organic compounds
2,2′-[(3aRS,7aRS)-Perhydrobenzimidazole-1,3-diyl)bis(methylene)]diphenol
aDepartamento de Química, Universidad Nacional de Colombia, Bogotá, AA 14490, Colombia, and bInstitute of Physics, Na Slovance 2, 182 21 Praha 8, Czech Republic
*Correspondence e-mail: ariverau@unal.edu.co
The molecular structure of the title compound, C21H26N2O2, shows two intramolecular O—H⋯N hydrogen-bonding interactions. In the molecular chains are formed along the c axis through weak C—H⋯O interactions. Neighbouring chains are weakly associated along the a axis via C—H⋯π interactions.
Related literature
For a related structure, see: Rivera et al. (2009). For uses of di-Mannich bases, see Mitra et al. (2006); Elias et al. (1997).
Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED; program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: JANA2006 (Petříček et al., 2006); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: JANA2006.
Supporting information
10.1107/S1600536810009918/tk2643sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810009918/tk2643Isup2.hkl
A solution of (2R,7R,11S,16S)-1,8,10,17-tetraazapentacyclo[8.8.1.18,17. 02,7.011,16]icosane (276 mg, 1.00 mmol) in dioxane (3 ml) and water (4 ml), prepared beforehand following previously described procedures, was added dropwise into a dioxane solution (3 ml) containing two equivalents of phenol (188 mg, 2.00 mmol) in a two-necked round-bottomed flask. The mixture was refluxed for about 12 h. The solvent was evaporated under reduced pressure until a sticky residue appeared. The product was purified by
on a silica column, and subjected to with benzene:ethyl acetate (yield 21%, M.pt. = 413–414 K). Single crystals of racemic (I) were grown from a CHCl3 solution by slow evaporation of the solvent at room temperature over a period of about 2 weeks.The C-bound H atoms were geometrically placed (C-H = 0.96 Å) and refined as riding with Uiso(H) = 1.2Ueq(C). The positions of the hydroxyl-H atoms were refined with Uiso(H) = 1.2Ueq(O).
Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell
CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SIR2002 (Burla et al., 2003); program(s) used to refine structure: JANA2006 (Petříček et al., 2006); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: JANA2006 (Petříček et al., 2006).Fig. 1. The molecular structure of (I), showing the atomic numbering scheme with atomic displacement ellipsoids drawn at the 50% probability level. The dashed lines indicates intramolecular O–H···N hydrogen bonds. | |
Fig. 2. Packing diagram for (I) with intermolecular interactions drawn as dashed lines. |
C21H26N2O2 | Z = 2 |
Mr = 338.5 | F(000) = 364 |
Triclinic, P1 | Dx = 1.268 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54184 Å |
a = 5.5177 (1) Å | Cell parameters from 9142 reflections |
b = 12.0432 (4) Å | θ = 3.3–65.4° |
c = 14.3752 (4) Å | µ = 0.65 mm−1 |
α = 69.705 (3)° | T = 120 K |
β = 89.341 (2)° | Prism, colorless |
γ = 81.751 (2)° | 0.24 × 0.21 × 0.19 mm |
V = 885.92 (5) Å3 |
Oxford Diffraction Xcalibur, diffractometer with an Atlas (Gemini ultra Cu) detector | 3023 independent reflections |
