metal-organic compounds
Aquabis(isonicotinamide-κN1)bis(4-methylbenzoato)-κO;κ2O,O′-cadmium(II) monohydrate
aDepartment of Chemistry, Kafkas University, 36100 Kars, Turkey, bDepartment of Physics, Karabük University, 78050 Karabük, Turkey, cDepartment of Chemistry, Faculty of Science, Anadolu University, 26470 Yenibağlar, Eskişehir, Turkey, and dDepartment of Physics, Hacettepe University, 06800 Beytepe, Ankara, Turkey
*Correspondence e-mail: merzifon@hacettepe.edu.tr
In the 8H7O2)2(C6H6N2O)2(H2O)]·H2O, the CdII cation is coordinated by two 4-methylbenzoate (PMB) anions, two isonicotinamide (INA) ligands and one water molecule in a distorted octahedral CdN2O4 geometry. One of PMB ions acts as a bidentate ligand while the other and the two INA are monodentate ligands. An O—H⋯O hydrogen bond links the uncoordinated water molecule to the carboxyl groups of the complex. The dihedral angles between the carboxyl groups and the adjacent benzene rings are 10.28 (11) and 21.24 (9)°, while the two benzene rings and the two pyridine rings are oriented at dihedral angles of 6.90 (4) and 88.64 (4)°, respectively. In the O—H⋯O and N—H⋯O hydrogen bonds link the molecules into a supramolecular structure. A π–π contact between the benzene rings [centroid–centroid distance = 3.911 (1) Å] may further stabilize the Weak C—H⋯π interactions involving the pyridine rings also occur in the crystal structure.
of the title compound, [Cd(CRelated literature
For niacin, see: Krishnamachari (1974) and for the nicotinic acid derivative N,N-diethylnicotinamide, see: Bigoli et al. (1972). For related structures, see: Greenaway et al. (1984); Hökelek & Necefoğlu (1996); Hökelek et al. (2009a,b,c,d).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810008366/xu2732sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810008366/xu2732Isup2.hkl
The title compound was prepared by the reaction of 3CdSO4.8H2O (1.29 g, 5 mmol) in H2O (40 ml) and INA (1.22 g, 10 mmol) in H2O (15 ml) with sodium 4-methylbenzoate (1.58 g, 10 mmol) in H2O (350 ml). The mixture was filtered and set aside to crystallize at ambient temperature for one week, giving colorless single crystals.
Atoms H21, H22, H41, H42 (for NH2) and H71, H72, H81, H82 (for H2O) were located in a difference Fourier map and refined isotropically. The remaining H atoms were positioned geometrically with C—H = 0.93 and 0.96 Å for aromatic and methyl H atoms and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C), where x = 1.5 for methyl H and x = 1.2 for aromatic H atoms.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title molecule with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. Dashed lines indicate the hydrogen-bondings. |
[Cd(C8H7O2)2(C6H6N2O)2(H2O)]·H2O | Z = 2 |
Mr = 662.97 | F(000) = 676 |
Triclinic, P1 | Dx = 1.555 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.5032 (2) Å | Cell parameters from 8576 reflections |
b = 12.3543 (3) Å | θ = 2.4–28.3° |
c = 13.6134 (3) Å | µ = 0.83 mm−1 |
α = 78.278 (3)° | T = 102 K |
β = 69.776 (2)° | Block, colorless |
γ = 71.746 (3)° | 0.40 × 0.20 × 0.15 mm |
V = 1416.18 (6) Å3 |
Bruker Kappa APEXII CCD area-detector diffractometer | 7154 independent reflections |
