.6 (4) |
C17—N1—C7—N2 | 168.1 (2) | C15—O2—C14—C11 | 178.4 (2) |
C8—N1—C7—C6 | 179.4 (2) | C12—C11—C14—O1 | −179.9 (2) |
C17—N1—C7—C6 | −12.9 (4) | C10—C11—C14—O1 | 1.9 (4) |
C1—C6—C7—N2 | −66.1 (3) | C12—C11—C14—O2 | 0.1 (3) |
C5—C6—C7—N2 | 112.4 (3) | C10—C11—C14—O2 | −178.1 (2) |
C1—C6—C7—N1 | 114.9 (3) | C14—O2—C15—C16 | 170.8 (2) |
C5—C6—C7—N1 | −66.5 (3) | C7—N1—C17—C20 | 120.4 (3) |
C7—N1—C8—C9 | −178.8 (3) | C8—N1—C17—C20 | −74.4 (3) |
C17—N1—C8—C9 | 13.8 (4) | C7—N1—C17—C18 | −110.3 (3) |
C7—N1—C8—C13 | 0.2 (2) | C8—N1—C17—C18 | 54.9 (3) |
C17—N1—C8—C13 | −167.3 (2) | N1—C17—C18—C19 | 53.6 (3) |
N1—C8—C9—C10 | −178.9 (2) | C20—C17—C18—C19 | −178.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C21—H21C···O1i | 0.96 | 2.47 | 3.389 (4) | 161 |
Symmetry code: (i) −x, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H24N2O3 |
Mr | 352.42 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 10.5815 (3), 12.1079 (3), 15.1050 (3) |
β (°) | 93.678 (2) |
V (Å3) | 1931.26 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.40 × 0.31 × 0.07 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.968, 0.994 |
No. of measured, independent and observed [I > 2s(I)] reflections | 19216, 4437, 2266 |
Rint | 0.065 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.066, 0.150, 1.04 |
No. of reflections | 4437 |
No. of parameters | 235 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.13, −0.18 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C21—H21C···O1i | 0.9600 | 2.4700 | 3.389 (4) | 161.00 |
Symmetry code: (i) −x, y−1/2, −z+1/2. |
Acknowledgements
NA, ASAR and HO are grateful to Universiti Sains Malaysia (USM) for funding the synthetic chemistry research under the USM Research University grant (1001/PFARMASI/815026). NA thanks USM for the award of postdoctoral fellowship. HKF and MH thank the Malaysian Government and USM for the Research University Golden Goose grant No. 1001/PFIZIK/811012. MH also thanks USM for a post-doctoral research fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The benzimidazole nucleus is the key building block for a variety of compounds that play crucial roles in the function of a number of biologically important molecules (Tanious et al., 2004). Benzimidazole derivatives have shown different therapeutic properties such as antihypertensive (Kohara et al., 1996) and anti-inflammatory (Mader et al., 2008) activities. 2-(substitutedphenyl)benzimidazoles with various types of biological activities, such as antibacterial (Coburn et al., 1987) and antiviral (Roth et al., 1997), have been reported. Due to their importance, the crystal structure determination of the title compound was carried out and the results are presented here.
In the title molecule (Fig. 1), the imidazole ring is essentially planar with a maximum deviation of 0.004 (2) Å for atom C13. The dihedral angle between the imidazole ring (N1/N2/C13/C7–C8) and the benzene ring (C1–C6) is 66.33 (13)° . In the crystal structure (Fig. 2), the molecules are connected by weak C21—H21C···O1 (Table 1) hydrogen bonds, forming one-dimensional chains along the b axis.