Radiation source: X-ray tube | 2685 reflections with I > 3σ(I) |
Mirror monochromator | Rint = 0.018 |
Detector resolution: 10.3784 pixels mm-1 | θmax = 65.8°, θmin = 3.3° |
Rotation method data acquisition using ω scans | h = −6→6 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −13→13 |
Tmin = 0.774, Tmax = 1.000 | l = −16→16 |
11989 measured reflections |
Refinement on F2 | 98 constraints |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.118 | Weighting scheme based on measured s.u.'s w = 1/[σ2(I) + 0.0016I2] |
S = 2.41 | (Δ/σ)max = 0.006 |
3023 reflections | Δρmax = 0.25 e Å−3 |
232 parameters | Δρmin = −0.19 e Å−3 |
0 restraints |
C21H26N2O2 | γ = 81.751 (2)° |
Mr = 338.5 | V = 885.92 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.5177 (1) Å | Cu Kα radiation |
b = 12.0432 (4) Å | µ = 0.65 mm−1 |
c = 14.3752 (4) Å | T = 120 K |
α = 69.705 (3)° | 0.24 × 0.21 × 0.19 mm |
β = 89.341 (2)° |
Oxford Diffraction Xcalibur, diffractometer with an Atlas (Gemini ultra Cu) detector | 3023 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2685 reflections with I > 3σ(I) |
Tmin = 0.774, Tmax = 1.000 | Rint = 0.018 |
11989 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.118 | H atoms treated by a mixture of independent and constrained refinement |
S = 2.41 | Δρmax = 0.25 e Å−3 |
3023 reflections | Δρmin = −0.19 e Å−3 |
232 parameters |
Refinement. The refinement was carried out against all reflections. The conventional R-factor is always based on F. The goodness of fit as well as the weighted R-factor are based on F and F2 for refinement carried out on F and F2, respectively. The threshold expression is used only for calculating R-factors etc. and it is not relevant to the choice of reflections for refinement. The program used for refinement, Jana2006, uses the weighting scheme based on the experimental expectations, see _refine_ls_weighting_details, that does not force S to be one. Therefore the values of S are usually larger than the ones from the SHELX program. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.55804 (17) | 0.14020 (9) | 0.44644 (7) | 0.0291 (4) | |
O2 | 0.83868 (17) | 0.18264 (9) | −0.03369 (7) | 0.0305 (4) | |
N1 | 0.79361 (18) | 0.08554 (9) | 0.29799 (7) | 0.0202 (4) | |
N2 | 0.62975 (19) | 0.10318 (10) | 0.14258 (7) | 0.0213 (4) | |
C1 | 0.6914 (2) | 0.17421 (12) | 0.20218 (9) | 0.0226 (5) | |
C2 | 0.9951 (2) | 0.12344 (12) | 0.33988 (9) | 0.0226 (5) | |
C3 | 0.9035 (2) | 0.23158 (11) | 0.36752 (9) | 0.0216 (4) | |
C4 | 0.6882 (2) | 0.23380 (12) | 0.42039 (9) | 0.0227 (4) | |
C5 | 0.6072 (2) | 0.33136 (12) | 0.44923 (9) | 0.0261 (5) | |
C6 | 0.7390 (2) | 0.42599 (13) | 0.42654 (10) | 0.0289 (5) | |
C7 | 0.9518 (2) | 0.42527 (13) | 0.37409 (10) | 0.0289 (5) | |
C8 | 1.0308 (2) | 0.32828 (12) | 0.34497 (10) | 0.0254 (5) | |
C9 | 0.8513 (2) | −0.02791 (11) | 0.27990 (9) | 0.0210 (4) | |
C10 | 0.8803 (2) | −0.14204 (12) | 0.36961 (9) | 0.0265 (5) | |
C11 | 0.9041 (3) | −0.24770 (13) | 0.33239 (10) | 0.0295 (5) | |