Radiation source: fine-focus sealed tube | 6962 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.021 |
ϕ and ω scans | θmax = 28.6°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −12→12 |
Tmin = 0.819, Tmax = 0.881 | k = −16→16 |
25922 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.020 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.053 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.14 | w = 1/[σ2(Fo2) + (0.0175P)2 + 1.1925P] where P = (Fo2 + 2Fc2)/3 |
7154 reflections | (Δ/σ)max = 0.001 |
404 parameters | Δρmax = 0.56 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
[Cd(C8H7O2)2(C6H6N2O)2(H2O)]·H2O | γ = 71.746 (3)° |
Mr = 662.97 | V = 1416.18 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.5032 (2) Å | Mo Kα radiation |
b = 12.3543 (3) Å | µ = 0.83 mm−1 |
c = 13.6134 (3) Å | T = 102 K |
α = 78.278 (3)° | 0.40 × 0.20 × 0.15 mm |
β = 69.776 (2)° |
Bruker Kappa APEXII CCD area-detector diffractometer | 7154 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 6962 reflections with I > 2σ(I) |
Tmin = 0.819, Tmax = 0.881 | Rint = 0.021 |
25922 measured reflections |
R[F2 > 2σ(F2)] = 0.020 | 0 restraints |
wR(F2) = 0.053 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.14 | Δρmax = 0.56 e Å−3 |
7154 reflections | Δρmin = −0.38 e Å−3 |
404 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.141608 (11) | 0.121190 (8) | 0.094078 (7) | 0.00977 (3) | |
O1 | 0.21408 (12) | 0.17237 (9) | 0.21480 (8) | 0.0153 (2) | |
O2 | 0.43486 (13) | 0.06777 (9) | 0.11883 (8) | 0.0158 (2) | |
O3 | −0.09543 (12) | 0.15690 (9) | 0.04849 (8) | 0.0150 (2) | |
O4 | −0.08901 (13) | 0.26914 (10) | 0.15327 (9) | 0.0164 (2) | |
O5 | 0.56683 (13) | 0.41643 (10) | −0.38584 (9) | 0.0199 (2) | |
O6 | −0.03527 (14) | −0.40999 (9) | 0.37641 (9) | 0.0178 (2) | |
O7 | 0.25490 (14) | −0.02091 (10) | −0.01623 (9) | 0.0183 (2) | |
H71 | 0.345 (3) | −0.038 (2) | −0.0464 (19) | 0.030 (6)* | |
H72 | 0.214 (3) | −0.064 (2) | −0.0261 (18) | 0.028 (6)* | |
O8 | −0.06722 (16) | 0.23407 (12) | 0.36356 (10) | 0.0224 (2) | |
H81 | −0.115 (3) | 0.252 (2) | 0.323 (2) | 0.039 (7)* | |
H82 | 0.021 (3) | 0.216 (2) | 0.326 (2) | 0.039 (7)* | |
N1 | 0.24879 (15) | 0.23682 (11) | −0.05300 (10) | 0.0131 (2) | |
N2 | 0.32591 (17) | 0.46852 (14) | −0.40532 (11) | 0.0222 (3) | |
H21 | 0.355 (3) | 0.502 (2) | −0.4672 (19) | 0.029 (6)* | |
H22 | 0.235 (3) | 0.4542 (19) | −0.3832 (18) | 0.027 (6)* | |
N3 | 0.06838 (15) | −0.03017 (11) | 0.21984 (10) | 0.0139 (2) | |
N4 | 0.02873 (16) | −0.36600 (12) | 0.50561 (10) | 0.0162 (2) | |
H41 | 0.056 (2) | −0.3201 (18) | 0.5322 (17) | 0.022 (5)* | |
H42 | 0.020 (2) | −0.4306 (19) | 0.5415 (16) | 0.019 (5)* | |
C1 | 0.35814 (17) | 0.12189 (12) | 0.19750 (11) | 0.0122 (3) | |
C2 | 0.43118 (17) | 0.12606 (13) | 0.27780 (11) | 0.0138 (3) | |
C3 | 0.34802 (19) | 0.19738 (14) | 0.35725 (13) | 0.0190 (3) | |
H3 | 0.2493 | 0.2439 | 0.3587 | 0.023* | |
C4 | 0.4114 (2) | 0.19972 (16) | 0.43464 (13) | 0.0223 (3) | |
H4 | 0.3544 | 0.2478 | 0.4874 | 0.027* | |
C5 | 0.55876 (19) | 0.13100 (15) | 0.43413 (12) | 0.0196 (3) | |
C6 | 0.64170 (19) | 0.06017 (15) | 0.35394 (13) | 0.0208 (3) | |
H6 | 0.7406 | 0.0138 | 0.3523 | 0.025* | |
C7 | 0.57917 (18) | 0.05760 (14) | 0.27640 (12) | 0.0174 (3) | |
H7 | 0.6364 | 0.0099 | 0.2233 | 0.021* | |
C8 | 0.6266 (2) | 0.13244 (18) | 0.51874 (14) | 0.0276 (4) | |
H8A | 0.7263 | 0.0775 | 0.5079 | 0.041* | |
H8B | 0.5582 | 0.1132 | 0.5865 | 0.041* | |
H8C | 0.6384 | 0.2075 | 0.5157 | 0.041* | |
C9 | −0.16048 (17) | 0.24072 (12) | 0.10406 (11) | 0.0123 (3) | |
C10 | −0.32334 (17) | 0.30742 (12) | 0.10992 (12) | 0.0130 (3) | |
C11 | −0.41385 (18) | 0.37317 (13) | 0.19319 (12) | 0.0166 (3) | |
H11 | −0.3706 | 0.3785 | 0.2432 | 0.020* | |
C12 | −0.56823 (19) | 0.43074 (14) | 0.20192 (13) | 0.0195 (3) | |
H12 | −0.6280 | 0.4732 | 0.2584 | 0.023* | |
C13 | −0.63418 (18) | 0.42543 (13) | 0.12678 (13) | 0.0177 (3) | |
C14 | −0.54103 (18) | 0.36423 (13) | 0.04114 (13) | 0.0176 (3) | |
H14 | −0.5822 | 0.3633 | −0.0114 | 0.021* | |
C15 | −0.38809 (18) | 0.30477 (13) | 0.03297 (12) | 0.0152 (3) | |
H15 | −0.3283 | 0.2629 | −0.0240 | 0.018* | |
C16 | −0.80317 (19) | 0.48229 (16) | 0.13748 (15) | 0.0257 (4) | |
H16A | −0.8456 | 0.5324 | 0.1920 | 0.039* | |
H16B | −0.8590 | 0.4248 | 0.1551 | 0.039* | |
H16C | −0.8127 | 0.5259 | 0.0721 | 0.039* | |
C17 | 0.16137 (17) | 0.33676 (13) | −0.08530 (12) | 0.0152 (3) | |
H17 | 0.0612 | 0.3651 | −0.0419 | 0.018* | |
C18 | 0.21389 (18) | 0.39975 (13) | −0.18067 (12) | 0.0166 (3) | |
H18 | 0.1500 | 0.4686 | −0.2009 | 0.020* | |
C19 | 0.36446 (17) | 0.35759 (13) | −0.24544 (11) | 0.0134 (3) | |
C20 | 0.45742 (18) | 0.25694 (13) | −0.20997 (12) | 0.0153 (3) | |
H20 | 0.5599 | 0.2288 | −0.2501 | 0.018* | |
C21 | 0.39564 (18) | 0.19876 (13) | −0.11404 (12) | 0.0148 (3) | |
H21A | 0.4582 | 0.1308 | −0.0911 | 0.018* | |
C22 | 0.42827 (18) | 0.41740 (13) | −0.35244 (12) | 0.0154 (3) | |
C23 | 0.01222 (18) | −0.10290 (13) | 0.19260 (12) | 0.0153 (3) | |
H23 | −0.0121 | −0.0849 | 0.1296 | 0.018* | |
C24 | −0.01121 (18) | −0.20371 (13) | 0.25425 (12) | 0.0158 (3) | |
H24 | −0.0495 | −0.2523 | 0.2325 | 0.019* | |
C25 | 0.02332 (17) | −0.23100 (12) | 0.34907 (11) | 0.0125 (3) | |
C26 | 0.07689 (18) | −0.15443 (13) | 0.37961 (12) | 0.0160 (3) | |
H26 | 0.0976 | −0.1688 | 0.4437 | 0.019* | |
C27 | 0.09879 (18) | −0.05607 (13) | 0.31243 (12) | 0.0156 (3) | |
H27 | 0.1363 | −0.0057 | 0.3326 | 0.019* | |
C28 | 0.00343 (17) | −0.34324 (12) | 0.41280 (11) | 0.0131 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.01036 (5) | 0.01012 (5) | 0.00874 (5) | −0.00363 (4) | −0.00264 (4) | 0.00016 (3) |
O1 | 0.0118 (5) | 0.0192 (5) | 0.0162 (5) | −0.0038 (4) | −0.0054 (4) | −0.0029 (4) |
O2 | 0.0165 (5) | 0.0163 (5) | 0.0152 (5) | −0.0032 (4) | −0.0054 (4) | −0.0038 (4) |
O3 | 0.0122 (5) | 0.0160 (5) | 0.0169 (5) | −0.0018 (4) | −0.0048 (4) | −0.0040 (4) |
O4 | 0.0142 (5) | 0.0201 (5) | 0.0177 (5) | −0.0041 (4) | −0.0076 (4) | −0.0034 (4) |
O5 | 0.0164 (5) | 0.0272 (6) | 0.0148 (5) | −0.0095 (5) | −0.0039 (4) | 0.0046 (4) |
O6 | 0.0239 (6) | 0.0157 (5) | 0.0185 (5) | −0.0105 (4) | −0.0098 (4) | 0.0023 (4) |
O7 | 0.0141 (5) | 0.0195 (6) | 0.0213 (6) | −0.0072 (5) | 0.0013 (4) | −0.0100 (4) |
O8 | 0.0184 (6) | 0.0347 (7) | 0.0148 (5) | −0.0063 (5) | −0.0039 (5) | −0.0075 (5) |