C12 | 0.6923 (3) | −0.23872 (12) | 0.26116 (10) | 0.0295 (5) | |
C13 | 0.6592 (2) | −0.11997 (12) | 0.17294 (10) | 0.0259 (5) | |
C14 | 0.6331 (2) | −0.01887 (11) | 0.21374 (9) | 0.0207 (4) | |
C15 | 0.4060 (2) | 0.15656 (12) | 0.07972 (9) | 0.0231 (5) | |
C16 | 0.4414 (2) | 0.27197 (12) | −0.00170 (9) | 0.0220 (4) | |
C17 | 0.6553 (2) | 0.27821 (12) | −0.05575 (9) | 0.0242 (5) | |
C18 | 0.6825 (3) | 0.38203 (13) | −0.13478 (10) | 0.0297 (5) | |
C19 | 0.4978 (3) | 0.47854 (13) | −0.16005 (10) | 0.0322 (5) | |
C20 | 0.2872 (3) | 0.47453 (13) | −0.10655 (10) | 0.0321 (5) | |
C21 | 0.2613 (2) | 0.37168 (13) | −0.02762 (10) | 0.0273 (5) | |
H1a | 0.544692 | 0.22078 | 0.213055 | 0.0271* | |
H1b | 0.814039 | 0.221818 | 0.169948 | 0.0271* | |
H2a | 1.119524 | 0.142433 | 0.292045 | 0.0271* | |
H2b | 1.066463 | 0.059026 | 0.397776 | 0.0271* | |
H5 | 0.459427 | 0.332936 | 0.484953 | 0.0313* | |
H6 | 0.683126 | 0.492726 | 0.447191 | 0.0347* | |
H7 | 1.042987 | 0.491174 | 0.358217 | 0.0346* | |
H8 | 1.177255 | 0.328004 | 0.308288 | 0.0304* | |
H9 | 1.010365 | −0.035487 | 0.253016 | 0.0252* | |
H10a | 0.737945 | −0.142807 | 0.408735 | 0.0318* | |
H10b | 1.025945 | −0.147212 | 0.407689 | 0.0318* | |
H11a | 0.912941 | −0.321113 | 0.388014 | 0.0353* | |
H11b | 1.056388 | −0.252589 | 0.300031 | 0.0353* | |
H12a | 0.543303 | −0.246619 | 0.296477 | 0.0354* | |
H12b | 0.720963 | −0.304289 | 0.237045 | 0.0354* | |
H13a | 0.800881 | −0.116292 | 0.133191 | 0.031* | |
H13b | 0.513586 | −0.113908 | 0.134504 | 0.031* | |
H14 | 0.478413 | −0.028884 | 0.244425 | 0.0249* | |
H15a | 0.273969 | 0.172023 | 0.119698 | 0.0277* | |
H15b | 0.361755 | 0.10108 | 0.050763 | 0.0277* | |
H18 | 0.829452 | 0.386296 | −0.171479 | 0.0356* | |
H19 | 0.515368 | 0.549372 | −0.215424 | 0.0386* | |
H20 | 0.160216 | 0.542534 | −0.124022 | 0.0386* | |
H21 | 0.115837 | 0.369273 | 0.009909 | 0.0328* | |
H1o | 0.604 (3) | 0.0973 (15) | 0.4118 (12) | 0.0349* | |
H2o | 0.810 (3) | 0.1344 (15) | 0.0240 (13) | 0.0366* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0304 (5) | 0.0306 (6) | 0.0309 (6) | −0.0103 (4) | 0.0112 (4) | −0.0146 (4) |
O2 | 0.0248 (5) | 0.0374 (6) | 0.0250 (5) | −0.0010 (4) | 0.0063 (4) | −0.0072 (4) |
N1 | 0.0204 (5) | 0.0221 (6) | 0.0178 (5) | −0.0029 (4) | −0.0004 (4) | −0.0065 (4) |
N2 | 0.0215 (6) | 0.0241 (6) | 0.0173 (5) | −0.0028 (4) | −0.0008 (4) | −0.0061 (4) |
C1 | 0.0236 (7) | 0.0238 (7) | 0.0200 (7) | −0.0034 (5) | 0.0002 (5) | −0.0069 (5) |
C2 | 0.0198 (6) | 0.0279 (7) | 0.0216 (7) | −0.0042 (5) | 0.0002 (5) | −0.0101 (5) |
C3 | 0.0204 (6) | 0.0270 (7) | 0.0161 (6) | −0.0012 (5) | −0.0029 (5) | −0.0067 (5) |
C4 | 0.0230 (6) | 0.0269 (7) | 0.0177 (6) | −0.0045 (5) | −0.0006 (5) | −0.0068 (5) |
C5 | 0.0239 (7) | 0.0317 (8) | 0.0231 (7) | −0.0014 (5) | 0.0020 (5) | −0.0112 (6) |
C6 | 0.0321 (7) | 0.0271 (8) | 0.0282 (7) | 0.0006 (6) | −0.0014 (6) | −0.0124 (6) |
C7 | 0.0305 (7) | 0.0278 (7) | 0.0294 (7) | −0.0085 (6) | −0.0003 (6) | −0.0098 (6) |
C8 | 0.0215 (7) | 0.0304 (8) | 0.0239 (7) | −0.0042 (5) | 0.0012 (5) | −0.0089 (6) |
C9 | 0.0195 (6) | 0.0251 (7) | 0.0198 (6) | −0.0033 (5) | 0.0027 (5) | −0.0097 (5) |