N1 | 0.0138 (6) | 0.0132 (6) | 0.0125 (6) | −0.0055 (5) | −0.0033 (5) | 0.0003 (4) |
N2 | 0.0179 (7) | 0.0322 (8) | 0.0158 (6) | −0.0125 (6) | −0.0065 (5) | 0.0105 (6) |
N3 | 0.0152 (6) | 0.0144 (6) | 0.0121 (6) | −0.0049 (5) | −0.0038 (5) | −0.0006 (4) |
N4 | 0.0225 (7) | 0.0131 (6) | 0.0147 (6) | −0.0078 (5) | −0.0072 (5) | 0.0024 (5) |
C1 | 0.0128 (6) | 0.0106 (6) | 0.0138 (6) | −0.0055 (5) | −0.0045 (5) | 0.0017 (5) |
C2 | 0.0135 (6) | 0.0162 (7) | 0.0128 (6) | −0.0060 (5) | −0.0045 (5) | 0.0001 (5) |
C3 | 0.0157 (7) | 0.0226 (8) | 0.0205 (7) | −0.0035 (6) | −0.0068 (6) | −0.0063 (6) |
C4 | 0.0224 (8) | 0.0292 (9) | 0.0190 (8) | −0.0074 (7) | −0.0063 (6) | −0.0091 (6) |
C5 | 0.0207 (8) | 0.0278 (8) | 0.0155 (7) | −0.0132 (7) | −0.0078 (6) | 0.0014 (6) |
C6 | 0.0142 (7) | 0.0299 (9) | 0.0190 (7) | −0.0055 (6) | −0.0079 (6) | 0.0006 (6) |
C7 | 0.0146 (7) | 0.0223 (8) | 0.0145 (7) | −0.0037 (6) | −0.0044 (6) | −0.0022 (6) |
C8 | 0.0299 (9) | 0.0432 (11) | 0.0195 (8) | −0.0202 (8) | −0.0128 (7) | 0.0018 (7) |
C9 | 0.0119 (6) | 0.0136 (6) | 0.0109 (6) | −0.0049 (5) | −0.0029 (5) | 0.0016 (5) |
C10 | 0.0114 (6) | 0.0124 (6) | 0.0157 (7) | −0.0038 (5) | −0.0049 (5) | −0.0002 (5) |
C11 | 0.0158 (7) | 0.0173 (7) | 0.0183 (7) | −0.0032 (6) | −0.0067 (6) | −0.0042 (6) |
C12 | 0.0162 (7) | 0.0189 (7) | 0.0209 (8) | −0.0012 (6) | −0.0037 (6) | −0.0057 (6) |
C13 | 0.0130 (7) | 0.0150 (7) | 0.0246 (8) | −0.0029 (5) | −0.0067 (6) | −0.0004 (6) |
C14 | 0.0169 (7) | 0.0159 (7) | 0.0241 (8) | −0.0038 (6) | −0.0119 (6) | −0.0019 (6) |
C15 | 0.0151 (7) | 0.0136 (7) | 0.0177 (7) | −0.0028 (5) | −0.0064 (6) | −0.0027 (5) |
C16 | 0.0142 (7) | 0.0257 (9) | 0.0352 (10) | 0.0002 (6) | −0.0095 (7) | −0.0039 (7) |
C17 | 0.0117 (6) | 0.0170 (7) | 0.0145 (7) | −0.0040 (5) | −0.0029 (5) | 0.0015 (5) |
C18 | 0.0143 (7) | 0.0164 (7) | 0.0162 (7) | −0.0037 (6) | −0.0051 (6) | 0.0044 (6) |
C19 | 0.0151 (7) | 0.0151 (7) | 0.0114 (6) | −0.0072 (5) | −0.0047 (5) | 0.0018 (5) |
C20 | 0.0143 (7) | 0.0154 (7) | 0.0136 (7) | −0.0040 (5) | −0.0017 (5) | −0.0008 (5) |
C21 | 0.0154 (7) | 0.0129 (7) | 0.0144 (7) | −0.0029 (5) | −0.0042 (5) | 0.0002 (5) |
C22 | 0.0174 (7) | 0.0161 (7) | 0.0123 (6) | −0.0073 (6) | −0.0035 (5) | 0.0019 (5) |
C23 | 0.0190 (7) | 0.0170 (7) | 0.0115 (6) | −0.0071 (6) | −0.0059 (5) | 0.0009 (5) |
C24 | 0.0216 (7) | 0.0152 (7) | 0.0132 (7) | −0.0082 (6) | −0.0058 (6) | −0.0012 (5) |
C25 | 0.0124 (6) | 0.0117 (6) | 0.0123 (6) | −0.0037 (5) | −0.0033 (5) | 0.0012 (5) |
C26 | 0.0202 (7) | 0.0171 (7) | 0.0142 (7) | −0.0088 (6) | −0.0088 (6) | 0.0028 (5) |
C27 | 0.0203 (7) | 0.0154 (7) | 0.0145 (7) | −0.0091 (6) | −0.0073 (6) | 0.0014 (5) |
C28 | 0.0111 (6) | 0.0128 (6) | 0.0136 (6) | −0.0036 (5) | −0.0025 (5) | 0.0009 (5) |
Cd1—O1 | 2.2478 (11) | C8—C5 | 1.507 (2) |
Cd1—O3 | 2.4263 (11) | C8—H8A | 0.9600 |
Cd1—O4 | 2.3794 (11) | C8—H8B | 0.9600 |
Cd1—O7 | 2.2947 (11) | C8—H8C | 0.9600 |
Cd1—N1 | 2.3295 (12) | C9—C10 | 1.491 (2) |
Cd1—N3 | 2.3671 (13) | C10—C11 | 1.395 (2) |
O1—C1 | 1.2730 (18) | C10—C15 | 1.396 (2) |
O2—C1 | 1.2535 (18) | C11—H11 | 0.9300 |
O3—C9 | 1.2730 (18) | C12—C11 | 1.390 (2) |
O4—C9 | 1.2622 (18) | C12—C13 | 1.393 (2) |
O5—C22 | 1.2325 (19) | C12—H12 | 0.9300 |
O6—C28 | 1.2422 (18) | C13—C16 | 1.506 (2) |
O7—H71 | 0.79 (3) | C14—C13 | 1.393 (2) |
O7—H72 | 0.80 (2) | C14—C15 | 1.385 (2) |
O8—H81 | 0.79 (3) | C14—H14 | 0.9300 |
O8—H82 | 0.81 (3) | C15—H15 | 0.9300 |
N1—C17 | 1.3406 (19) | C16—H16A | 0.9600 |
N1—C21 | 1.3435 (19) | C16—H16B | 0.9600 |
N2—C22 | 1.333 (2) | C16—H16C | 0.9600 |
N2—H21 | 0.85 (2) | C17—H17 | 0.9300 |
N2—H22 | 0.87 (2) | C18—C17 | 1.387 (2) |
N3—C23 | 1.3425 (19) | C18—C19 | 1.394 (2) |
N3—C27 | 1.3433 (19) | C18—H18 | 0.9300 |
N4—C28 | 1.325 (2) | C20—C19 | 1.387 (2) |
N4—H41 | 0.87 (2) | C20—H20 | 0.9300 |
N4—H42 | 0.86 (2) | C21—C20 | 1.385 (2) |
C1—C2 | 1.500 (2) | C21—H21A | 0.9300 |
C2—C3 | 1.390 (2) | C22—C19 | 1.506 (2) |
C2—C7 | 1.392 (2) | C23—C24 | 1.387 (2) |
C3—C4 | 1.391 (2) | C23—H23 | 0.9300 |
C3—H3 | 0.9300 | C24—H24 | 0.9300 |
C4—C5 | 1.391 (2) | C25—C24 | 1.391 (2) |
C4—H4 | 0.9300 | C26—C25 | 1.391 (2) |
C6—C5 | 1.393 (2) | C26—C27 | 1.390 (2) |
C6—C7 | 1.388 (2) | C26—H26 | 0.9300 |
C6—H6 | 0.9300 | C27—H27 | 0.9300 |
C7—H7 | 0.9300 | C28—C25 | 1.5077 (19) |
O1—Cd1—O3 | 137.23 (4) | O4—C9—O3 | 121.19 (13) |
O1—Cd1—O4 | 83.65 (4) | O4—C9—C10 | 119.45 (13) |
O1—Cd1—O7 | 133.14 (4) | C11—C10—C15 | 118.94 (14) |
O1—Cd1—N1 | 99.39 (4) | C11—C10—C9 | 120.24 (13) |
O1—Cd1—N3 | 87.65 (4) | C15—C10—C9 | 120.82 (13) |
O4—Cd1—O3 | 54.71 (4) | C10—C11—H11 | 119.8 |
O7—Cd1—O3 | 88.51 (4) | C12—C11—C10 | 120.44 (14) |
O7—Cd1—O4 | 143.07 (4) | C12—C11—H11 | 119.8 |
O7—Cd1—N1 | 84.40 (4) | C11—C12—C13 | 120.59 (15) |
O7—Cd1—N3 | 82.88 (4) | C11—C12—H12 | 119.7 |
N1—Cd1—O3 | 93.12 (4) | C13—C12—H12 | 119.7 |
N1—Cd1—O4 | 93.53 (4) | C12—C13—C14 | 118.64 (14) |
N1—Cd1—N3 | 167.06 (4) | C12—C13—C16 | 121.48 (15) |
N3—Cd1—O3 | 88.91 (4) | C14—C13—C16 | 119.87 (15) |
N3—Cd1—O4 | 98.06 (4) | C13—C14—H14 | 119.5 |
C1—O1—Cd1 | 105.84 (9) | C15—C14—C13 | 121.06 (14) |
C9—O3—Cd1 | 90.83 (8) | C15—C14—H14 | 119.5 |
C9—O4—Cd1 | 93.27 (9) | C10—C15—H15 | 119.9 |
Cd1—O7—H71 | 123.1 (17) | C14—C15—C10 | 120.21 (14) |
Cd1—O7—H72 | 127.0 (17) | C14—C15—H15 | 119.9 |
H72—O7—H71 | 110 (2) | C13—C16—H16A | 109.5 |
H81—O8—H82 | 103 (3) | C13—C16—H16B | 109.5 |
C17—N1—Cd1 | 121.04 (10) | C13—C16—H16C | 109.5 |
C17—N1—C21 | 118.25 (13) | H16A—C16—H16B | 109.5 |
C21—N1—Cd1 | 120.31 (10) | H16A—C16—H16C | 109.5 |
C22—N2—H21 | 120.3 (15) | H16B—C16—H16C | 109.5 |
C22—N2—H22 | 119.5 (15) | N1—C17—C18 | 122.87 (14) |
H22—N2—H21 | 119 (2) | N1—C17—H17 | 118.6 |
C23—N3—Cd1 | 118.71 (10) | C18—C17—H17 | 118.6 |
C23—N3—C27 | 117.68 (13) | C17—C18—C19 | 118.55 (14) |
C27—N3—Cd1 | 123.03 (10) | C17—C18—H18 | 120.7 |
C28—N4—H41 | 124.1 (14) | C19—C18—H18 | 120.7 |
C28—N4—H42 | 118.4 (14) | C18—C19—C22 | 122.10 (14) |
H42—N4—H41 | 117.4 (19) | C20—C19—C18 | 118.62 (13) |
O1—C1—C2 | 117.01 (13) | C20—C19—C22 | 119.28 (13) |
O2—C1—O1 | 121.75 (13) | C19—C20—H20 | 120.4 |
O2—C1—C2 | 121.20 (13) | C21—C20—C19 | 119.15 (14) |
C3—C2—C1 | 119.49 (14) | C21—C20—H20 | 120.4 |
C3—C2—C7 | 119.02 (14) | N1—C21—C20 | 122.46 (14) |
C7—C2—C1 | 121.47 (13) | N1—C21—H21A | 118.8 |
C2—C3—C4 | 120.48 (15) | C20—C21—H21A | 118.8 |
C2—C3—H3 | 119.8 | O5—C22—N2 | 124.40 (14) |