C10 | 0.0292 (7) | 0.0266 (7) | 0.0214 (7) | −0.0021 (6) | −0.0025 (5) | −0.0061 (6) |
C11 | 0.0333 (8) | 0.0239 (7) | 0.0285 (7) | −0.0024 (6) | −0.0004 (6) | −0.0066 (6) |
C12 | 0.0320 (8) | 0.0258 (8) | 0.0321 (7) | −0.0041 (6) | 0.0000 (6) | −0.0118 (6) |
C13 | 0.0254 (7) | 0.0292 (7) | 0.0245 (7) | −0.0025 (5) | −0.0020 (5) | −0.0119 (6) |
C14 | 0.0193 (6) | 0.0239 (7) | 0.0188 (6) | −0.0034 (5) | 0.0033 (5) | −0.0071 (5) |
C15 | 0.0197 (6) | 0.0295 (7) | 0.0186 (6) | −0.0031 (5) | 0.0003 (5) | −0.0068 (5) |
C16 | 0.0225 (6) | 0.0276 (7) | 0.0160 (6) | −0.0050 (5) | −0.0022 (5) | −0.0073 (5) |
C17 | 0.0226 (7) | 0.0315 (8) | 0.0197 (6) | −0.0043 (5) | −0.0012 (5) | −0.0103 (6) |
C18 | 0.0279 (7) | 0.0399 (8) | 0.0220 (7) | −0.0132 (6) | 0.0034 (5) | −0.0086 (6) |
C19 | 0.0403 (8) | 0.0296 (8) | 0.0245 (7) | −0.0136 (6) | −0.0028 (6) | −0.0034 (6) |
C20 | 0.0354 (8) | 0.0282 (8) | 0.0297 (8) | −0.0025 (6) | −0.0045 (6) | −0.0069 (6) |
C21 | 0.0245 (7) | 0.0331 (8) | 0.0241 (7) | −0.0029 (6) | 0.0008 (5) | −0.0104 (6) |
O1—C4 | 1.3640 (17) | C9—H9 | 0.96 |
O1—H1o | 0.85 (2) | C10—C11 | 1.531 (2) |
O2—C17 | 1.3672 (15) | C10—H10a | 0.96 |
O2—H2o | 0.860 (16) | C10—H10b | 0.96 |
N1—C1 | 1.4766 (14) | C11—C12 | 1.530 (2) |
N1—C2 | 1.4691 (19) | C11—H11a | 0.96 |
N1—C9 | 1.4682 (19) | C11—H11b | 0.96 |
N2—C1 | 1.476 (2) | C12—C13 | 1.5360 (17) |
N2—C14 | 1.4686 (15) | C12—H12a | 0.96 |
N2—C15 | 1.4657 (15) | C12—H12b | 0.96 |
C1—H1a | 0.96 | C13—C14 | 1.513 (2) |
C1—H1b | 0.96 | C13—H13a | 0.96 |
C2—C3 | 1.508 (2) | C13—H13b | 0.96 |
C2—H2a | 0.96 | C14—H14 | 0.96 |
C2—H2b | 0.96 | C15—C16 | 1.5112 (17) |
C3—C4 | 1.4045 (18) | C15—H15a | 0.96 |
C3—C8 | 1.387 (2) | C15—H15b | 0.96 |
C4—C5 | 1.391 (2) | C16—C17 | 1.4021 (18) |
C5—C6 | 1.382 (2) | C16—C21 | 1.3873 (18) |
C5—H5 | 0.96 | C17—C18 | 1.3932 (17) |
C6—C7 | 1.388 (2) | C18—C19 | 1.3774 (19) |
C6—H6 | 0.96 | C18—H18 | 0.96 |
C7—C8 | 1.385 (2) | C19—C20 | 1.383 (2) |
C7—H7 | 0.96 | C19—H19 | 0.96 |
C8—H8 | 0.96 | C20—C21 | 1.3836 (18) |
C9—C10 | 1.5132 (16) | C20—H20 | 0.96 |
C9—C14 | 1.5110 (18) | C21—H21 | 0.96 |
C4—O1—H1o | 108.2 (12) | H10a—C10—H10b | 111.0115 |
C17—O2—H2o | 106.1 (11) | C10—C11—C12 | 112.84 (11) |
C1—N1—C2 | 113.14 (10) | C10—C11—H11a | 109.4701 |
C1—N1—C9 | 105.19 (10) | C10—C11—H11b | 109.4716 |
C2—N1—C9 | 116.16 (9) | C12—C11—H11a | 109.4715 |
C1—N2—C14 | 105.33 (9) | C12—C11—H11b | 109.4714 |
C1—N2—C15 | 113.32 (10) | H11a—C11—H11b | 105.8786 |
C14—N2—C15 | 116.36 (10) | C11—C12—C13 | 112.18 (12) |
N1—C1—N2 | 105.37 (10) | C11—C12—H12a | 109.4714 |
N1—C1—H1a | 109.4708 | C11—C12—H12b | 109.4713 |
N1—C1—H1b | 109.4714 | C13—C12—H12a | 109.4711 |
N2—C1—H1a | 109.4714 | C13—C12—H12b | 109.4709 |
N2—C1—H1b | 109.4717 | H12a—C12—H12b | 106.6143 |
H1a—C1—H1b | 113.2791 | C12—C13—C14 | 108.00 (11) |
N1—C2—C3 | 110.68 (10) | C12—C13—H13a | 109.4714 |
N1—C2—H2a | 109.4709 | C12—C13—H13b | 109.4718 |
N1—C2—H2b | 109.4709 | C14—C13—H13a | 109.4704 |
C3—C2—H2a | 109.4716 | C14—C13—H13b | 109.4706 |
C3—C2—H2b | 109.4715 | H13a—C13—H13b | 110.8996 |