C4—C3—H3 | 119.8 | O5—C22—C19 | 120.11 (14) |
C3—C4—H4 | 119.6 | N2—C22—C19 | 115.49 (13) |
C5—C4—C3 | 120.82 (15) | N3—C23—C24 | 122.90 (14) |
C5—C4—H4 | 119.6 | N3—C23—H23 | 118.5 |
C4—C5—C6 | 118.36 (14) | C24—C23—H23 | 118.5 |
C4—C5—C8 | 120.82 (16) | C23—C24—C25 | 119.07 (14) |
C6—C5—C8 | 120.82 (16) | C23—C24—H24 | 120.5 |
C5—C6—H6 | 119.5 | C25—C24—H24 | 120.5 |
C7—C6—C5 | 121.08 (15) | C24—C25—C26 | 118.47 (13) |
C7—C6—H6 | 119.5 | C24—C25—C28 | 118.30 (13) |
C2—C7—H7 | 119.9 | C26—C25—C28 | 123.23 (13) |
C6—C7—C2 | 120.24 (15) | C25—C26—H26 | 120.7 |
C6—C7—H7 | 119.9 | C27—C26—C25 | 118.64 (14) |
C5—C8—H8A | 109.5 | C27—C26—H26 | 120.7 |
C5—C8—H8B | 109.5 | N3—C27—C26 | 123.20 (14) |
C5—C8—H8C | 109.5 | N3—C27—H27 | 118.4 |
H8A—C8—H8B | 109.5 | C26—C27—H27 | 118.4 |
H8A—C8—H8C | 109.5 | O6—C28—N4 | 123.03 (14) |
H8B—C8—H8C | 109.5 | O6—C28—C25 | 119.00 (13) |
O3—C9—C10 | 119.35 (13) | N4—C28—C25 | 117.97 (13) |
O3—Cd1—O1—C1 | 178.82 (8) | O1—C1—C2—C3 | −9.6 (2) |
O4—Cd1—O1—C1 | −168.65 (9) | O1—C1—C2—C7 | 168.54 (14) |
O7—Cd1—O1—C1 | 15.00 (11) | O2—C1—C2—C3 | 172.66 (14) |
N1—Cd1—O1—C1 | −76.11 (9) | O2—C1—C2—C7 | −9.2 (2) |
N3—Cd1—O1—C1 | 92.97 (9) | C1—C2—C3—C4 | 177.80 (14) |
O1—Cd1—O3—C9 | 15.18 (11) | C7—C2—C3—C4 | −0.4 (2) |
O4—Cd1—O3—C9 | −0.14 (8) | C1—C2—C7—C6 | −177.67 (14) |
O7—Cd1—O3—C9 | −176.56 (9) | C3—C2—C7—C6 | 0.5 (2) |
N1—Cd1—O3—C9 | −92.25 (9) | C2—C3—C4—C5 | 0.0 (3) |
N3—Cd1—O3—C9 | 100.53 (9) | C3—C4—C5—C6 | 0.3 (3) |
O1—Cd1—O4—C9 | −169.47 (9) | C3—C4—C5—C8 | −179.23 (16) |
O3—Cd1—O4—C9 | 0.14 (8) | C5—C6—C7—C2 | −0.2 (2) |
O7—Cd1—O4—C9 | 6.09 (12) | C7—C6—C5—C4 | −0.2 (2) |
N1—Cd1—O4—C9 | 91.47 (9) | C7—C6—C5—C8 | 179.32 (15) |
N3—Cd1—O4—C9 | −82.76 (9) | O3—C9—C10—C11 | 159.36 (14) |
O1—Cd1—N1—C17 | −98.58 (11) | O3—C9—C10—C15 | −20.3 (2) |
O1—Cd1—N1—C21 | 88.82 (11) | O4—C9—C10—C11 | −21.4 (2) |
O3—Cd1—N1—C17 | 40.37 (11) | O4—C9—C10—C15 | 158.92 (14) |
O3—Cd1—N1—C21 | −132.23 (11) | C9—C10—C11—C12 | −176.66 (14) |
O4—Cd1—N1—C17 | −14.44 (11) | C15—C10—C11—C12 | 3.0 (2) |
O4—Cd1—N1—C21 | 172.96 (11) | C9—C10—C15—C14 | 177.96 (14) |
O7—Cd1—N1—C17 | 128.57 (12) | C11—C10—C15—C14 | −1.7 (2) |
O7—Cd1—N1—C21 | −44.04 (11) | C13—C12—C11—C10 | −1.2 (2) |
N3—Cd1—N1—C17 | 139.16 (18) | C11—C12—C13—C14 | −1.9 (2) |
N3—Cd1—N1—C21 | −33.4 (3) | C11—C12—C13—C16 | 176.95 (15) |
O1—Cd1—N3—C23 | −178.51 (11) | C15—C14—C13—C12 | 3.3 (2) |
O1—Cd1—N3—C27 | −7.44 (12) | C15—C14—C13—C16 | −175.65 (15) |
O3—Cd1—N3—C23 | 44.13 (11) | C13—C14—C15—C10 | −1.5 (2) |
O3—Cd1—N3—C27 | −144.80 (12) | C19—C18—C17—N1 | −0.4 (2) |
O4—Cd1—N3—C23 | 98.24 (11) | C17—C18—C19—C20 | −2.6 (2) |
O4—Cd1—N3—C27 | −90.69 (12) | C17—C18—C19—C22 | 177.02 (14) |
O7—Cd1—N3—C23 | −44.50 (11) | C21—C20—C19—C18 | 3.1 (2) |
O7—Cd1—N3—C27 | 126.57 (12) | C21—C20—C19—C22 | −176.49 (13) |
N1—Cd1—N3—C23 | −55.1 (2) | N1—C21—C20—C19 | −0.8 (2) |
N1—Cd1—N3—C27 | 115.9 (2) | O5—C22—C19—C18 | 145.44 (16) |
Cd1—N1—C17—C18 | −170.02 (12) | O5—C22—C19—C20 | −35.0 (2) |
C21—N1—C17—C18 | 2.7 (2) | N2—C22—C19—C18 | −34.9 (2) |
Cd1—N1—C21—C20 | 170.65 (11) | N2—C22—C19—C20 | 144.70 (15) |
C17—N1—C21—C20 | −2.2 (2) | N3—C23—C24—C25 | 0.6 (2) |
Cd1—N3—C23—C24 | 169.79 (12) | C26—C25—C24—C23 | 1.5 (2) |
C27—N3—C23—C24 | −1.8 (2) | C28—C25—C24—C23 | −177.50 (14) |
Cd1—N3—C27—C26 | −170.25 (12) | C27—C26—C25—C24 | −2.2 (2) |
C23—N3—C27—C26 | 0.9 (2) | C27—C26—C25—C28 | 176.66 (14) |
Cd1—O1—C1—O2 | 7.16 (16) | C25—C26—C27—N3 | 1.1 (2) |
Cd1—O1—C1—C2 | −170.52 (10) | O6—C28—C25—C24 | 3.6 (2) |
Cd1—O3—C9—O4 | 0.24 (14) | O6—C28—C25—C26 | −175.30 (14) |
Cd1—O3—C9—C10 | 179.43 (11) | N4—C28—C25—C24 | −176.55 (14) |
Cd1—O4—C9—O3 | −0.25 (14) | N4—C28—C25—C26 | 4.5 (2) |
Cd1—O4—C9—C10 | −179.43 (11) |
Cg3 and Cg4 are the centroids of the N1/C17-C21 and N3/C23-C27 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H21···O5i | 0.85 (2) | 2.05 (2) | 2.8990 (19) | 177 (2) |
N2—H22···O6ii | 0.87 (3) | 2.10 (3) | 2.948 (2) | 163 (2) |
N4—H41···O8iii | 0.87 (2) | 1.99 (2) | 2.822 (2) | 160 (2) |
N4—H42···O6iv | 0.86 (2) | 2.05 (2) | 2.8979 (18) | 171 (2) |
O7—H71···O2v | 0.79 (3) | 1.93 (3) | 2.7186 (19) | 175 (2) |
O7—H72···O3ii | 0.80 (3) | 1.97 (3) | 2.7690 (18) | 174 (3) |
O8—H81···O4 | 0.79 (3) | 2.21 (3) | 2.8767 (18) | 143 (3) |
O8—H82···O1 | 0.80 (3) | 1.93 (3) | 2.7269 (18) | 169 (3) |
C6—H6···Cg4vi | 0.93 | 2.82 | 3.720 (2) | 163 |
C14—H14···Cg3vii | 0.93 | 2.78 | 3.6840 (19) | 164 |
Symmetry codes: (i) −x+1, −y+1, −z−1; (ii) −x, −y, −z; (iii) −x, −y, −z+1; (iv) −x, −y−1, −z+1; (v) −x+1, −y, −z; (vi) x+1, y, z; (vii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C8H7O2)2(C6H6N2O)2(H2O)]·H2O |
Mr | 662.97 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 102 |
a, b, c (Å) | 9.5032 (2), 12.3543 (3), 13.6134 (3) |
α, β, γ (°) | 78.278 (3), 69.776 (2), 71.746 (3) |
V (Å3) | 1416.18 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.83 |
Crystal size (mm) | 0.40 × 0.20 × 0.15 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.819, 0.881 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 25922, 7154, 6962 |
Rint | 0.021 |
(sin θ/λ)max (Å−1) | 0.673 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.020, 0.053, 1.14 |
No. of reflections | 7154 |
No. of parameters | 404 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.56, −0.38 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Cd1—O1 | 2.2478 (11) | Cd1—O7 | 2.2947 (11) |
Cd1—O3 | 2.4263 (11) | Cd1—N1 | 2.3295 (12) |
Cd1—O4 | 2.3794 (11) | Cd1—N3 | 2.3671 (13) |
Cg3 and Cg4 are the centroids of the N1/C17-C21 and N3/C23-C27 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H21···O5i | 0.85 (2) | 2.05 (2) | 2.8990 (19) | 177 (2) |
N2—H22···O6ii | 0.87 (3) | 2.10 (3) | 2.948 (2) | 163 (2) |
N4—H41···O8iii | 0.87 (2) | 1.99 (2) | 2.822 (2) | 160 (2) |
N4—H42···O6iv | 0.86 (2) | 2.05 (2) | 2.8979 (18) | 171 (2) |
O7—H71···O2v | 0.79 (3) | 1.93 (3) | 2.7186 (19) | 175 (2) |
O7—H72···O3ii | 0.80 (3) | 1.97 (3) | 2.7690 (18) | 174 (3) |
O8—H81···O4 | 0.79 (3) | 2.21 (3) | 2.8767 (18) | 143 (3) |
O8—H82···O1 | 0.80 (3) | 1.93 (3) | 2.7269 (18) | 169 (3) |
C6—H6···Cg4vi | 0.93 | 2.82 | 3.7196 (20) | 163 |
C14—H14···Cg3vii | 0.93 | 2.78 | 3.6840 (19) | 164 |
Symmetry codes: (i) −x+1, −y+1, −z−1; (ii) −x, −y, −z; (iii) −x, −y, −z+1; (iv) −x, −y−1, −z+1; (v) −x+1, −y, −z; (vi) x+1, y, z; (vii) x−1, y, z. |
Acknowledgements