H2a—C2—H2b | 108.2321 | N2—C14—C9 | 100.17 (10) |
C2—C3—C4 | 119.73 (12) | N2—C14—C13 | 117.53 (10) |
C2—C3—C8 | 121.68 (11) | N2—C14—H14 | 111.415 |
C4—C3—C8 | 118.55 (13) | C9—C14—C13 | 111.83 (10) |
O1—C4—C3 | 121.18 (13) | C9—C14—H14 | 117.1568 |
O1—C4—C5 | 118.71 (12) | C13—C14—H14 | 99.6523 |
C3—C4—C5 | 120.10 (13) | N2—C15—C16 | 111.17 (11) |
C4—C5—C6 | 120.11 (13) | N2—C15—H15a | 109.4717 |
C4—C5—H5 | 119.9469 | N2—C15—H15b | 109.4711 |
C6—C5—H5 | 119.9479 | C16—C15—H15a | 109.4714 |
C5—C6—C7 | 120.49 (15) | C16—C15—H15b | 109.4709 |
C5—C6—H6 | 119.7554 | H15a—C15—H15b | 107.7171 |
C7—C6—H6 | 119.7553 | C15—C16—C17 | 119.99 (11) |
C6—C7—C8 | 119.18 (14) | C15—C16—C21 | 121.39 (11) |
C6—C7—H7 | 120.41 | C17—C16—C21 | 118.57 (11) |
C8—C7—H7 | 120.4116 | O2—C17—C16 | 121.12 (10) |
C3—C8—C7 | 121.58 (12) | O2—C17—C18 | 118.62 (11) |
C3—C8—H8 | 119.211 | C16—C17—C18 | 120.25 (11) |
C7—C8—H8 | 119.2111 | C17—C18—C19 | 119.75 (12) |
N1—C9—C10 | 117.23 (11) | C17—C18—H18 | 120.1267 |
N1—C9—C14 | 100.32 (9) | C19—C18—H18 | 120.1261 |
N1—C9—H9 | 111.4609 | C18—C19—C20 | 120.74 (12) |
C10—C9—C14 | 111.72 (11) | C18—C19—H19 | 119.6301 |
C10—C9—H9 | 99.994 | C20—C19—H19 | 119.6303 |
C14—C9—H9 | 116.9901 | C19—C20—C21 | 119.43 (12) |
C9—C10—C11 | 107.89 (11) | C19—C20—H20 | 120.2825 |
C9—C10—H10a | 109.4713 | C21—C20—H20 | 120.2833 |
C9—C10—H10b | 109.4707 | C16—C21—C20 | 121.24 (13) |
C11—C10—H10a | 109.4714 | C16—C21—H21 | 119.3796 |
C11—C10—H10b | 109.4712 | C20—C21—H21 | 119.3801 |
Cg1 and Cg2 are the centroids of the C3–C8 and C16–C21 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···N1 | 0.85 (2) | 1.97 (2) | 2.7096 (14) | 146 (2) |
O2—H2O···N2 | 0.86 (2) | 1.91 (2) | 2.6894 (14) | 150 (2) |
C10—H10a···O1i | 0.96 | 2.64 | 3.5666 (17) | 163 |
C13—H13a···O2ii | 0.96 | 2.63 | 3.5458 (17) | 160 |
C10—H10b···Cg1iii | 0.96 | 2.94 | 3.5885 (13) | 126 |
C12—H12b···Cg2iv | 0.96 | 2.93 | 3.7022 (16) | 139 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+2, −y, −z; (iii) −x+2, −y, −z+1; (iv) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C21H26N2O2 |
Mr | 338.5 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 120 |
a, b, c (Å) | 5.5177 (1), 12.0432 (4), 14.3752 (4) |
α, β, γ (°) | 69.705 (3), 89.341 (2), 81.751 (2) |
V (Å3) | 885.92 (5) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.65 |
Crystal size (mm) | 0.24 × 0.21 × 0.19 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur, diffractometer with an Atlas (Gemini ultra Cu) detector |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.774, 1.000 |
No. of measured, independent and observed [I > 3σ(I)] reflections | 11989, 3023, 2685 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.592 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.118, 2.41 |
No. of reflections | 3023 |
No. of parameters | 232 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.19 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2009), CrysAlis RED (Oxford Diffraction, 2009), SIR2002 (Burla et al., 2003), JANA2006 (Petříček et al., 2006), DIAMOND (Brandenburg & Putz, 2005).
Cg1 and Cg2 are the centroids of the C3–C8 and C16–C21 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···N1 | 0.847 (18) | 1.967 (17) | 2.7096 (14) | 145.8 (16) |
O2—H2O···N2 | 0.860 (18) | 1.913 (17) | 2.6894 (14) | 149.5 (17) |
C10—H10a···O1i | 0.96 | 2.64 | 3.5666 (17) | 163 |
C13—H13a···O2ii | 0.96 | 2.63 | 3.5458 (17) | 160 |
C10—H10b···Cg1iii | 0.96 | 2.94 | 3.5885 (13) | 126 |
C12—H12b···Cg2iv | 0.96 | 2.93 | 3.7022 (16) | 139 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+2, −y, −z; (iii) −x+2, −y, −z+1; (iv) −x+1, −y+1, −z. |
Acknowledgements
We acknowledge the Dirección de Investigaciones Sede Bogotá (DIB) of the Universidad Nacional de Colombia for financial support of this work, as well as the Institutional research plan No. AVOZ10100521 of the Institute of Physics and the Praemium Academiae project of the Academy of Sciences (ASCR).
References
Brandenburg, K. & Putz, H. (2005). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Burla, M. C., Camalli, M., Carrozzini, B., Cascarano, G. L., Giacovazzo, C., Polidori, G. & Spagna, R. (2003). J. Appl. Cryst. 36, 1103. CrossRef IUCr Journals Google Scholar
Elias, H., Stock, F. & Röhr, C. (1997). Acta Cryst. C53, 862–864. CSD CrossRef CAS Web of Science IUCr Journals Google Scholar
Mitra, A., Harvey, M. J., Proffitt, M. K., DePue, L. J., Parkin, S. & Atwood, D. A. (2006). J. Organomet. Chem. 69, 523–528. Web of Science CSD CrossRef Google Scholar
Oxford Diffraction (2009). CrysAlis CCD, CrysAlis RED and CrysAlis PRO. Oxford Diffraction Ltd, Yarnton, England. Google Scholar
Petříček, V., Dušek, M. & Palatinus, L. (2006). JANA2006. Institute of Physics, Prague, Czech Republic. Google Scholar
Rivera, A., Quiroga, D., Rios-Motta, J., Carda, J. & Peris, G. (2009). J. Chem. Crystallogr. 39, 827–830. Web of Science CSD CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Mannich bases are versatile synthetic intermediates and are used as model systems for the study of intramolecular hydrogen bonding and proton transfer (Mitra et al. 2006; Elias et al. 1997). The presence of these interactions is undoubtedly one of the essential factors contributing to their highly thermodynamic stability. Recently, we used (2R,7R,11S,16S)-1,8,10,17-tetraazapentacyclo[8.8.1.18,17. 02,7.011,16]icosane as precursor for a di-Mannich base (Rivera et al. 2009). The X-ray analysis showed the N lone pairs to be anti-axial and both N atoms to be sufficiently basic to form intramolecular hydrogen bonds. In continuation of our research program on the structure, properties, and reactivity of aminal cages (pre-formed Mannich reagents), we report here the synthesis and crystal structure of the title compound, (I).
Compound (I) features intramolecular hydrogen bonds O—H···N, Fig. 1. The bond lengths are normal and comparable to the corresponding values observed in the related structure of 2,2'-(3aR,7aR/3aS,7aS)-hexahydro-1H-benzo[d]imidazole-1,3(2H)-diyl)-bis(methylene)-bis(4-methyl-phenol) (Rivera et al. 2009).
The crystal packing (Fig 2) displays weak intermolecular C–H···O interactions (Table 1) that link pairs of enantiomers alternately to form a racemic chain along the c axis. Chains are linked along the a direction by C–H···π interactions (Table 1).