The authors are indebted to Anadolu University and the Medicinal Plants and Medicine Research Centre of Anadolu University, Eskişehir, Turkey, for the use of X-ray diffractometer. This work was supported financially by Kafkas University Research Fund (grant No. 2009-FEF-03).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As a part of our ongoing investigation on transition metal complexes of nicotinamide (NA), one form of niacin (Krishnamachari, 1974), and/or the nicotinic acid derivative N,N-diethylnicotinamide (DENA), an important respiratory stimulant (Bigoli et al., 1972), the title compound was synthesized and its crystal structure is reported herein.
The title compound, (I), is a monomeric complex, where the CdII ion is surrounded by two 4-methylbenzoate (PMB) and two isonicotinamide (INA) ligands and one water molecule. One of the PMB ions acts as a bidentate ligand, while the other PMB and two INA are monodentate ligands. The crystal structures of similar complexes of CdII, CoII, MnII and ZnII ions, [Cd(C8H5O3)2(C6H6N2O)2(H2O)].H2O, (II) (Hökelek et al., 2009a), [Co(C9H10NO2)2(C6H6N2O)(H2O)2], (III) (Hökelek et al., 2009b), [Mn(C9H10NO2)2(C6H6N2O)(H2O)2], (IV) (Hökelek et al., 2009c), [Zn2(DENA)2(C7H5O3)4].2H2O, (V) (Hökelek & Necefoğlu, 1996) and [Zn(C8H8NO2)2(C6H6N2O)2].H2O, (VI) (Hökelek et al., 2009d) have also been reported. In (II), the two benzoate ions are coordinated to the Cd atom as bidentate ligands. In the other structures one of the benzoate ligands acts as a bidentate ligand, while the other is monodentate ligand.
In the title compound (Fig. 1), the average Cd—O bond length (Table 1) is 2.3371 (11) Å and the Cd atom is displaced out of the least-squares planes of the carboxylate groups (O1/C1/O2) and (O3/C9/O4) by 0.2697 (1) Å and 0.0105 (1) Å, respectively. The dihedral angle between the planar carboxylate groups and the adjacent benzene rings A (C2—C7) and B (C10—C15) are 10.28 (11)° and 21.24 (9)°, respectively, while those between rings A, B, C (N1/C17—C21) and D (N3/C23—C27) are A/B = 6.90 (4), A/C = 63.11 (5), A/D = 76.86 (4), B/C = 62.69 (5), B/D = 83.75 (4) and C/D = 88.64 (4) °. The intramolecular O—H···O hydrogen bonds (Table 2) link the water molecules to the carboxylate groups (O1/C1/O2) and (O3/C9/O4). In (I), the O3—Cd1—O4 angle is 54.71 (4)°. The corresponding O—M—O (where M is a metal) angles are 52.91 (4)° and 53.96 (4)° in (II), 60.70 (4)° in (III), 58.45 (9)° in (IV), 58.3 (3)° in (V), 60.03 (6)° in (VI) and 55.2 (1)° in [Cu(Asp)2(py)2] (where Asp is acetylsalicylate and py is pyridine) [(VII); Greenaway et al., 1984].
In the crystal structure, intramolecular O—H···O and intermolecular O—H···O and N—H···O hydrogen bonds (Table 2) link the molecules into a supramolecular structure, in which they may be effective in the stabilization of the structure. The π–π contact between the benzene rings, Cg1—Cg2i, [symmetry code (i): 1 + x, y, z, where Cg1 and Cg2 are the centroids of rings A (C2—C7) and B (C10—C15)] may further stabilize the structure, with centroid-centroid distance of 3.911 (1) Å. There also exists two weak C—H···π interactions involving the pyridine rings C and D (Table 2).